EsuBft969_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft969_2a-0001
Unique NameEsuBft969_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_565contigScaffold_565:237285..237990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft969_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length70
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft969_2aEsuBft969_2aEctocarpus subulatus male Bft15bgeneScaffold_565 237285..237990 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_2a-0001-exonEsuBft969_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_565 237285..237990 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_2a-0001-cdsEsuBft969_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_565 237285..237494 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_2a-0001-exonagat-three_prime_utr-23612Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_565 237495..237990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_2a-0001EsuBft969_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_565 237285..237494 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft969_2a-0001 ID=EsuBft969_2a-0001|Name=EsuBft969_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=706bp|location=Sequence derived from alignment at Scaffold_565:237285..237990+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCAGTTGCCAGCATGTCTTCGAAAAGGGAGGCGCTCGACGTCAT
GGGCCATGAACAGGCACTCCTGAAGAGCATCTGGCCCATCACGTCGAGGG
CCTCCCTCTTTGAAGACATGCTGGTCCCGTCAGCATCCGCAACCCCCACC
CCCCCCCGCATGTGCCACCCTGCAACACACGACGCAGTTGACTTGTGGAA
CCGACAGTAGGGGACTGTCTGGAAGAGCTTGCTCTTCCCGACAAGAACGT
GCAGGTGTCGCCAGGAGCGCGCGTGTGCGACGGCTTCAGGGTGATCGGAC
GAGCCATGTACACATGCGCAGGCAAGGTTCGGAGCACCTTCGAGGGGTAG
TTTAATTTTGCTTTGGGACGGTTGATGGGTGGTTTGATGGTGCTCTTGAG
ATGATTGAGGGATGATTCGATGGCGATCTTGGGACGATCGGGGGACGGTG
CTCGTATGCCTTCGATCGAGCACAGAACGCCGTTCAGCCCAAGCCCATCC
CCGCTGTCTCTTCCGCCCCCGGAGCCGACGTCGCCTGCGTCGGAGGTACG
GACATCACGTGTTTGCACGTGCTTTTACATTTTTCGGCGAGGTTGTCAGC
TCTTGTTCGTACGTGTCCTCACAGATCTCGCTCTCTCTCTGATTTTTGGA
GCTCGCGGGAAAGCAAGGGGACGGGTTGCAAAACGTCTGGTGTAAATGGT
CCACTG
back to top

protein sequence of EsuBft969_2a-0001

>EsuBft969_2 ID=EsuBft969_2|Name=EsuBft969_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=69bp
MVAVASMSSKREALDVMGHEQALLKSIWPITSRASLFEDMLVPSASATPT
PPRMCHPATHDAVDLWNRQ
back to top

mRNA from alignment at Scaffold_565:237285..237990+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft969_2a-0001 ID=EsuBft969_2a-0001|Name=EsuBft969_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=706bp|location=Sequence derived from alignment at Scaffold_565:237285..237990+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCAGTTGCCAGCATGTCTTCGAAAAGGGAGGCGCTCGACGTCAT
GGGCCATGAACAGGCACTCCTGAAGAGCATCTGGCCCATCACGTCGAGGG
CCTCCCTCTTTGAAGACATGCTGGTCCCGTCAGCATCCGCAACCCCCACC
CCCCCCCGCATGTGCCACCCTGCAACACACGACGCAGTTGACTTGTGGAA
CCGACAGTAGGGGACTGTCTGGAAGAGCTTGCTCTTCCCGACAAGAACGT
GCAGGTGTCGCCAGGAGCGCGCGTGTGCGACGGCTTCAGGGTGATCGGAC
GAGCCATGTACACATGCGCAGGCAAGGTTCGGAGCACCTTCGAGGGGTAG
TTTAATTTTGCTTTGGGACGGTTGATGGGTGGTTTGATGGTGCTCTTGAG
ATGATTGAGGGATGATTCGATGGCGATCTTGGGACGATCGGGGGACGGTG
CTCGTATGCCTTCGATCGAGCACAGAACGCCGTTCAGCCCAAGCCCATCC
CCGCTGTCTCTTCCGCCCCCGGAGCCGACGTCGCCTGCGTCGGAGGTACG
GACATCACGTGTTTGCACGTGCTTTTACATTTTTCGGCGAGGTTGTCAGC
TCTTGTTCGTACGTGTCCTCACAGATCTCGCTCTCTCTCTGATTTTTGGA
GCTCGCGGGAAAGCAAGGGGACGGGTTGCAAAACGTCTGGTGTAAATGGT
CCACTG
back to top

Coding sequence (CDS) from alignment at Scaffold_565:237285..237990+

>EsuBft969_2a-0001 ID=EsuBft969_2a-0001|Name=EsuBft969_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=210bp|location=Sequence derived from alignment at Scaffold_565:237285..237990+ (Ectocarpus subulatus male Bft15b)
ATGGTGGCAGTTGCCAGCATGTCTTCGAAAAGGGAGGCGCTCGACGTCAT
GGGCCATGAACAGGCACTCCTGAAGAGCATCTGGCCCATCACGTCGAGGG
CCTCCCTCTTTGAAGACATGCTGGTCCCGTCAGCATCCGCAACCCCCACC
CCCCCCCGCATGTGCCACCCTGCAACACACGACGCAGTTGACTTGTGGAA
CCGACAGTAG
back to top