EsuBft969_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft969_10a-0001
Unique NameEsuBft969_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_565contigScaffold_565:289578..292824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft969_10
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length157
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002120.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10aEsuBft969_10aEctocarpus subulatus male Bft15bgeneScaffold_565 289578..292824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10a-0001EsuBft969_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_565 289634..291631 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10a-0001-exonEsuBft969_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_565 289578..289829 +
EsuBft969_10a-0001-exonagat-exon-72380Ectocarpus subulatus male Bft15bexonScaffold_565 290854..290931 +
EsuBft969_10a-0001-exonagat-exon-72381Ectocarpus subulatus male Bft15bexonScaffold_565 291579..292824 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10a-0001-exonagat-five_prime_utr-15360Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_565 289578..289633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10a-0001-cdsEsuBft969_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_565 289634..289829 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft969_10a-0001-exonagat-three_prime_utr-23610Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_565 291632..292824 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft969_10a-0001 ID=EsuBft969_10a-0001|Name=EsuBft969_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1576bp|location=Sequence derived from alignment at Scaffold_565:289578..292824+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGCGTGAAAGCCATGTTGCCCCGCACACACCCCGCCACGCCGGCGAACTG
TACGGCATGGTTCGCTTGGTGGAGGGTCAGATCGTCGCGGAGGATGAAGA
TGGCGCGGGTGGATGGTTCCGGAGGCTGCTCCGTTGCAGGACGATCAATT
TCCTGGGCTTCCGCGTTCCCCTGTATTGGAGTTGCGTAATCGTCGTCTTC
GCAGGGCTCAAGTTTGGCATCTTCGGACTTCTCTTCGTTGCGGCAGCTGC
GGGCGCAAGCCAGTACGCCTGCAACGATGGAGTTTCGGGCGGCGGCGGAA
GCGGTGGCGGACGTCGACCATTCGCCCGAGGGTCCAACGTCAGAGGTATA
AGCGACCTGCCGAAGCCTCCCCCGTCCAGCTGACGAGGGCCGGGCGCGTG
CTAGAACAAGCTCTCTTCGTGTATCAATCTACACGAGAGCTTCTAGCACG
CGTCCGAGTCGAAGCGAAACTCCTTCAGTACAACGATGTTCAGAGTATTG
CGCCATGTAGAGAGATGCTCTGGTGATGGCAAATCCGGGCGTGGGTAAGG
GAGCGCGGAGGCGGACGAGCAAACTCGACGTTGTACATAGCGTGGGGTGC
GAAGAGTGACCTCGTTGATGCGTTGCGCTCTTGGGAGTTGTGGCTACAAC
AACTCTCATCCTCGATGCCAGAGGGAGTCATAAGCTTGGATACGCGGGCA
CGGGATACTGGGACCTTCTTGGTAGTGTAGCCCTACTGGTGTGCAATTCT
CAGTTATTGGTGTTGAGCCATCGTTTATTCGCCCACACCTACCCCCCCGT
TGCCCGGCGCCGTCGTTTGGATCCACGACGGGCGGAGCATCATTGTTGTA
AGTAGAAATGTACCACGAGCATGGCGGGATTCACGAATGACGCTTGCCAC
TAATAAAGTTCCTTGGGAGACAGGTGGCAGGCCGACATGCGAGTTCTCTC
TGCTAATGAGACCTTTGTGGCGAGGAAAGCCTTACACGGTAACGTTTGGT
TTCATTTCATTGTGTACGTCGCTGTGTCATTTTGTTGGGCTGGGTTGGGT
TGCTTGACTTGATTTTTCCGTAAGGCCCTATGAATTTTTGTCCACCGCGC
TTTGCGTTGTTTCTTGGCGGTTGCTGGGGTTGTTCATCGTTCGTTGAATA
TTCGGCCCGCTTTGTGGTGACAGCGCTGGAGGCAACTGCAGGGTGGCGTG
AGAGCCACGCTTTCAGCGTAAGCTGTGCTGGTAGTGCGCTAATGCGAGGA
GGTACAGATTCTGTGTTCCGACCGCTGGTTGGATCATCGGCGGTGGCCGT
GCTGATGATTTCGTTATTTCATGCCCCCAGAGTACTCCAGTATTTTGGAA
TGGCACATCCCATTAAGCGCTTTATGCCATCCGACACATAGCCTCAGCTC
TCTTGCGAATGCCCACCACGAACTCCTTGCCAACTGTCTCGATGGAAGAT
AGACGTACCAACAATTTATTTTTGGCGGTTGCTGGGATACGGAAAATGAG
CTGTCTGAGGTTTTTGTGCCATCGTCCCAGAAAAATCCGTTTCCACGCGC
AGACGAAGCTGGTAACTCGACGACCC
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protein sequence of EsuBft969_10a-0001

>EsuBft969_10 ID=EsuBft969_10|Name=EsuBft969_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=108bp
MVRLVEGQIVAEDEDGAGGWFRRLLRCRTINFLGFRVPLYWSCVIVVFAG
LKFGIFGLLFVAAAAGASQYACNDGVSGGGGSGGGRRPFARGSNVRGISD
LPKPPPSS
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mRNA from alignment at Scaffold_565:289578..292824+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft969_10a-0001 ID=EsuBft969_10a-0001|Name=EsuBft969_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3247bp|location=Sequence derived from alignment at Scaffold_565:289578..292824+ (Ectocarpus subulatus male Bft15b)
AGCGTGAAAGCCATGTTGCCCCGCACACACCCCGCCACGCCGGCGAACTG
TACGGCATGGTTCGCTTGGTGGAGGGTCAGATCGTCGCGGAGGATGAAGA
TGGCGCGGGTGGATGGTTCCGGAGGCTGCTCCGTTGCAGGACGATCAATT
TCCTGGGCTTCCGCGTTCCCCTGTATTGGAGTTGCGTAATCGTCGTCTTC
GCAGGGCTCAAGTTTGGCATCTTCGGACTTCTCTTCGTTGCGGCAGCTGC
GGGTAAGCCAGCCTGGGCTACGCTACATGTTGTGTACAGGCGATTGAGAG
AACTTCAGTCCGCCGGTGGGCGTCGAGTTTACGGCAGTATTGGTTCTCTA
TCTTATAGCGAGGAGCCGGGGGGGGGCAGCAGCGGAGCGATGTCGTTACT
CGCCCCCTACCTCCTCGCTTGCGCGAAAGCGCACTTCAACACAGCATACC
GGTAGAACACAACAGGTGCCATCTGTCATGACGGCATGCCACACGGTGCG
TACGAAGAGTAGCCGTCCGAACAGCACCGTTGAGCGGACTATCTCGTTAC
CATGGCGAGAGAGGGGTTCCTGTACCAAAAAGTGCCTCGGTTGTTTCGTA
CTCTGGAGTATTGAGAACCCCCATGCGTAATTTATGTGTGACTTGAACAC
CGAGTGCACTGCTGTCGCCGTGGTGTTGTGCTCTGAGGGCCTCTGATGGC
AAGTATGTGCCGCCTTACAGCCCTCGGGTTTCCCGTGAGGCGCAAGATAT
GAAACGCTCACTGCATTTGCACCAAGGTGGTAGGTCATGGCGACGCCGTG
CTCGAGAAAGATGTACCAACACACAGCATGGCACCACGTCTCCCGTCGTC
TAACTTTTCACTTGCCGAGCCCCGAAAACGCTGAACTTGGGAACGCCCAT
CCATGCCTGATGCCTGACCCCCACGCCTGGTAATATGATCGCGGATCGCA
AAAATGAACAAGCGCAGAGTCTGCCGCGACCTTGCCGATGTGTCAACGTC
CATCGCCCCTCCCCTTCATCAGAACCCCGCGCGATACGCTGGACCCATGG
CCTCGTTCCGAGAACATTGCTTGTGACTCGAATCCCCCGCCGTTAAAGTC
GACACGCGCCGAAGAGGCTGTCGGGACAACCATAGAATTGAGGGATGATG
GGCCATGGCGAAGAGAATAGATTGAAAAGAACACGAAACAGCGGAAACCC
AGGTGAAGACGTGAAACCGCACGCCGGACTAACTATTTATTACGGTTTTG
GCCTCGATCTTGCAAAATTGGATCAGGCGCAAGCCAGTACGCCTGCAACG
ATGGAGTTTCGGGCGGCGGCGGAAGCGGTGGCGGACGTCGACCATTCGCC
CGAGGTGAACCTGTCCCACCACACACCCTACAGTAGTGGTTGGCGCTCAT
GCTTGCCATGTGCACGAGTTTGCATTATGTACTGGTGTCAAACATTCTCG
TCTCTCCCAAATAGTGTCTTGAAGAAGATGTTTGATCCGTCGGCAACCAT
GACCCGAAACTCGCAGCTGTCCTACGTAGCTTCACATGCACCGTTTCTGC
CGGTTCGACGTGCGCTGCTCGCTCTTTGTCGAGCGGGCCAAATGTTTATA
ATGGTTTAATGGGTTATGTTCATAACCTTTGGCACAAGTATGTGTTGCGG
CGTTTTGGTGCTGATATCCACCAGAGGATGTTGGTTTTTGTTAGTAGGCA
GAGGTCTGAGTGATCTCCCGATCCGTCGCACTCTCCTTAGGTAGACTCGC
CCCCCTTTCTTCAACCCCACAACTCACAAGGCGCTGTCCGAGGAAAGTCC
TAGCCAATAACCACGGCCAGCGTCCCCTCGATGTTGCCAACGATGTGCCG
GCATCTGGTGTGGTGTGTGTCTTGTTTGGTTGTCCCTATCTCGTCCCCGT
CCCGCGTCTGTGTTAACACCGTCCACCGCGCCGGCGCGCCCGCCGTCGCG
CGACAACCTTGAACGATTTACTCGCGTGTGCACGCATCATCACATTGGCA
GGGTCCAACGTCAGAGGTATAAGCGACCTGCCGAAGCCTCCCCCGTCCAG
CTGACGAGGGCCGGGCGCGTGCTAGAACAAGCTCTCTTCGTGTATCAATC
TACACGAGAGCTTCTAGCACGCGTCCGAGTCGAAGCGAAACTCCTTCAGT
ACAACGATGTTCAGAGTATTGCGCCATGTAGAGAGATGCTCTGGTGATGG
CAAATCCGGGCGTGGGTAAGGGAGCGCGGAGGCGGACGAGCAAACTCGAC
GTTGTACATAGCGTGGGGTGCGAAGAGTGACCTCGTTGATGCGTTGCGCT
CTTGGGAGTTGTGGCTACAACAACTCTCATCCTCGATGCCAGAGGGAGTC
ATAAGCTTGGATACGCGGGCACGGGATACTGGGACCTTCTTGGTAGTGTA
GCCCTACTGGTGTGCAATTCTCAGTTATTGGTGTTGAGCCATCGTTTATT
CGCCCACACCTACCCCCCCGTTGCCCGGCGCCGTCGTTTGGATCCACGAC
GGGCGGAGCATCATTGTTGTAAGTAGAAATGTACCACGAGCATGGCGGGA
TTCACGAATGACGCTTGCCACTAATAAAGTTCCTTGGGAGACAGGTGGCA
GGCCGACATGCGAGTTCTCTCTGCTAATGAGACCTTTGTGGCGAGGAAAG
CCTTACACGGTAACGTTTGGTTTCATTTCATTGTGTACGTCGCTGTGTCA
TTTTGTTGGGCTGGGTTGGGTTGCTTGACTTGATTTTTCCGTAAGGCCCT
ATGAATTTTTGTCCACCGCGCTTTGCGTTGTTTCTTGGCGGTTGCTGGGG
TTGTTCATCGTTCGTTGAATATTCGGCCCGCTTTGTGGTGACAGCGCTGG
AGGCAACTGCAGGGTGGCGTGAGAGCCACGCTTTCAGCGTAAGCTGTGCT
GGTAGTGCGCTAATGCGAGGAGGTACAGATTCTGTGTTCCGACCGCTGGT
TGGATCATCGGCGGTGGCCGTGCTGATGATTTCGTTATTTCATGCCCCCA
GAGTACTCCAGTATTTTGGAATGGCACATCCCATTAAGCGCTTTATGCCA
TCCGACACATAGCCTCAGCTCTCTTGCGAATGCCCACCACGAACTCCTTG
CCAACTGTCTCGATGGAAGATAGACGTACCAACAATTTATTTTTGGCGGT
TGCTGGGATACGGAAAATGAGCTGTCTGAGGTTTTTGTGCCATCGTCCCA
GAAAAATCCGTTTCCACGCGCAGACGAAGCTGGTAACTCGACGACCC
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Coding sequence (CDS) from alignment at Scaffold_565:289578..292824+

>EsuBft969_10a-0001 ID=EsuBft969_10a-0001|Name=EsuBft969_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=327bp|location=Sequence derived from alignment at Scaffold_565:289578..292824+ (Ectocarpus subulatus male Bft15b)
ATGGTTCGCTTGGTGGAGGGTCAGATCGTCGCGGAGGATGAAGATGGCGC
GGGTGGATGGTTCCGGAGGCTGCTCCGTTGCAGGACGATCAATTTCCTGG
GCTTCCGCGTTCCCCTGTATTGGAGTTGCGTAATCGTCGTCTTCGCAGGG
CTCAAGTTTGGCATCTTCGGACTTCTCTTCGTTGCGGCAGCTGCGGGCGC
AAGCCAGTACGCCTGCAACGATGGAGTTTCGGGCGGCGGCGGAAGCGGTG
GCGGACGTCGACCATTCGCCCGAGGGTCCAACGTCAGAGGTATAAGCGAC
CTGCCGAAGCCTCCCCCGTCCAGCTGA
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