EsuBft968_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft968_9a-0001
Unique Name	EsuBft968_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_618	contig	Scaffold_618:592954..594368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft968_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	141
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft968_9a	EsuBft968_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_618 592954..594368 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_9a-0001-exon	EsuBft968_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 592954..594368 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_9a-0001-cds	EsuBft968_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_618 592954..593103 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_9a-0001-exon	agat-three_prime_utr-23609	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 593104..594368 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_9a-0001	EsuBft968_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_618 592954..593103 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_618:592954..594368+
coding sequence from alignment at Scaffold_618:592954..594368+

spliced messenger RNA

>EsuBft968_9a-0001 ID=EsuBft968_9a-0001|Name=EsuBft968_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1415bp|location=Sequence derived from alignment at Scaffold_618:592954..594368+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAAGATGCGCGGGCCTCCAGGCCGTCGGCGTAGGCAGCAATGTCC
ATCTCATCTTTGTGCGCGAAGGCAGACGTCATCAGAAAGGTGGACGGGCA
CTATGTACACGGCCCTAGGTTTGCTAGAAGGAGCTGTACTGTCTCAGTAA
CCTGGTTTTGCCGTCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTG
GGCTGGTTGACCCTTCGGCGCGAGAATTTTTCGACCAAGAACCCTAAGTG
CAACCAGGGAGAAAGCGAGGAACCGACTGGGATAGACAGCAACGAGAGCG
TGCACGAAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGC
GGCACCGGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCAGGCGGACGGC
ATCGAACCGTGGCGCACGGACAAACATCTCTTGTGTTGTCAATTATTTTT
TATACTTTTCTTAATATGACACAACGAGTCCATCTCTGTCATTGATAAGA
GTCAGACAGATTGACAATGGAATCATTGCGTCAGAAAAAACTACCTGCCT
GTATGCCTACGATTTCCCAGACAGCATATAGGGACATCTCCCCTGTGGAA
AACAGGCTCAACAAATCAGTTTGGAAGCTGTCTTGTGTGTCTCATATATG
TTATCTTGGGAAGGTGCAGACGAAGGTTTTGGGTACTGTTGGTTAGTCGG
GCGTTTTGTGTGTCGCACCCTGTTAGTTGTAGGGCATGCAATCTCCATTA
GTTTACAAACGTACTTTCCGTTTTTTTTCCTGAATACAGGTGTTGGGTGT
GTGTGATGGCGTCACTGGTTTCGTAGAGAGACGCGGCAGAGATGGCGCGG
TTAACCCGGGTGCTTTTAATTGTGTACCAGCATCGTGGAAGACACCTTCA
ATGTGGAACGATTCCTAGTCAGTGTCGATGTTTACACTGCTGTGCCTAAC
ACAGATGATTTGGATAGATTCGGGTGATTGTCAATTGCAATGATGGCATT
GGTTGGGTGTTCTTCTTCATTGTATGTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGCAACATGGTGG
TATTATTGTACAGACAGCACTTCAGACAGCAGTACGCTGTAGTCGACAAA
CATTCATTTTGGTTAAATAAATGCGGGACGAGGGGGGTAATGCTGCTGCT
GTAGTCGATTTGTAGTGGGTGGGCGTGTAGTTCAGTTGTAAGCATGCAAA
CGTGCTGCATGCAGGGGTTGCAGGTGTACCTCCTCGGGCTTGCGTACCCT
TTTCTTGCTAATAGTTAGTGTGGGTGTTCTTTGGATCTTCTGATGGCTCT
AGCATTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTTGGGAATAATA
GCAACTGACACGAGT

protein sequence of EsuBft968_9a-0001

>EsuBft968_9 ID=EsuBft968_9|Name=EsuBft968_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MVKMRGPPGRRRRQQCPSHLCARRQTSSERWTGTMYTALGLLEGAVLSQ

mRNA from alignment at Scaffold_618:592954..594368+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft968_9a-0001 ID=EsuBft968_9a-0001|Name=EsuBft968_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1415bp|location=Sequence derived from alignment at Scaffold_618:592954..594368+ (Ectocarpus subulatus male Bft15b)
ATGGTGAAGATGCGCGGGCCTCCAGGCCGTCGGCGTAGGCAGCAATGTCC
ATCTCATCTTTGTGCGCGAAGGCAGACGTCATCAGAAAGGTGGACGGGCA
CTATGTACACGGCCCTAGGTTTGCTAGAAGGAGCTGTACTGTCTCAGTAA
CCTGGTTTTGCCGTCAAAGGAGGAGGGGACAGGTGGTGACGAGCTGATTG
GGCTGGTTGACCCTTCGGCGCGAGAATTTTTCGACCAAGAACCCTAAGTG
CAACCAGGGAGAAAGCGAGGAACCGACTGGGATAGACAGCAACGAGAGCG
TGCACGAAGCGGAGCGGGTCGAGTTTGGTCGTGCTAGGACTGGCCACAGC
GGCACCGGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCAGGCGGACGGC
ATCGAACCGTGGCGCACGGACAAACATCTCTTGTGTTGTCAATTATTTTT
TATACTTTTCTTAATATGACACAACGAGTCCATCTCTGTCATTGATAAGA
GTCAGACAGATTGACAATGGAATCATTGCGTCAGAAAAAACTACCTGCCT
GTATGCCTACGATTTCCCAGACAGCATATAGGGACATCTCCCCTGTGGAA
AACAGGCTCAACAAATCAGTTTGGAAGCTGTCTTGTGTGTCTCATATATG
TTATCTTGGGAAGGTGCAGACGAAGGTTTTGGGTACTGTTGGTTAGTCGG
GCGTTTTGTGTGTCGCACCCTGTTAGTTGTAGGGCATGCAATCTCCATTA
GTTTACAAACGTACTTTCCGTTTTTTTTCCTGAATACAGGTGTTGGGTGT
GTGTGATGGCGTCACTGGTTTCGTAGAGAGACGCGGCAGAGATGGCGCGG
TTAACCCGGGTGCTTTTAATTGTGTACCAGCATCGTGGAAGACACCTTCA
ATGTGGAACGATTCCTAGTCAGTGTCGATGTTTACACTGCTGTGCCTAAC
ACAGATGATTTGGATAGATTCGGGTGATTGTCAATTGCAATGATGGCATT
GGTTGGGTGTTCTTCTTCATTGTATGTCCACGGACTCATTCTGACAGCAC
TTCAGACAGCAGCTGCATGCCCCGAGCTTGTGTACCATGCAACATGGTGG
TATTATTGTACAGACAGCACTTCAGACAGCAGTACGCTGTAGTCGACAAA
CATTCATTTTGGTTAAATAAATGCGGGACGAGGGGGGTAATGCTGCTGCT
GTAGTCGATTTGTAGTGGGTGGGCGTGTAGTTCAGTTGTAAGCATGCAAA
CGTGCTGCATGCAGGGGTTGCAGGTGTACCTCCTCGGGCTTGCGTACCCT
TTTCTTGCTAATAGTTAGTGTGGGTGTTCTTTGGATCTTCTGATGGCTCT
AGCATTTTTGTGACCACGGACCGAGTCTTTGCTAGATTTTGGGAATAATA
GCAACTGACACGAGT

Coding sequence (CDS) from alignment at Scaffold_618:592954..594368+

>EsuBft968_9a-0001 ID=EsuBft968_9a-0001|Name=EsuBft968_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_618:592954..594368+ (Ectocarpus subulatus male Bft15b)
ATGGTGAAGATGCGCGGGCCTCCAGGCCGTCGGCGTAGGCAGCAATGTCC
ATCTCATCTTTGTGCGCGAAGGCAGACGTCATCAGAAAGGTGGACGGGCA
CTATGTACACGGCCCTAGGTTTGCTAGAAGGAGCTGTACTGTCTCAGTAA