EsuBft968_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft968_7a-0001
Unique Name	EsuBft968_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_618	contig	Scaffold_618:542394..545635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0QZP2
ProteomeId	EsuBft968_7
Protein domains	PR01217
Protein domains	IPR012337
Protein domains	PTHR11439
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	283
Evalue	4.68e-10
EggNOG OGs	COG0507@1\|root,COG2801@1\|root,KOG0017@2759\|Eukaryota,KOG0987@2759\|Eukaryota,2XG4E@2836\|Bacillariophyta
Date last modified	2016-06-13
Date creation	2016-06-13
Description	PIF1-like helicase
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft968_7a	EsuBft968_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_618 542394..545635 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_7a-0001	EsuBft968_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_618 542394..544013 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_7a-0001-exon	EsuBft968_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 542394..544898 +
EsuBft968_7a-0001-exon	agat-exon-10852	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 545178..545353 +
EsuBft968_7a-0001-exon	agat-exon-10851	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 545485..545635 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_7a-0001-cds	EsuBft968_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_618 542394..544013 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_7a-0001-exon	agat-three_prime_utr-23605	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 544014..544898 +
EsuBft968_7a-0001-exon	agat-three_prime_utr-23606	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 545178..545353 +
EsuBft968_7a-0001-exon	agat-three_prime_utr-23607	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 545485..545635 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_618:542394..545635+
coding sequence from alignment at Scaffold_618:542394..545635+

spliced messenger RNA

>EsuBft968_7a-0001 ID=EsuBft968_7a-0001|Name=EsuBft968_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2832bp|location=Sequence derived from alignment at Scaffold_618:542394..545635+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATAG
CTATGATGACACCCCATATGAAGACGTTTTCCCCGTGTTTATCCCAGAGA
GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT
GATTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC
TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC
TTGCCCACGCTTGCGAGCCTCTATTGAGAGAAACTGCCCAGCAGAGAGGC
ATCGTGCTCACCGGCAAGCTGGAACCGTCCACGGACTGCATGAAGGCGAA
GGGCAGGCGAGGGTCGGTGCCGCGGGGGACGGGAGCGCGGGCGCCCAAGC
CACTGGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTG
GGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAA
CAAGGTGTACGGNNNNNNNNNNNAGTACAACGGCGTCGTCGAGAGCGCCA
TCTGGCGCATTATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGCCCGT
GTGCTCAACGTCGACTTCGCTTCCATCCCCGGCCTCGACAGGCGCGGTGA
CCGTCTTTGGATGGAATCGGCGACATGGGCCGCCGACGCTCTCAACCAGT
CGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACC
GGCGAGCAGGGGCCGTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCAT
GCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTACT
ACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCACGGTCCTCAAG
GCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTC
GGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACAC
CCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCG
ACGCCTTCGACCGCAGCACTGCCGCCGCCAGCGCCCACGCCGTCGCCCGC
TCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAATGCCGCCGCCAGCGA
CCACGCCGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCG
CCGTCATCGTCGGCGACCCCCACTCCTGGCCAGCCGTTCTCTTCCTCTTG
GCTGTCACCGTCGGCGACCCCAGATCCTGACCAGCCGCCGCCGCCGCCGC
CGGACCCCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGC
CCGGGTACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTAC
GAGATCGGGCACAAGGCACAGCACAGGACTCATCTCGATGCTAGACAAGA
ATACTCTGGTGTCGATGCTGGAGGCTCGGAGCGCGAACGCAGGGAGCTGG
GGGGGGCGGAGGCCGGAGAGCCGGGGGGAGCGGGGACCGGAGGGCAGGCG
GGAGCACTCGCAGCTGTGGTCCCGGGAGCTGGAGGAGCGGGCTTTCCACT
CGCATTTGCCACGCTCCTAGCCAACCGGGAAGACATCGACGCCACGCTGC
GAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCTCATTGCCAGGCC
AGCGACCTTCGTGTCCCTAAGAACAAAGAGGCCATGGCGTCGGAGCACCG
GCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTGTTGGAAG
CGGGGACTTTTACTCCGGCGAAGTAACAATTATTAATGGAGAACGCAATT
AACGCTATGTGGGTATTCGATTGGAAGGCAGATGCGTTTGGATGGCCCAC
TAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGACATGCAGAGAGAGTACA
TTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGTTTCGTGTGTTAGG
GTGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTTTCGATGT
TGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTTTACATGCGTT
TGCCGCAGGGATGTGGAGATCTATCTGGAATGATTGTAAAACTAGGCAAG
AGTCTGTATGGCTTGAGACAGACATCTAGGCAGTGGCATGCAATGCTGAA
GAGGTGTTTGGTGGCGTGAGGTTTTGAGCAGTGCATGGCCGATGCTTGTG
TGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGACTTTGGTAGTACAT
GTAGATGACATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTTTGG
TGCCGACCTCAACAAGTCCGTGCCATTGAAAAACCTGGGAGAGTTGAGAT
GGTATTCTGGGTGCTTTTACGAGATGAACAAGGAGACCGGTAGGTTGACG
ATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAATATGGAGTAGT
GGGAGGGGTACGCTGATGCGGACTTTGCAAGCAAGGCAGCAGACCGTAGG
TCGGTATCAGGGGGGATCGTGACGTGTGGAGGAGGCGCTGTGTCTTGGTT
TTCCAGAACGCAAAAGTGTGTCACGCTTTCGACCACAGAAGCAGAGTACG
TCGCGCTAGGCGACGTAGTGAAGGAGATTTTATTTTGTTTTTGAGACAGA
TTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCATCCCCGTCTTC
GAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCATCTCAAACTC
GAACTCGAAGCACATAGATGTAAGGCACCATT

protein sequence of EsuBft968_7a-0001

>EsuBft968_7 ID=EsuBft968_7|Name=EsuBft968_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=539bp
MDLGDTSVLTDEQLMDSYDDTPYEDVFPVFIPESDAANVAGVLDSIDGGA
DFDLGAAALGPGASPFALGSTEKSVDINRFHRSLAHACEPLLRETAQQRG
IVLTGKLEPSTDCMKAKGRRGSVPRGTGARAPKPLGRVHLDLCGPLVPSL
GGNLYLFVAVDSASRWNKVYGXXXXYNGVVESAIWRIMKAGMAARRSAAR
VLNVDFASIPGLDRRGDRLWMESATWAADALNQSATKANPGRRSPHEMFT
GEQGPFRVLPFFQPGFMREDRRTKLDDQATLCYYLNGGDNHPSGTVTVLK
ASTGRVVYTNNVSWVTSAPAGEGGSAGITAAPTPPPFTPPVVSINFGPAP
TPSTAALPPPAPTPSPAPAPAAASPPAAMPPPATTPPPALTPSQPPSATS
PSSSATPTPGQPFSSSWLSPSATPDPDQPPPPPPDPAMPPLTAHAMRQLR
PGTKAEGMTDPRLPSRTRSGTRHSTGLISMLDKNTLVSMLEARSANAGSW
GGRRPESRGERGPEGRREHSQLWSRELEERAFHSHLPRS

mRNA from alignment at Scaffold_618:542394..545635+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft968_7a-0001 ID=EsuBft968_7a-0001|Name=EsuBft968_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3242bp|location=Sequence derived from alignment at Scaffold_618:542394..545635+ (Ectocarpus subulatus male Bft15b)
ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATAG
CTATGATGACACCCCATATGAAGACGTTTTCCCCGTGTTTATCCCAGAGA
GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT
GATTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC
TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC
TTGCCCACGCTTGCGAGCCTCTATTGAGAGAAACTGCCCAGCAGAGAGGC
ATCGTGCTCACCGGCAAGCTGGAACCGTCCACGGACTGCATGAAGGCGAA
GGGCAGGCGAGGGTCGGTGCCGCGGGGGACGGGAGCGCGGGCGCCCAAGC
CACTGGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTG
GGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAA
CAAGGTGTACGGNNNNNNNNNNNAGTACAACGGCGTCGTCGAGAGCGCCA
TCTGGCGCATTATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGCCCGT
GTGCTCAACGTCGACTTCGCTTCCATCCCCGGCCTCGACAGGCGCGGTGA
CCGTCTTTGGATGGAATCGGCGACATGGGCCGCCGACGCTCTCAACCAGT
CGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACC
GGCGAGCAGGGGCCGTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCAT
GCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTACT
ACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCACGGTCCTCAAG
GCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTC
GGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACAC
CCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCG
ACGCCTTCGACCGCAGCACTGCCGCCGCCAGCGCCCACGCCGTCGCCCGC
TCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAATGCCGCCGCCAGCGA
CCACGCCGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCG
CCGTCATCGTCGGCGACCCCCACTCCTGGCCAGCCGTTCTCTTCCTCTTG
GCTGTCACCGTCGGCGACCCCAGATCCTGACCAGCCGCCGCCGCCGCCGC
CGGACCCCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGC
CCGGGTACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTAC
GAGATCGGGCACAAGGCACAGCACAGGACTCATCTCGATGCTAGACAAGA
ATACTCTGGTGTCGATGCTGGAGGCTCGGAGCGCGAACGCAGGGAGCTGG
GGGGGGCGGAGGCCGGAGAGCCGGGGGGAGCGGGGACCGGAGGGCAGGCG
GGAGCACTCGCAGCTGTGGTCCCGGGAGCTGGAGGAGCGGGCTTTCCACT
CGCATTTGCCACGCTCCTAGCCAACCGGGAAGACATCGACGCCACGCTGC
GAGACCAGCGCCCGCCGGAGCAACGCCCTGACCTTCCTCATTGCCAGGCC
AGCGACCTTCGTGTCCCTAAGAACAAAGAGGCCATGGCGTCGGAGCACCG
GCACCTTTGGAGCGACTCTATGCAAAGGGAGTTTTATGGCTTGTTGGAAG
CGGGGACTTTTACTCCGGCGAAGTAACAATTATTAATGGAGAACGCAATT
AACGCTATGTGGGTATTCGATTGGAAGGCAGATGCGTTTGGATGGCCCAC
TAAGGTTAAGTCGAGACTTGTAGCGAGAGGTGACATGCAGAGAGAGTACA
TTGACTTTGGAGAGTTGTACGCGCCTACCGTTTCTGTTTCGTGTGTTAGG
GTGTTGGCTGCTTTGGCGTGCGAGTTGAACCTCGACTTGTGTTTCGATGT
TGAGCAAGCTTTTGTGCGTTCGGAGTTGGAGGAAGACGTTTACATGCGTT
TGCCGCAGGGATGTGGAGATCTATCTGGAATGATTGTAAAACTAGGCAAG
AGTCTGTATGGCTTGAGACAGACATCTAGGCAGTGGCATGCAATGCTGAA
GAGGTGTTTGGTGGCGTGAGGTTTTGAGCAGTGCATGGCCGATGCTTGTG
TGTTTCGTTTGATTGAGGATGGATGTGTTGTTTTGACTTTGGTAGTACAT
GTAGATGACATTTTTGCTGTGGGAGAGAGGGAGAGATGTGACAAGTTTGG
TGCCGACCTCAACAAGTCCGTGCCATTGAAAAACCTGGGAGAGTTGAGAT
GGTATTCTGGGTGCTTTTACGAGATGAACAAGGAGACCGGTAGGTTGACG
ATTTCTCAGCAGACTTTCACGGATGAGCTAGCAGCAGAATATGGAGTAGT
GGGAGGTAAGAGCGTTCCGATGTCTTCGGGGGTGAAGCTTTCTGATTTTG
ATGCGAATAAGGTGGCGACAGACATTCCGTTTCGTGAGCTGGTAGGATCG
TTGATGTGGCTGGCGACTCAGACTAGGCCAGACATTGCGAATGCGTAAGG
GCAGTAGCTAGGTATTGCGCATCTCCGAAGCTGATACACTGGAATGCAGC
GATGGATATTTAGGCTATGCGAGGAGGACGAGTCACTTTGGTATTTCGTT
TCAGAGAGGTACGGTGGAAGGATAAAGCTTGCAGGGGTACGCTGATGCGG
ACTTTGCAAGCAAGGCAGCAGACCGTAGGTCGGTATCAGGGGGGATCGTG
ACGTGTGGAGGAGGCGCTGTGTCTTGGTTTTCCAGAACGCAAAAGTGTGT
CACGCTTTCGACCACAGAAGCAGAGTACGTCGCGCTAGGCGACGTAGTGA
AGGAGATTTTGTTTTTGAGGCAGATTTGGCGTTTCATGTTGCCGCAGGTC
GGCATGCCGTGCATCCCCGTCTTCGAGGACAACCAGGGGGCGATTCAACT
AGCGCAGAANTTACGTCGCCCTAGGTGACGTAGTGAAGGAGATTTTGTTT
TTGAGACAGATTTGGCGTTTCATGTTGCCGCAGGTCGGCATGCCGTGCAT
CCCCGTCTTCGAGGACAACCAGGGGGCGATTCAACTAGCGCAGAACCCCA
TCTCAAACTCGAACTCGAAGCACATAGATGTAAGGCACCATT

Coding sequence (CDS) from alignment at Scaffold_618:542394..545635+

>EsuBft968_7a-0001 ID=EsuBft968_7a-0001|Name=EsuBft968_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1620bp|location=Sequence derived from alignment at Scaffold_618:542394..545635+ (Ectocarpus subulatus male Bft15b)
ATGGATCTTGGAGATACGAGTGTGCTCACCGACGAGCAGCTCATGGATAG
CTATGATGACACCCCATATGAAGACGTTTTCCCCGTGTTTATCCCAGAGA
GTGACGCTGCGAATGTGGCTGGTGTTTTGGATAGCATTGATGGGGGTGCT
GATTTTGACTTGGGTGCGGCCGCGCTTGGCCCTGGTGCGTCCCCGTTTGC
TCTTGGTTCGACTGAAAAGTCCGTTGACATCAACCGCTTCCACCGCTCCC
TTGCCCACGCTTGCGAGCCTCTATTGAGAGAAACTGCCCAGCAGAGAGGC
ATCGTGCTCACCGGCAAGCTGGAACCGTCCACGGACTGCATGAAGGCGAA
GGGCAGGCGAGGGTCGGTGCCGCGGGGGACGGGAGCGCGGGCGCCCAAGC
CACTGGGGCGTGTTCACCTGGACCTGTGTGGACCGCTGGTGCCTTCCCTG
GGCGGCAACCTCTACCTGTTCGTCGCCGTGGACAGCGCCTCGCGGTGGAA
CAAGGTGTACGGNNNNNNNNNNNAGTACAACGGCGTCGTCGAGAGCGCCA
TCTGGCGCATTATGAAGGCCGGCATGGCCGCTCGCCGCAGCGCTGCCCGT
GTGCTCAACGTCGACTTCGCTTCCATCCCCGGCCTCGACAGGCGCGGTGA
CCGTCTTTGGATGGAATCGGCGACATGGGCCGCCGACGCTCTCAACCAGT
CGGCGACCAAGGCCAACCCCGGGCGGCGCTCGCCGCACGAGATGTTCACC
GGCGAGCAGGGGCCGTTCCGCGTGCTGCCGTTCTTCCAGCCCGGCTTCAT
GCGCGAGGACCGCCGCACCAAGCTCGACGACCAGGCCACGCTCTGTTACT
ACCTGAACGGCGGCGACAACCACCCGAGCGGCACCGTCACGGTCCTCAAG
GCGTCCACCGGCCGCGTCGTCTACACCAACAACGTGTCGTGGGTGACGTC
GGCGCCAGCCGGCGAGGGGGGTTCCGCTGGTATCACCGCTGCGCCGACAC
CCCCCCCGTTCACGCCGCCGGTCGTCTCGATCAACTTTGGCCCAGCACCG
ACGCCTTCGACCGCAGCACTGCCGCCGCCAGCGCCCACGCCGTCGCCCGC
TCCCGCTCCCGCTGCCGCTTCGCCCCCTGCCGCAATGCCGCCGCCAGCGA
CCACGCCGCCGCCCGCTCTCACGCCTTCACAACCGCCCTCTGCCACTTCG
CCGTCATCGTCGGCGACCCCCACTCCTGGCCAGCCGTTCTCTTCCTCTTG
GCTGTCACCGTCGGCGACCCCAGATCCTGACCAGCCGCCGCCGCCGCCGC
CGGACCCCGCGATGCCCCCGCTTACGGCTCACGCCATGCGGCAGCTTCGC
CCGGGTACAAAGGCCGAGGGTATGACAGACCCGCGGCTGCCAAGCCGTAC
GAGATCGGGCACAAGGCACAGCACAGGACTCATCTCGATGCTAGACAAGA
ATACTCTGGTGTCGATGCTGGAGGCTCGGAGCGCGAACGCAGGGAGCTGG
GGGGGGCGGAGGCCGGAGAGCCGGGGGGAGCGGGGACCGGAGGGCAGGCG
GGAGCACTCGCAGCTGTGGTCCCGGGAGCTGGAGGAGCGGGCTTTCCACT
CGCATTTGCCACGCTCCTAG