EsuBft968_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft968_6a-0001
Unique NameEsuBft968_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:540741..542198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft968_6
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length107
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft968_6aEsuBft968_6aEctocarpus subulatus male Bft15bgeneScaffold_618 540741..542198 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_6a-0001-exonagat-exon-10850Ectocarpus subulatus male Bft15bexonScaffold_618 540741..541098 +
EsuBft968_6a-0001-exonagat-exon-10849Ectocarpus subulatus male Bft15bexonScaffold_618 541249..541441 +
EsuBft968_6a-0001-exonEsuBft968_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 541680..542198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_6a-0001-cdsEsuBft968_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 540741..541098 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_6a-0001-exonagat-three_prime_utr-23604Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_618 541867..542198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_6a-0001EsuBft968_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 540741..541866 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft968_6a-0001 ID=EsuBft968_6a-0001|Name=EsuBft968_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1070bp|location=Sequence derived from alignment at Scaffold_618:540741..542198+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGCGGCGGGGGGAGTGGGGGGGCATCCG
GGGGTCAAGACGGGGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACATGTTCAACGACGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGC
AACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGCTCGGGC
GGCGGCAGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAAGGGCAGCAGCA
CCACACCGAGGGAGGCCCGGGGCACGCGCGTTCTGGCCACAGAAGAGAGC
AGGCGTACGTTGTGTACTACGCCCACGATGATGGAGGCTACTACGAAGAC
CACGGCGACTACGACGACGGCTACTACTGCGAAGACGGCTACCACGACGC
CGGGTACGCCCACTACGCCGGCGGTGGGGACAGCTACAGCTACCCCTCAG
GGATAGGAGTGACGATTGGAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTG
AGTGTTAAATCTAGTGAGAGGCCGCCTGGTAGCGAGAGATGGGTAGCTGA
CTCAGGAGCCAGCAACAGTTTCACCAACAGCAGCCTACACATGTATGACC
TGCAAGAGATCCCCGCCATTAGGAATATGTCGTTGTAGGTGATGGTCGAC
TGCTACAAGTGCAAGCCATCGGTAGCATTAATCTTAGTTTTTTCCAGGAG
GATGAGAATGGTGAGAAAACGGCGATGTGTGTGAAGCTTACTGACGTGTC
TGTTGTAGAGAGCCTGAGTTTCAACTTGTTCTCAACGCATGCTGTTTCTC
TGAAGCAACCAATCCTGTACGACGAACGTGGTGCAACCCTACAAAATGGA
CTGCTCTTTGCTAGAGAGGAAAAAGCGTCTGCAGCGTATGCCATGCGGTT
GCCGTACGACCCATCTGCGATTATTGTAGACCCTGCTGCTTTGACCGCAT
TCGTGACTGCCCCCGATTCC
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protein sequence of EsuBft968_6a-0001

>EsuBft968_6 ID=EsuBft968_6|Name=EsuBft968_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MERERSKGERREVELALAASGMGRRGGGSGGASGGQDGGHAAAGGQNRDG
EKKNSDMFNDDPGGFCRYHQSELHTNEQCRLQQQLRRARSREGAAERRSG
GGSRGGGRWVRLEGQQHHTEGGPGHARSGHRREQAYVVYYAHDDGGYYED
HGDYDDGYYCEDGYHDAGYAHYAGGGDSYSYPSGIGVTIGESAASASSLL
SVKSSERPPGSERWVADSGASNSFTNSSLHMYDLQEIPAIRNMSL
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mRNA from alignment at Scaffold_618:540741..542198+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft968_6a-0001 ID=EsuBft968_6a-0001|Name=EsuBft968_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1458bp|location=Sequence derived from alignment at Scaffold_618:540741..542198+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGCGGCGGGGGGAGTGGGGGGGCATCCG
GGGGTCAAGACGGGGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACATGTTCAACGACGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGC
AACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGCTCGGGC
GGCGGCAGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAAGGGCAGCAGCA
CCACACCGGTAATGGTGGCGGTGGCTGGAGCTAAGCCTCACCCCCCCCGA
GACCTCTTCGTGGACGTGGGCCTGGTGGTCGTCTGGGGCGTCACCCGGGG
GGTCGTGGGCCCGCGGGACGCCACAGCAGAGACGGGCGTGCCGAGAGGGA
ACGGGCAGAGGGAGGCCCGGGGCACGCGCGTTCTGGCCACAGAAGAGAGC
AGGCGTACGTTGTGTACTACGCCCACGATGATGGAGGCTACTACGAAGAC
CACGGCGACTACGACGACGGCTACTACTGCGAAGACGGCTACCACGACGC
CGGGTACGCCCACTACGCCGGCGGTGGGGACAGCTACAGCTACCCCTCAG
GGTACGAAGACAGACGTTCATCTGACGGTGGCATCCACTACGTGTACTAC
CCTCCTGCCGGCGAAGATTCGTCATCCGAGCAGCCACGTCAGCCCCCCCC
CCGCGAGCAGCAGCACCACCGCTTCCTCCTCGTCCTCTATTCCTTCTCCT
GTCGCGCCTCCATCCTTGGGCTACCTCCACCTCTGCACGGCACAATCGGT
GCCCCTAGGCAAGTATCGCCCTGAAGATTTATTCAGTAGGATAGGAGTGA
CGATTGGAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTGAGTGTTAAATCT
AGTGAGAGGCCGCCTGGTAGCGAGAGATGGGTAGCTGACTCAGGAGCCAG
CAACAGTTTCACCAACAGCAGCCTACACATGTATGACCTGCAAGAGATCC
CCGCCATTAGGAATATGTCGTTGTAGGTGATGGTCGACTGCTACAAGTGC
AAGCCATCGGTAGCATTAATCTTAGTTTTTTCCAGGAGGATGAGAATGGT
GAGAAAACGGCGATGTGTGTGAAGCTTACTGACGTGTCTGTTGTAGAGAG
CCTGAGTTTCAACTTGTTCTCAACGCATGCTGTTTCTCTGAAGCAACCAA
TCCTGTACGACGAACGTGGTGCAACCCTACAAAATGGACTGCTCTTTGCT
AGAGAGGAAAAAGCGTCTGCAGCGTATGCCATGCGGTTGCCGTACGACCC
ATCTGCGATTATTGTAGACCCTGCTGCTTTGACCGCATTCGTGACTGCCC
CCGATTCC
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Coding sequence (CDS) from alignment at Scaffold_618:540741..542198+

>EsuBft968_6a-0001 ID=EsuBft968_6a-0001|Name=EsuBft968_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_618:540741..542198+ (Ectocarpus subulatus male Bft15b)
ATGGAGCGCGAGAGGAGCAAGGGGGAGAGGCGCGAGGTGGAGCTCGCTCT
CGCCGCGTCCGGCATGGGCCGGCGCGGCGGGGGGAGTGGGGGGGCATCCG
GGGGTCAAGACGGGGGTCACGCAGCAGCTGGCGGCCAAAATCGTGACGGA
GAGAAGAAAAATAGTGACATGTTCAACGACGACCCCGGCGGATTTTGCCG
CTACCACCAGTCCGAGCTTCACACCAACGAGCAGTGTCGTCTCCAGCAGC
AACTGCGGCGCGCGCGTTCGAGAGAGGGCGCCGCGGAACGCCGCTCGGGC
GGCGGCAGCCGCGGTGGCGGCCGATGGGTGAGGCTAGAAGGGCAGCAGCA
CCACACCGAGGGAGGCCCGGGGCACGCGCGTTCTGGCCACAGAAGAGAGC
AGGCGTACGTTGTGTACTACGCCCACGATGATGGAGGCTACTACGAAGAC
CACGGCGACTACGACGACGGCTACTACTGCGAAGACGGCTACCACGACGC
CGGGTACGCCCACTACGCCGGCGGTGGGGACAGCTACAGCTACCCCTCAG
GGATAGGAGTGACGATTGGAGAGTCTGCTGCGTCTGCTTCGTCTTTGCTG
AGTGTTAAATCTAGTGAGAGGCCGCCTGGTAGCGAGAGATGGGTAGCTGA
CTCAGGAGCCAGCAACAGTTTCACCAACAGCAGCCTACACATGTATGACC
TGCAAGAGATCCCCGCCATTAGGAATATGTCGTTGTAG
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