EsuBft968_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft968_4a-0001
Unique NameEsuBft968_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:531824..534465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft968_4
Protein domainsSSF56672
Protein domainsCoil
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1863
Hectar predicted targeting categoryother localisation
Evalue3.21e-151
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Cross References
External references for this mRNA
DatabaseAccession
GO0016779
GO0006278
GO0004519
GO0032197
GO0090305
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft968_4aEsuBft968_4aEctocarpus subulatus male Bft15bgeneScaffold_618 531824..534465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_4a-0001EsuBft968_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 531893..534465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_4a-0001-exonagat-exon-10843Ectocarpus subulatus male Bft15bexonScaffold_618 531824..532669 -
EsuBft968_4a-0001-exonagat-exon-10844Ectocarpus subulatus male Bft15bexonScaffold_618 532748..533273 -
EsuBft968_4a-0001-exonEsuBft968_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 533626..534037 -
EsuBft968_4a-0001-exonagat-exon-10845Ectocarpus subulatus male Bft15bexonScaffold_618 534387..534465 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_4a-0001-exonagat-three_prime_utr-23600Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_618 531824..531892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_4a-0001-cdsEsuBft968_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 531893..532669 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft968_4a-0001 ID=EsuBft968_4a-0001|Name=EsuBft968_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1863bp|location=Sequence derived from alignment at Scaffold_618:531824..534465- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGCACTGCTATACAA
TCGGGTGTGGAAAAACGAGTATAAGCCAAGTAGAAAGAGGGCGGGAAAGC
CGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATGG
AGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAAT
GTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGC
TAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAA
GGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTT
GGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAA
CGTCGGTTTCAGGAATGCTGTCTTGCGGAGATTTTGTCGGTATGTCGGAC
ACCCCGGACGGACTGCAACCGCAAATTGACGCGGCGAAGAATGAAAGAAC
TCGAGGCGGCGCAGATGAAAGCAGCGAAAATACGGTAGGGAGAATCATCC
AAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTG
AAAAAGGCATACGACATCGTATGGAGAAACGGGTTGTGGAAACAACGGTT
CAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAG
AGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTC
GACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTT
CCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGG
GAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCG
GATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAAT
TGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTA
AAAAGAGTGCCGTCATGTACACATACCTTGGAGTAGAGATCGCAAAAGAC
TGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACG
AGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCA
TCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCC
GGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGC
GCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTA
ATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGTTCGGGAAGA
GACGCGAGGAAGCTGACATTACAGTATCACATGTGCGGGATGGGAGAGGA
GAGGTTGCCGACAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGG
GTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGG
CTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTT
CAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGA
GGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAG
GAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAAC
AAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTC
GACGAAGACATAGGACGGTAGACGACGAAGATGACGAGAGGTGATTACGG
CTCGGAATGCGACGACCGTGTTCATGTAGTATAGTCGCGGAATGTCCGTT
GTACAAGAAGGAG
back to top

protein sequence of EsuBft968_4a-0001

>EsuBft968_4 ID=EsuBft968_4|Name=EsuBft968_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=597bp
MKFGGKGMIQLMALLYNRVWKNEYKPSRKRAGKPTYCFFLDVKKAYDTVW
RNGLWKQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQ
GCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLSCGDFVGMSD
TPDGLQPQIDAAKNERTRGGADESSENTVGRIIQGRKRAGKPTYCFFLDV
KKAYDIVWRNGLWKQRFKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFF
DIEQGVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTETSVSGMLFA
DDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVKKSAVMYTYLGVEIAKD
CSWNAHMSKVAEKGKSRAGKLHPILANRHLDTRIKLTVLKSVIVPPLEYA
GEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGR
DARKLTLQYHMCGMGEERLPTIVWEAKWANKKRGRQPTEWVKVVEDVWKG
LDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLK
EGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDDEDDER
back to top

mRNA from alignment at Scaffold_618:531824..534465-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft968_4a-0001 ID=EsuBft968_4a-0001|Name=EsuBft968_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2642bp|location=Sequence derived from alignment at Scaffold_618:531824..534465- (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGCACTGCTATACAA
TCGGGTGTGGAAAAACGAGTATAAGCCAAGTAGATGGAGGGAAGGAGTGG
TCGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTCCAGGGAGAATCATCCAACGTAGGTAGAAAGAGGGCGGGAAAGCC
GACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATGGA
GAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATG
TGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCT
AGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAG
GTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTG
GAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAAC
GTCGGTTTCAGGAATGCTGTCTTGCGGAGATTTTGTCGGTATGTCGGACA
CCCCGGACGGACTGCAACCGCAAATTGACGCGGCGAAGAAGTTTACTGAT
AAGTGGAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTTGTACCGCCGC
TAGAGTTCGCTGGAGACGTATGGGAAGGAAATAAGAGGGTAGTGAAAGAA
CTCGAGGCGGCGCAGATGAAAGCAGCGAAAATACGGTAGGGAGAATCATC
CAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGT
GAAAAAGGCATACGACATCGTATGGAGAAACGGGTTGTGGAAACAACGGT
TCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACA
GAGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTT
CGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGT
TCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAG
GGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGC
GGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAA
TTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTT
AAAAAGAGTGCCGTCATGGTATGCAACGAGAACAAGAAGGAACCAGCAGA
ACATAGATGGAAGTGGGGGATCAAGGAGATTGCAGTAGTGGACTAGTACA
CATACCTTGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATG
TCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAGGGAAGCTGCATCCAAT
ACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGA
GCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTATGGGAAGGAAAT
AAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAAC
CATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCGTGAGGGCAGAAT
TGGGGATCCAATCCCTACGTTCGGGAAGAGACGCGAGGAAGCTGACATTA
CAGTATCACATGTGCGGGATGGGAGAGGAGAGGTTGCCGACAATTGTATG
GGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAACCCACGGAATGGG
TCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAA
ACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTGTTGC
TTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGG
AGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGAC
TACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAG
GACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACGGTAG
ACGACGAAGATGACGAGAGGTGATTACGGCTCGGAATGCGACGACCGTGT
TCATGTAGTATAGTCGCGGAATGTCCGTTGTACAAGAAGGAG
back to top

Coding sequence (CDS) from alignment at Scaffold_618:531824..534465-

>EsuBft968_4a-0001 ID=EsuBft968_4a-0001|Name=EsuBft968_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1794bp|location=Sequence derived from alignment at Scaffold_618:531824..534465- (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGGGAAGGGGATGATCCAGCTGATGGCACTGCTATACAA
TCGGGTGTGGAAAAACGAGTATAAGCCAAGTAGAAAGAGGGCGGGAAAGC
CGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACACCGTATGG
AGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGGGGAAAAT
GTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGC
TAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAA
GGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTT
GGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAA
CGTCGGTTTCAGGAATGCTGTCTTGCGGAGATTTTGTCGGTATGTCGGAC
ACCCCGGACGGACTGCAACCGCAAATTGACGCGGCGAAGAATGAAAGAAC
TCGAGGCGGCGCAGATGAAAGCAGCGAAAATACGGTAGGGAGAATCATCC
AAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTCTTCCTGGACGTG
AAAAAGGCATACGACATCGTATGGAGAAACGGGTTGTGGAAACAACGGTT
CAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAG
AGTGCACGAAAAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTC
GACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTT
CCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGG
GAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCG
GATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAAT
TGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTA
AAAAGAGTGCCGTCATGTACACATACCTTGGAGTAGAGATCGCAAAAGAC
TGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACG
AGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCA
TCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCC
GGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGC
GCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTA
ATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGTTCGGGAAGA
GACGCGAGGAAGCTGACATTACAGTATCACATGTGCGGGATGGGAGAGGA
GAGGTTGCCGACAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGG
GTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGG
CTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTT
CAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGA
GGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAG
GAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAAC
AAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTC
GACGAAGACATAGGACGGTAGACGACGAAGATGACGAGAGGTGA
back to top