EsuBft968_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft968_3a-0001
Unique NameEsuBft968_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:506633..510123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft968_3
Protein domainsSignalP-TM
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_002300.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft968_3aEsuBft968_3aEctocarpus subulatus male Bft15bgeneScaffold_618 506633..510123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_3a-0001EsuBft968_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 506633..510123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_3a-0001-exonagat-exon-10841Ectocarpus subulatus male Bft15bexonScaffold_618 506633..506887 -
EsuBft968_3a-0001-exonEsuBft968_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 507340..507452 -
EsuBft968_3a-0001-exonagat-exon-10840Ectocarpus subulatus male Bft15bexonScaffold_618 507756..507969 -
EsuBft968_3a-0001-exonagat-exon-10839Ectocarpus subulatus male Bft15bexonScaffold_618 508293..508396 -
EsuBft968_3a-0001-exonagat-exon-10842Ectocarpus subulatus male Bft15bexonScaffold_618 508745..508964 -
EsuBft968_3a-0001-exonagat-exon-10838Ectocarpus subulatus male Bft15bexonScaffold_618 509923..510123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_3a-0001-cdsEsuBft968_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 506633..506887 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft968_3a-0001 ID=EsuBft968_3a-0001|Name=EsuBft968_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1107bp|location=Sequence derived from alignment at Scaffold_618:506633..510123- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCAGCACGATGAGCACCATCGCCACGACGAAAACGCTCTTCGC
CGTGTACTTCGTTGGCACCGCCGTCGCCAACGTGGAGCACACCATGGCCT
CCCGCGCTGCAGCAACGTACGGCGCCAGCTCCCTCGACGGCTTCGATCCG
CTCCACCGCTTTCTGGACCCGAACCGCACCCTTTTCGGCAGGACCCTGCA
GGCAGCGGATGACGATGAAGATGACGACGTGGAACAACTCTGTTTTGCAG
AATACAACGCTTGCGAGGAAGACTCCGCGTGTACGGCCTGCGTTGATTTA
GTCACCATGGACGGAACGTGCAATCCCGAGGACATCAATGACTGCGCCGC
GATAGCCGACTACTTGTGCTGCATTGTTGGGCATGACTGCAGCGACAACG
AGTTGCTCGCCGATTACTTGAGCTGCCAGGTCGGAATATGCACGTTCGCC
GACTTCTGTGATCATTCGACGACATTCGACAGCGATGACAACAACGGGGG
CGGTAGCGACGGAGACGACATCGAGGTGGACGACTTTGAAGACAATGATG
CAGAATTGTGCCCTACCGAGATGAGCGCCTGCATCGAAGACTCGACCTGT
ATGGCGTGCTTCAATGGGGTTGCCGTCGACGAGACGTGCGATACCGGCAA
CATGACGGACTGCGCTAACGTGGCCGACTACTTGTGCTGCATCGTCGGGG
ATGCCTGCAGCGACAACGAGTATCTTGTGGACTACGTCAACTGCGCGGCC
GAGATAGAATCTTGCACTTTGACGGACTTCTGCAACCACACGACGTCAAC
CGACGGTAACGACGACGTCGACGGCGGTGGTGCCGGCGATGACGACGCTA
CGGAAATGGTCACTTCCTGCGCGGACGAAATCGCAACCTGCGCCCAGGAC
GCCGACTGCCTGTCCTGCATGATGGCACCATCGGTCAACGACGGGTCCGA
GTCGTGCGAGGACATGGTCACCGCCGATACCCCGTGCTCCGGCGTGGAAA
ACATGCTCTGCTGCCTTTACGGGGACACCGAAACCTGTCGAGACAATGCT
CCGTTCCTCGGATTCGCCAGTGAGTCTCCAGGAGATAGTGGTAATTTCCA
TCTGTAG
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protein sequence of EsuBft968_3a-0001

>EsuBft968_3 ID=EsuBft968_3|Name=EsuBft968_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=368bp
MSVSTMSTIATTKTLFAVYFVGTAVANVEHTMASRAAATYGASSLDGFDP
LHRFLDPNRTLFGRTLQAADDDEDDDVEQLCFAEYNACEEDSACTACVDL
VTMDGTCNPEDINDCAAIADYLCCIVGHDCSDNELLADYLSCQVGICTFA
DFCDHSTTFDSDDNNGGGSDGDDIEVDDFEDNDAELCPTEMSACIEDSTC
MACFNGVAVDETCDTGNMTDCANVADYLCCIVGDACSDNEYLVDYVNCAA
EIESCTLTDFCNHTTSTDGNDDVDGGGAGDDDATEMVTSCADEIATCAQD
ADCLSCMMAPSVNDGSESCEDMVTADTPCSGVENMLCCLYGDTETCRDNA
PFLGFASESPGDSGNFHL
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mRNA from alignment at Scaffold_618:506633..510123-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft968_3a-0001 ID=EsuBft968_3a-0001|Name=EsuBft968_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3491bp|location=Sequence derived from alignment at Scaffold_618:506633..510123- (Ectocarpus subulatus male Bft15b)
ATGTCCGTCAGCACGATGAGCACCATCGCCACGACGAAAACGCTCTTCGC
CGTGTACTTCGTTGGCACCGCCGTCGCCAACGTGGAGCACACCATGGCCT
CCCGCGCTGCAGCAACGTACGGCGCCAGCTCCCTCGACGGCTTCGATCCG
CTCCACCGCTTTCTGGACCCGAACCGCACCCTTTTCGGCAGGACCCTGCA
GGTAAACATGTTGTGCCGTTCAGAAGGTCTATTTCTACCGCAATATGTAA
GGGCAAAACAAGGTAGAAAAAAAAATGTAGTTGCGTTCGGTTCTAGTTCC
GACGCGGGCGCCGAGCAGCCAGCAGCCCTACGGTCGGTTCGTGCCACGTT
TGGCGCTCGATCGACGGTTCACTTACTGCGCGGTAGTGCTCTTGTTGTCG
CTGTAGACATTATGATTTTATCCATGGTGTCGATTGGCAACGAAATTTTT
GCATCAGGTGTGCGTATTCCTTGCCTTGTGTGCCTAGCGCCCATTGTGTG
TGGGTGACTGCTCCCCTAATCAACCGAACATTCTGGGCAGAATGCAAAGG
AAAGAGAGCGAGGTGTCGAACCTACTGGCGAAGCAGCCCCAACAACCGAA
ACCTCAGCGTCGAAGGCGTATCGCGCACCAGTGCCGCGGTGGTACAACTG
CTCTCTGCCTGGATCACAATAGTTTCGACGACCAATCGAAGTGCCTTTCA
TCAATGATGTCCATTTTTACGAATATTTGGAGGATGTCGTGGACAGGTCG
AGCACGTACTGCGCAATTGTTCTCCATGTCAGGAACAAGCCAGCCTACAG
ATCAATCAGACTTTCCCATCGATCAATCAATATTGGTTTGGTCGCCGTTG
GCAGCAACGATCCGAAGTAATACTGCCACACCCACCCCACAGACCCACAC
CAATTCCTCCTGCGACCACATCGACGGCGAAAGCGAAAACACCAACAATG
ATACGATACAAGACACAGCTACGTGCCGTTTCAGGTTGCTACAGCTCCTC
GTAGAGTGCAGATGGTTCACTGGATCATTGATGTGATTCTTTCAACGTTC
GAGAGACCAACGACCAACGAAGGAAGGAAGGTTGCCCAGACCTTTGTCCA
CCCTCGTCCCACCAAAGAAGACAAAAAGAAGACCATTGGACTCTTTTTTT
CTCGAGCAGGCAGCGGATGACGATGAAGATGACGACGTGGAACAACTCTG
TTTTGCAGAATACAACGCTTGCGAGGAAGACTCCGCGTGTACGGCCTGCG
TTGATTTAGTCACCATGGACGGAACGTGCAATCCCGAGGACATCAATGAC
TGCGCCGCGATAGCCGACTACTTGTGCTGCATTGTTGGGCATGACTGCAG
CGACAACGAGTTGCTCGCCGATTACTTGAGTGAGTTAGACGTATCTTCCT
GGCCTTAACTGTCACTGTTTGAACTTTGGATGATGTTGGCACGGCGTTTC
GTACCAACTCTTGGCTGTACTTCGGGGATGTTCTTGAACAGCGCGCAGGT
GATATCGCTCCCCCTGGCCTCCGACGCCAGCAACGACACCCAGGACCGTT
AGCGTCCCTACCAATACTAAGAACGTCAGCACCAATGTCCAGCAGCAGCA
GAAGTTCGTCGAGCACACCGTCATCAATCAAACATCAACAGCAGCAAGAA
CAACGCCGTCAGCACCACTAACCTGGTTCCGTTTCCCTTTGTTTGTCTAC
CCCTGTCGCCGTCCAACTGATTTTCAGGCTGCCAGGTCGGAATATGCACG
TTCGCCGACTTCTGTGATCATTCGACGACATTCGACAGCGATGACAACAA
CGGGGGCGGTAGCGACGGAGACGACATCGAGGTATCTCCGAAAAAGACAG
CGCGTATGCGGCCCATGCACCAAAACACGCGGAAGAAACCATGTGCGAAA
CGACGGAACACGAACAAGCTGCTGCTTCTAAATCCACTTCTGCTGCCAAC
CCTGCTGCTCCTGCTGCTACAGCTACGGCGCCTTCAATTGGAAGAGTTTT
CTTCTGCCATAGCACATCCTGATTCGCTGGGCAACCATGAGGAAACCTCG
GCGACTATGTAGATCAACCAGTAGACCACCACCCCACCCCCTGTCAAACC
CCACCGACGACAAATACCCACCGTTGACTTCCGTCGACAAACGAAACTCA
ACAGGTGGACGACTTTGAAGACAATGATGCAGAATTGTGCCCTACCGAGA
TGAGCGCCTGCATCGAAGACTCGACCTGTATGGCGTGCTTCAATGGGGTT
GCCGTCGACGAGACGTGCGATACCGGCAACATGACGGACTGCGCTAACGT
GGCCGACTACTTGTGCTGCATCGTCGGGGATGCCTGCAGCGACAACGAGT
ATCTTGTGGACTACGTCAGTGAGTGCGGCTCGCATTTGTCCCGGTCATGC
TAGACAAGCTGAAACCTTGCAAAACAGCCTGAAGCGATGAGTTTGGTACC
GTTTGGTCTTCACCGTACGGTGGTCAAGGGAAGGGTGTTTGAACAGCGGG
CAGCATCGACCATCTGGTCTCACAAAGTCAACAATAGCAGTACCGAAATC
AATGTCGACGAAAAGACGCACGATCATTTTGACAACAACAGATAACAACC
CTCGACATGCATACGTGCTGCTCCTCCCACCACTGGTGTTGTGGAATCAT
CCCTTTCGACGTGACAATCAGACTGCGCGGCCGAGATAGAATCTTGCACT
TTGACGGACTTCTGCAACCACACGACGTCAACCGACGGTAACGACGACGT
CGACGGCGGTGGTGCCGGCGATGACGACGCTACGGTACGTTTATCCAAGC
TGGACGGTGTGGTGCACATCATCCGAACATCTCCTTGTGAATGCGATTGC
AGTATTCCAGATTTTGTTTTTTGCTTATATGCGACACAGTGCTGCTGCCA
AGTGGTACGGGCATGTCCTGAGAAACCCCCCGTGAAAGCGCCGCTGATCA
ACAAAAACTTTGAGAATCCCCAGAGTACAATCTGGTACTTGTTGCACGAA
TGGGGCATCCACTAGGCACGACATGCACACCTCACTACGTCCAGGGCGCT
GGACACAAGAACACCGAAGAAGCATGGCACATCCTCTAGCAGTACTCTTT
GATTAAGATATACGTAGCACCCACATACACCAAACAACTCCTTCATCAAG
AGCACAGTTATATAGAGCTCACCAGACCAACGTGGTACTTTACACGCTCA
CACACATCTTGTCCTTGCTGCCACCATCCCCCACAGGAAATGGTCACTTC
CTGCGCGGACGAAATCGCAACCTGCGCCCAGGACGCCGACTGCCTGTCCT
GCATGATGGCACCATCGGTCAACGACGGGTCCGAGTCGTGCGAGGACATG
GTCACCGCCGATACCCCGTGCTCCGGCGTGGAAAACATGCTCTGCTGCCT
TTACGGGGACACCGAAACCTGTCGAGACAATGCTCCGTTCCTCGGATTCG
CCAGTGAGTCTCCAGGAGATAGTGGTAATTTCCATCTGTAG
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Coding sequence (CDS) from alignment at Scaffold_618:506633..510123-

>EsuBft968_3a-0001 ID=EsuBft968_3a-0001|Name=EsuBft968_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1107bp|location=Sequence derived from alignment at Scaffold_618:506633..510123- (Ectocarpus subulatus male Bft15b)
ATGTCCGTCAGCACGATGAGCACCATCGCCACGACGAAAACGCTCTTCGC
CGTGTACTTCGTTGGCACCGCCGTCGCCAACGTGGAGCACACCATGGCCT
CCCGCGCTGCAGCAACGTACGGCGCCAGCTCCCTCGACGGCTTCGATCCG
CTCCACCGCTTTCTGGACCCGAACCGCACCCTTTTCGGCAGGACCCTGCA
GGCAGCGGATGACGATGAAGATGACGACGTGGAACAACTCTGTTTTGCAG
AATACAACGCTTGCGAGGAAGACTCCGCGTGTACGGCCTGCGTTGATTTA
GTCACCATGGACGGAACGTGCAATCCCGAGGACATCAATGACTGCGCCGC
GATAGCCGACTACTTGTGCTGCATTGTTGGGCATGACTGCAGCGACAACG
AGTTGCTCGCCGATTACTTGAGCTGCCAGGTCGGAATATGCACGTTCGCC
GACTTCTGTGATCATTCGACGACATTCGACAGCGATGACAACAACGGGGG
CGGTAGCGACGGAGACGACATCGAGGTGGACGACTTTGAAGACAATGATG
CAGAATTGTGCCCTACCGAGATGAGCGCCTGCATCGAAGACTCGACCTGT
ATGGCGTGCTTCAATGGGGTTGCCGTCGACGAGACGTGCGATACCGGCAA
CATGACGGACTGCGCTAACGTGGCCGACTACTTGTGCTGCATCGTCGGGG
ATGCCTGCAGCGACAACGAGTATCTTGTGGACTACGTCAACTGCGCGGCC
GAGATAGAATCTTGCACTTTGACGGACTTCTGCAACCACACGACGTCAAC
CGACGGTAACGACGACGTCGACGGCGGTGGTGCCGGCGATGACGACGCTA
CGGAAATGGTCACTTCCTGCGCGGACGAAATCGCAACCTGCGCCCAGGAC
GCCGACTGCCTGTCCTGCATGATGGCACCATCGGTCAACGACGGGTCCGA
GTCGTGCGAGGACATGGTCACCGCCGATACCCCGTGCTCCGGCGTGGAAA
ACATGCTCTGCTGCCTTTACGGGGACACCGAAACCTGTCGAGACAATGCT
CCGTTCCTCGGATTCGCCAGTGAGTCTCCAGGAGATAGTGGTAATTTCCA
TCTGTAG
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