EsuBft968_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft968_2a-0001
Unique Name	EsuBft968_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_618	contig	Scaffold_618:502989..505018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft968_2
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	2030
Hectar predicted targeting category	other localisation
Evalue	1.23e-235
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
EC	3.1
GO	0004518
GO	0016740

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a	EsuBft968_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_618 502989..505018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a-0001-exon	EsuBft968_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_618 502989..505018 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a-0001-exon	agat-five_prime_utr-15357	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_618 502989..503008 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a-0001-cds	EsuBft968_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_618 503009..504997 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a-0001-exon	agat-three_prime_utr-23599	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_618 504998..505018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft968_2a-0001	EsuBft968_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_618 503009..504997 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_618:502989..505018+
coding sequence from alignment at Scaffold_618:502989..505018+

spliced messenger RNA

>EsuBft968_2a-0001 ID=EsuBft968_2a-0001|Name=EsuBft968_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2030bp|location=Sequence derived from alignment at Scaffold_618:502989..505018+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGATAGTCAACGAGTTCATGAAGTTTGGGGAGAAGGGGATGATCCAA
CTGATGGTATTGCTGTACAATTGGGTGTGGAAAAGCGAGTATACGCCAAG
TAGATGGACGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGA
CTGACCCAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAA
GTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCG
GTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACG
ATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGAC
ACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTAT
GTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGT
TTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATG
GTTTGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGG
GATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGA
TCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAG
GGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCT
CGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGC
TAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAA
CTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAG
GCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTAC
GGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGG
ATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAA
CAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACG
TATGGAAGGGGCTCGACATCGGCGAAGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGA
ACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGG
AAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGA
AGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGA
ACAATGCTCCGTCAGGACGCGTGGTCAATGGCCTAGCCGCTAAGGCATGC
AAAACATAAGAGTACGCCCCCCCCCCCCCC

protein sequence of EsuBft968_2a-0001

>EsuBft968_2 ID=EsuBft968_2|Name=EsuBft968_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=662bp
MKFGEKGMIQLMVLLYNWVWKSEYTPSRWTEGVVVNLFKKGDKTDPGNYR
GITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTV
GRIIQGRKRAGKPTYCFFLDVKKAYDTVWRNGLWKQLSKYGIKGKMWRVL
KKMTECTKSAVMLDGELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVE
AVRKGVKVGDTETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRL
SANVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSW
NAHMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPPLEYAGEV
WEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSGRDAR
KLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWKGLDI
GEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGI
GFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFKCDCGF
ECEDRVHVVAECPLYKKEREVYVTELGKIDGTYREMFEAWNREERTVAVL
GHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSCGNNAPSGR
VVNGLAAKACKT

mRNA from alignment at Scaffold_618:502989..505018+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft968_2a-0001 ID=EsuBft968_2a-0001|Name=EsuBft968_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2030bp|location=Sequence derived from alignment at Scaffold_618:502989..505018+ (Ectocarpus subulatus male Bft15b)
ATGGGATAGTCAACGAGTTCATGAAGTTTGGGGAGAAGGGGATGATCCAA
CTGATGGTATTGCTGTACAATTGGGTGTGGAAAAGCGAGTATACGCCAAG
TAGATGGACGGAAGGAGTGGTTGTGAACTTGTTTAAGAAAGGAGACAAGA
CTGACCCAGGAAACTACAGGGGGATCACACTGTTGAACACAGTAGGAAAA
GTGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATTGGAGAAGGA
ACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGAGGGGGTGCG
TAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCG
GGAAAGCCGACGTACTGCTTCTTCCTGGACGTGAAAAAGGCATACGACAC
CGTGTGGAGAAATGGGTTGTGGAAACAACTGTCCAAATACGGGATCAAGG
GGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCG
GTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGT
CCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACG
ATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGAC
ACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTAT
GTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGT
TTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATG
GTTTGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGG
GATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGA
TCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAG
GGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCT
CGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGC
TAGAGTACGCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAA
CTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAG
GCGCACAAGTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTAC
GGTCGGGAAGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGG
ATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAAA
CAAAAAGAGGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACG
TATGGAAGGGGCTCGACATCGGCGAAGATGAAACGCTGGAAACGGAGGGT
CTACAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGA
ACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACG
GAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATG
GATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCT
TCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGT
TCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGTCGCG
GAATGTCCGTTGTACAAGAAGGAGAGGGAAGTGTACGTGACTGAGCTGGG
AAAAATAGATGGAACGTACAGGGAGATGTTTGAGGCATGGAATAGAGAGG
AAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGCGGGA
AGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCCACCT
TTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGTGGGA
ACAATGCTCCGTCAGGACGCGTGGTCAATGGCCTAGCCGCTAAGGCATGC
AAAACATAAGAGTACGCCCCCCCCCCCCCC

Coding sequence (CDS) from alignment at Scaffold_618:502989..505018+

>EsuBft968_2a-0001 ID=EsuBft968_2a-0001|Name=EsuBft968_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1989bp|location=Sequence derived from alignment at Scaffold_618:502989..505018+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTGGGGAGAAGGGGATGATCCAACTGATGGTATTGCTGTACAA
TTGGGTGTGGAAAAGCGAGTATACGCCAAGTAGATGGACGGAAGGAGTGG
TTGTGAACTTGTTTAAGAAAGGAGACAAGACTGACCCAGGAAACTACAGG
GGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCTGAA
CGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCC
AGGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTA
GGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTT
CTTCCTGGACGTGAAAAAGGCATACGACACCGTGTGGAGAAATGGGTTGT
GGAAACAACTGTCCAAATACGGGATCAAGGGGAAAATGTGGAGAGTGCTG
AAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACT
GTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGT
CCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAGTCGTAGAG
GCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCGGTTTCAGG
AATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGAC
TGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTG
TCTGCCAACGTTCAGAAGAGTGCCGTCATGGTTTGCAACGAGAACAAGGA
GGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAG
TGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGG
AATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAA
GCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGA
CGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGAAGTA
TGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGATGAA
AGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCAGCCG
TGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGCGAGG
AAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGTTGCC
GAGAATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGACAAC
CCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGACATC
GGCGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAA
GATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGAAT
CCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATA
GGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAA
GGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGAC
ATAGGACGGTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTC
GAATGCGAAGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAA
GGAGAGGGAAGTGTACGTGACTGAGCTGGGAAAAATAGATGGAACGTACA
GGGAGATGTTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTG
GGGCATAGGAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGA
CAGACTAGGGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAAC
GATTGGCCATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCAGGACGC
GTGGTCAATGGCCTAGCCGCTAAGGCATGCAAAACATAA