EsuBft968_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft968_13a-0001
Unique NameEsuBft968_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_618contigScaffold_618:620976..622895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog3760.EMJ14281
ProteomeIdEsuBft968_13
Protein domainsSSF56672
Protein domainsPTHR10178
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon 412 os:drosophila melanogaster gn:pol pe:3 s [Automatic annotation]
Nb exon1
Max annot lvl35493|Streptophyta
Length1920
Hectar predicted targeting categoryother localisation
Evalue1.84e-30
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37RRH@33090|Viridiplantae,3G8MV@35493|Streptophyta,4JM10@91835|fabids
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K09250
Descriptiontransposition, RNA-mediated
COG categoryH
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13aEsuBft968_13aEctocarpus subulatus male Bft15bgeneScaffold_618 620976..622895 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13a-0001-exonEsuBft968_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_618 620976..622895 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13a-0001-exonagat-three_prime_utr-23594Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_618 620976..621817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13a-0001-cdsEsuBft968_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_618 621818..622549 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13a-0001-exonagat-five_prime_utr-15350Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_618 622550..622895 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft968_13a-0001EsuBft968_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_618 621818..622549 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft968_13a-0001 ID=EsuBft968_13a-0001|Name=EsuBft968_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1920bp|location=Sequence derived from alignment at Scaffold_618:620976..622895- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACTG
TAGTAAGGAGAAGGCGGCAGTCGAGGGCAGCCGGGTGATAGCTCGCATGA
TTGCACTCAATGTTCGCGACAAGCCGGCTTTCGATTCGCTGTTTGACATC
GCCCCCTCCGCTGCCGACCAACCCCTGCCTCCCCGTGGACCGCGCGCCCC
GAGCCCGTCCCCACCTAATGGGGCATCCGTGCCGCGTGTTCGCGTAGAGG
ACGCCAACCTGGGGACGCTGGGGTCGCTCAAGAAGCATCAACTCGTCAAC
GTTCTCGCAGCGTTCATCGAGGACGGCCTGTTTCCGATCGACCCCAAGCG
AGTGCCGGCCTGCATCAACGGTGAGCTTGAGCTTCCTCTGATCAACGAGT
TTTGCACACCTTTTGCAGCCAAGCAAAGGCGAGTCTCTCCGGAAGAACGA
CGCATGATCAGGGCAGAGATTCAGCAGTTGGTAGACCGAGGAGTGATCCG
TCAATCCATGTCTCCTTGGGCTGCCCAGTGCTTGTGCGTCAAGAAGAAGG
ATGGTACGCTGCGACTGTGCATCGACTGGCGTGAACTCAACAAACTCTTG
GTCTCCGATAGTGGGGGTTTGGGTGACATGCAGACGATATTCGATGGGTT
GAAGGGGAAGAAGTATTTCACTCAGCTAGACCTCGCCTCCGGTTTTCACC
AGATGGAAATCGCCGAGAAATACCGTTCCAAGACGGCCTTTCGAGATGCG
GATGGAATGCTTTGGGAATTCACGCGCGCGGGTTTTGGCCTGACGGTGCT
TCCGGCGGCCTTCACTCGTAGAGTATAGTCGGCTCTGGGGCATCTAGCGG
GCGTGTTTAGCTGGCTTGACGACATTCGCATCGCTAGCGACACATGGGAA
GAACATCTCGCCACTCTGACGCTCGTTCTGAACCGCCTTCTGGCTGCGGG
GCTGTCCGTAAACTTCGCAAAGTGCATTTTCGGCGCAGCATCGCAGGAAT
TCCTCGGCATGATCATCGACAGCACGGGCCTGTACCCTGCTCCGTCTAAG
CTAGATGCAATCGCACGCATGCCTCGCTCACACACCGTAGAAGAGCTGCG
CACGTTTTTGGGTCTTACCGGCTACTTGCGTCAGTTTGTACCCAACTACA
GTTTGACTGCCGCTCCGCTCACCAACATCCCGCGCAACAAAGCCTTCGCT
TCGAAACGTGCACGCAAGCTTCCTATCCCGTGGTCCGTAGCTGAGGAAGA
CGCCTTCCAGTCTTTGCGAGAAACGTTGGCTTCCCCGAAGGTCCTCGCTT
TCCCTGACCTTGAGCGTCCGTTCGAACTGCACACGGATGCTAGCACGCTG
GGTGTAGGAGCTTCGCTCATGCAGACAATCGATGGTTTCACCAGAGCGGG
GCGTTCGCGAGCCACCGGTTTTCACAAACCGATGCTAGACGCGGGCTCAC
GGAAATAGAATGCATGGGGGTCCTCTGGGCTATAGACCACTTCCGGCCGT
ACCTAGCGGGTAGACGGTTCAAATTGGTGACAGACTGTTCTGCCCTCACA
TGGTTGTTCCGAAGCCGTGAACTCTGCCCCAAGCTGCACAGGTGGGCGCT
GCGGCTGATGGAGTACAAACATGGAGCTGGAATGGAAGGCGGGGGTAGAG
CACGTAGTGCCCGATGCTTC
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protein sequence of EsuBft968_13a-0001

>EsuBft968_13 ID=EsuBft968_13|Name=EsuBft968_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=243bp
MIALNVRDKPAFDSLFDIAPSAADQPLPPRGPRAPSPSPPNGASVPRVRV
EDANLGTLGSLKKHQLVNVLAAFIEDGLFPIDPKRVPACINGELELPLIN
EFCTPFAAKQRRVSPEERRMIRAEIQQLVDRGVIRQSMSPWAAQCLCVKK
KDGTLRLCIDWRELNKLLVSDSGGLGDMQTIFDGLKGKKYFTQLDLASGF
HQMEIAEKYRSKTAFRDADGMLWEFTRAGFGLTVLPAAFTRRV
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mRNA from alignment at Scaffold_618:620976..622895-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft968_13a-0001 ID=EsuBft968_13a-0001|Name=EsuBft968_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1920bp|location=Sequence derived from alignment at Scaffold_618:620976..622895- (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACTG
TAGTAAGGAGAAGGCGGCAGTCGAGGGCAGCCGGGTGATAGCTCGCATGA
TTGCACTCAATGTTCGCGACAAGCCGGCTTTCGATTCGCTGTTTGACATC
GCCCCCTCCGCTGCCGACCAACCCCTGCCTCCCCGTGGACCGCGCGCCCC
GAGCCCGTCCCCACCTAATGGGGCATCCGTGCCGCGTGTTCGCGTAGAGG
ACGCCAACCTGGGGACGCTGGGGTCGCTCAAGAAGCATCAACTCGTCAAC
GTTCTCGCAGCGTTCATCGAGGACGGCCTGTTTCCGATCGACCCCAAGCG
AGTGCCGGCCTGCATCAACGGTGAGCTTGAGCTTCCTCTGATCAACGAGT
TTTGCACACCTTTTGCAGCCAAGCAAAGGCGAGTCTCTCCGGAAGAACGA
CGCATGATCAGGGCAGAGATTCAGCAGTTGGTAGACCGAGGAGTGATCCG
TCAATCCATGTCTCCTTGGGCTGCCCAGTGCTTGTGCGTCAAGAAGAAGG
ATGGTACGCTGCGACTGTGCATCGACTGGCGTGAACTCAACAAACTCTTG
GTCTCCGATAGTGGGGGTTTGGGTGACATGCAGACGATATTCGATGGGTT
GAAGGGGAAGAAGTATTTCACTCAGCTAGACCTCGCCTCCGGTTTTCACC
AGATGGAAATCGCCGAGAAATACCGTTCCAAGACGGCCTTTCGAGATGCG
GATGGAATGCTTTGGGAATTCACGCGCGCGGGTTTTGGCCTGACGGTGCT
TCCGGCGGCCTTCACTCGTAGAGTATAGTCGGCTCTGGGGCATCTAGCGG
GCGTGTTTAGCTGGCTTGACGACATTCGCATCGCTAGCGACACATGGGAA
GAACATCTCGCCACTCTGACGCTCGTTCTGAACCGCCTTCTGGCTGCGGG
GCTGTCCGTAAACTTCGCAAAGTGCATTTTCGGCGCAGCATCGCAGGAAT
TCCTCGGCATGATCATCGACAGCACGGGCCTGTACCCTGCTCCGTCTAAG
CTAGATGCAATCGCACGCATGCCTCGCTCACACACCGTAGAAGAGCTGCG
CACGTTTTTGGGTCTTACCGGCTACTTGCGTCAGTTTGTACCCAACTACA
GTTTGACTGCCGCTCCGCTCACCAACATCCCGCGCAACAAAGCCTTCGCT
TCGAAACGTGCACGCAAGCTTCCTATCCCGTGGTCCGTAGCTGAGGAAGA
CGCCTTCCAGTCTTTGCGAGAAACGTTGGCTTCCCCGAAGGTCCTCGCTT
TCCCTGACCTTGAGCGTCCGTTCGAACTGCACACGGATGCTAGCACGCTG
GGTGTAGGAGCTTCGCTCATGCAGACAATCGATGGTTTCACCAGAGCGGG
GCGTTCGCGAGCCACCGGTTTTCACAAACCGATGCTAGACGCGGGCTCAC
GGAAATAGAATGCATGGGGGTCCTCTGGGCTATAGACCACTTCCGGCCGT
ACCTAGCGGGTAGACGGTTCAAATTGGTGACAGACTGTTCTGCCCTCACA
TGGTTGTTCCGAAGCCGTGAACTCTGCCCCAAGCTGCACAGGTGGGCGCT
GCGGCTGATGGAGTACAAACATGGAGCTGGAATGGAAGGCGGGGGTAGAG
CACGTAGTGCCCGATGCTTC
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Coding sequence (CDS) from alignment at Scaffold_618:620976..622895-

>EsuBft968_13a-0001 ID=EsuBft968_13a-0001|Name=EsuBft968_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=732bp|location=Sequence derived from alignment at Scaffold_618:620976..622895- (Ectocarpus subulatus male Bft15b)
ATGATTGCACTCAATGTTCGCGACAAGCCGGCTTTCGATTCGCTGTTTGA
CATCGCCCCCTCCGCTGCCGACCAACCCCTGCCTCCCCGTGGACCGCGCG
CCCCGAGCCCGTCCCCACCTAATGGGGCATCCGTGCCGCGTGTTCGCGTA
GAGGACGCCAACCTGGGGACGCTGGGGTCGCTCAAGAAGCATCAACTCGT
CAACGTTCTCGCAGCGTTCATCGAGGACGGCCTGTTTCCGATCGACCCCA
AGCGAGTGCCGGCCTGCATCAACGGTGAGCTTGAGCTTCCTCTGATCAAC
GAGTTTTGCACACCTTTTGCAGCCAAGCAAAGGCGAGTCTCTCCGGAAGA
ACGACGCATGATCAGGGCAGAGATTCAGCAGTTGGTAGACCGAGGAGTGA
TCCGTCAATCCATGTCTCCTTGGGCTGCCCAGTGCTTGTGCGTCAAGAAG
AAGGATGGTACGCTGCGACTGTGCATCGACTGGCGTGAACTCAACAAACT
CTTGGTCTCCGATAGTGGGGGTTTGGGTGACATGCAGACGATATTCGATG
GGTTGAAGGGGAAGAAGTATTTCACTCAGCTAGACCTCGCCTCCGGTTTT
CACCAGATGGAAATCGCCGAGAAATACCGTTCCAAGACGGCCTTTCGAGA
TGCGGATGGAATGCTTTGGGAATTCACGCGCGCGGGTTTTGGCCTGACGG
TGCTTCCGGCGGCCTTCACTCGTAGAGTATAG
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