Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 946362.XP_004988920.1 |
| ProteomeId | EsuBft967_3 |
| Protein domains | PF13358 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 946362.XP_004988920.1|- |
| Length | 192 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.3e-06 |
| EggNOG OGs | 2D5ST@1|root,2SZIE@2759|Eukaryota,38F03@33154|Opisthokonta |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1925bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCGGCAGGAATACATTGTACTGTTGTA
CAGCAGTTCTTTACAGCAGTACTTTACAGTACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCGGTGCAATGTCCAAGTTGCGCACACTTTCAAGATCGGC
CACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTT
GTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGATGATG
GGCGACGCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTTCATC
AATGACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGGCAGA
ATGGATGCACAGGACTTGCAACATGGAGCAGCTGTCTAACCGTTCGGCAG
GAGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGATCAAA
ACGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTCTTGT
TGAGATGGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTGATCG
TGTACATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTATTCT
TACTTTCCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTCGCAC
AACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAGTGGG
GGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTGGTTC
AAGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAGCAGA
GTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCAATGA
CCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGCGTAC
AACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTGACAA
CGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAAACCA
ACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAAGTCG
ATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACAACTT
CGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGGGAGG
GCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACATCCAC
CTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGAGGAA
AAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTTCAAC
CGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAACTTT
GAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAGGTTG
GTACGGGGACAAGGAATGGCCAGGCCAGGAGAAGGGGTGGAAGGCAGCCA
ATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAAGTGGGTC
AAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAAAGCC
GGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAGGAAG
GGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGGCAGC
GACGAGGTTGAACCATGATGAGATTTTTTTCAGCCTTGTGATCAATTGCT
ACACCCATGCACTGGGTGTACCATGTTCCAACAGCACACATATGTGATTG
CTGTGCGCGGGGGGTTGCGTCCCTGCTTCCAGCTGCTGCAGTTGTTGAAA
AACAAAAATCAATAGTATTTAATTG back to topprotein sequence of EsuBft967_3a-0001 >EsuBft967_3 ID=EsuBft967_3|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=523bp
MCDVSRCNVQVAHTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKD
DGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQLSNRS
AGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAV
IVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK
WGPLAKLCDGLPIEEGWFKETGSGKKEMEDEETAEFLWQAKLAKGDYHAA
MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPE
TNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNR
EGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSF
QPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEKGWKA
ANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVE
EGVGEQIQQESAEWGDGSDEVEP back to topmRNA from alignment at Scaffold_228:365282..367274- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1993bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCGGCAGGAATACATTGTACTGTTGTA
CAGCAGTTCTTTACAGCAGTACTTTACAGTACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCGGTGCAATGTCCAAGTGAACTGACCTTATTCATAAACG
ATGTTGCAATTTTTTCTCTTCTCTGGACCTCTCTATGCTGGCAGGTTGCG
CACACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAACAACCACTG
GTGGGATCACCGCCAGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGA
CGGCAAAGAAGGATGATGGGCGACGCCGCCTCACCGAAGTACAAGAAGAT
CAACTTCGCGAGTTCATCAATGACGAGCACAAGGCCGGTCGTCAAGTCTT
TCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACATGGAGCAGC
TGTCTAACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGCTACAAGCGT
CGTAGAGGCAGGATCAAAACGCCACCGTTAAACGCCGAAAGACTTGCTCG
CATTCGTCGGTTTCTTGTTGAGATGGTCATGGCAAAGAGGGCAGAGGATG
CTGGGTTAGCAGTGATCGTGTACATGGATGAGAGTTTTGTCCACCAGGCT
CATGGTTCCCCCTATTCTTACTTTCCTTCGGACGAGGATGGAGTTGTGCA
GGATGGGATTGGTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGC
ATGCAATCACGAAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCG
ATCGAAGAGGGCTGGTTCAAGGAAACGGGTAGCGGCAAGAAGGAAATGGA
AGATGAGGAGACAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCG
ATTACCACGCAGCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACAC
CGCCTTAGCCCTGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGAT
GATTCTTGTTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAG
TCAAAGTGCCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGT
ATGTTTGGGGCCAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGG
CGTTGTTGAGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCC
CTGCAGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCC
ACTCGGGAGTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGT
GGTGACGTTCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCT
ACATGCCGTCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAG
TACGTCAGCCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGT
GCAGATTCGTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGA
AGGGGTGGAAGGCAGCCAATTGTTCGAAGCTGGTTGACCACGCCATTGGA
GAGATGAATAAGTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGAT
AGGCAGCCTCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCG
TGGGTGATGTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCA
GAATGGGGTGATGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTTCA
GCCTTGTGATCAATTGCTACACCCATGCACTGGGTGTACCATGTTCCAAC
AGCACACATATGTGATTGCTGTGCGCGGGGGGTTGCGTCCCTGCTTCCAG
CTGCTGCAGTTGTTGAAAAACAAAAATCAATAGTATTTAATTG back to topCoding sequence (CDS) from alignment at Scaffold_228:365282..367274- >EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1572bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)
ATGTGCGATGTCTCTCGGTGCAATGTCCAAGTTGCGCACACTTTCAAGAT
CGGCCACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCC
AGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGAT
GATGGGCGACGCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTT
CATCAATGACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGG
CAGAATGGATGCACAGGACTTGCAACATGGAGCAGCTGTCTAACCGTTCG
GCAGGAGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGAT
CAAAACGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTC
TTGTTGAGATGGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTG
ATCGTGTACATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTA
TTCTTACTTTCCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTC
GCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAG
TGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTG
GTTCAAGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAG
CAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCA
ATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGC
GTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTG
ACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAA
ACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAA
GTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACA
ACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGG
GAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACAT
CCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGA
GGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTT
CAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAA
CTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAG
GTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGAAGGGGTGGAAGGCA
GCCAATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAAGTG
GGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAA
AGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAG
GAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGG
CAGCGACGAGGTTGAACCATGA back to top
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