EsuBft967_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft967_3a-0001
Unique NameEsuBft967_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:365282..367274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog946362.XP_004988920.1
ProteomeIdEsuBft967_3
Protein domainsPF13358
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl946362.XP_004988920.1|-
Length192
Hectar predicted targeting categoryother localisation
Evalue1.3e-06
EggNOG OGs2D5ST@1|root,2SZIE@2759|Eukaryota,38F03@33154|Opisthokonta
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3aEsuBft967_3aEctocarpus subulatus male Bft15bgeneScaffold_228 365282..367274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3a-0001-exonEsuBft967_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 365282..366980 -
EsuBft967_3a-0001-exonagat-exon-27616Ectocarpus subulatus male Bft15bexonScaffold_228 367049..367274 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3a-0001-exonagat-three_prime_utr-23584Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 365282..365438 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3a-0001-cdsEsuBft967_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 365439..366980 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3a-0001-exonagat-five_prime_utr-15343Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_228 367079..367274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft967_3a-0001EsuBft967_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 365439..367078 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1925bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCGGCAGGAATACATTGTACTGTTGTA
CAGCAGTTCTTTACAGCAGTACTTTACAGTACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCGGTGCAATGTCCAAGTTGCGCACACTTTCAAGATCGGC
CACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCCAGTT
GTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGATGATG
GGCGACGCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTTCATC
AATGACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGGCAGA
ATGGATGCACAGGACTTGCAACATGGAGCAGCTGTCTAACCGTTCGGCAG
GAGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGATCAAA
ACGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTCTTGT
TGAGATGGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTGATCG
TGTACATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTATTCT
TACTTTCCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTCGCAC
AACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAGTGGG
GGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTGGTTC
AAGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAGCAGA
GTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCAATGA
CCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGCGTAC
AACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTGACAA
CGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAAACCA
ACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAAGTCG
ATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACAACTT
CGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGGGAGG
GCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACATCCAC
CTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGAGGAA
AAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTTCAAC
CGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAACTTT
GAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAGGTTG
GTACGGGGACAAGGAATGGCCAGGCCAGGAGAAGGGGTGGAAGGCAGCCA
ATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAAGTGGGTC
AAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAAAGCC
GGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAGGAAG
GGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGGCAGC
GACGAGGTTGAACCATGATGAGATTTTTTTCAGCCTTGTGATCAATTGCT
ACACCCATGCACTGGGTGTACCATGTTCCAACAGCACACATATGTGATTG
CTGTGCGCGGGGGGTTGCGTCCCTGCTTCCAGCTGCTGCAGTTGTTGAAA
AACAAAAATCAATAGTATTTAATTG
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protein sequence of EsuBft967_3a-0001

>EsuBft967_3 ID=EsuBft967_3|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=523bp
MCDVSRCNVQVAHTFKIGHDKVRRINNHWWDHRQLYETTAVGRGKTAKKD
DGRRRLTEVQEDQLREFINDEHKAGRQVFRRTVAEWMHRTCNMEQLSNRS
AGGLLSRLGYKRRRGRIKTPPLNAERLARIRRFLVEMVMAKRAEDAGLAV
IVYMDESFVHQAHGSPYSYFPSDEDGVVQDGIGRTTGKGLRMIMVHAITK
WGPLAKLCDGLPIEEGWFKETGSGKKEMEDEETAEFLWQAKLAKGDYHAA
MTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPE
TNTKKHNVDLLRMFGAKSIRVRRKEGEQGVVEYNFEVPTEPGSSFPAGNR
EGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSF
QPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEKGWKA
ANCSKLVDHAIGEMNKWVKDRDGVLSGTIGSLEKPDGYDTDDVSPVGDVE
EGVGEQIQQESAEWGDGSDEVEP
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mRNA from alignment at Scaffold_228:365282..367274-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1993bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)
TATTTTTGCTGCCAACAGCAGTATGTTCATGTGTGGTGTGTGTGTTTTCG
TTGCATTTATGTCGGGCGCGAGCCTTTGCCGTTCGTTACACGGTTGACTC
ACCTGTCTACGTCACACAAATATTCGGCAGGAATACATTGTACTGTTGTA
CAGCAGTTCTTTACAGCAGTACTTTACAGTACCTGAGCAGGCTTGCATGT
GCGATGTCTCTCGGTGCAATGTCCAAGTGAACTGACCTTATTCATAAACG
ATGTTGCAATTTTTTCTCTTCTCTGGACCTCTCTATGCTGGCAGGTTGCG
CACACTTTCAAGATCGGCCACGACAAGGTCAGACGCATCAACAACCACTG
GTGGGATCACCGCCAGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGA
CGGCAAAGAAGGATGATGGGCGACGCCGCCTCACCGAAGTACAAGAAGAT
CAACTTCGCGAGTTCATCAATGACGAGCACAAGGCCGGTCGTCAAGTCTT
TCGCCGCACGGTGGCAGAATGGATGCACAGGACTTGCAACATGGAGCAGC
TGTCTAACCGTTCGGCAGGAGGGCTGCTGAGTAGGCTCGGCTACAAGCGT
CGTAGAGGCAGGATCAAAACGCCACCGTTAAACGCCGAAAGACTTGCTCG
CATTCGTCGGTTTCTTGTTGAGATGGTCATGGCAAAGAGGGCAGAGGATG
CTGGGTTAGCAGTGATCGTGTACATGGATGAGAGTTTTGTCCACCAGGCT
CATGGTTCCCCCTATTCTTACTTTCCTTCGGACGAGGATGGAGTTGTGCA
GGATGGGATTGGTCGCACAACGGGGAAGGGCTTGCGCATGATCATGGTGC
ATGCAATCACGAAGTGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCG
ATCGAAGAGGGCTGGTTCAAGGAAACGGGTAGCGGCAAGAAGGAAATGGA
AGATGAGGAGACAGCAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCG
ATTACCACGCAGCAATGACCGACTCGATGTTCATGGAGTGGCTTGAACAC
CGCCTTAGCCCTGCGTACAACGCGATCCCGGAGTTCAAAGGCAAACGGAT
GATTCTTGTTCTTGACAACGCCTCATACCACCATGGATTTGACGCGGAAG
TCAAAGTGCCGGAAACCAACACCAAGAAGCACAACGTCGATCTGTTGCGT
ATGTTTGGGGCCAAGTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGG
CGTTGTTGAGTACAACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCC
CTGCAGGGAACAGGGAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCC
ACTCGGGAGTACATCCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGT
GGTGACGTTCATGAGGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCT
ACATGCCGTCCTTTCAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAG
TACGTCAGCCTTAACTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGT
GCAGATTCGTAAAGGTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGA
AGGGGTGGAAGGCAGCCAATTGTTCGAAGCTGGTTGACCACGCCATTGGA
GAGATGAATAAGTGGGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGAT
AGGCAGCCTCGAAAAGCCGGACGGGTACGATACAGATGATGTGTCGCCCG
TGGGTGATGTCGAGGAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCA
GAATGGGGTGATGGCAGCGACGAGGTTGAACCATGATGAGATTTTTTTCA
GCCTTGTGATCAATTGCTACACCCATGCACTGGGTGTACCATGTTCCAAC
AGCACACATATGTGATTGCTGTGCGCGGGGGGTTGCGTCCCTGCTTCCAG
CTGCTGCAGTTGTTGAAAAACAAAAATCAATAGTATTTAATTG
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Coding sequence (CDS) from alignment at Scaffold_228:365282..367274-

>EsuBft967_3a-0001 ID=EsuBft967_3a-0001|Name=EsuBft967_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1572bp|location=Sequence derived from alignment at Scaffold_228:365282..367274- (Ectocarpus subulatus male Bft15b)
ATGTGCGATGTCTCTCGGTGCAATGTCCAAGTTGCGCACACTTTCAAGAT
CGGCCACGACAAGGTCAGACGCATCAACAACCACTGGTGGGATCACCGCC
AGTTGTACGAGACCACCGCCGTGGGGAGAGGCAAGACGGCAAAGAAGGAT
GATGGGCGACGCCGCCTCACCGAAGTACAAGAAGATCAACTTCGCGAGTT
CATCAATGACGAGCACAAGGCCGGTCGTCAAGTCTTTCGCCGCACGGTGG
CAGAATGGATGCACAGGACTTGCAACATGGAGCAGCTGTCTAACCGTTCG
GCAGGAGGGCTGCTGAGTAGGCTCGGCTACAAGCGTCGTAGAGGCAGGAT
CAAAACGCCACCGTTAAACGCCGAAAGACTTGCTCGCATTCGTCGGTTTC
TTGTTGAGATGGTCATGGCAAAGAGGGCAGAGGATGCTGGGTTAGCAGTG
ATCGTGTACATGGATGAGAGTTTTGTCCACCAGGCTCATGGTTCCCCCTA
TTCTTACTTTCCTTCGGACGAGGATGGAGTTGTGCAGGATGGGATTGGTC
GCACAACGGGGAAGGGCTTGCGCATGATCATGGTGCATGCAATCACGAAG
TGGGGGCCGTTGGCTAAGCTTTGTGATGGGTTACCGATCGAAGAGGGCTG
GTTCAAGGAAACGGGTAGCGGCAAGAAGGAAATGGAAGATGAGGAGACAG
CAGAGTTTCTGTGGCAGGCTAAGTTGGCAAAGGGCGATTACCACGCAGCA
ATGACCGACTCGATGTTCATGGAGTGGCTTGAACACCGCCTTAGCCCTGC
GTACAACGCGATCCCGGAGTTCAAAGGCAAACGGATGATTCTTGTTCTTG
ACAACGCCTCATACCACCATGGATTTGACGCGGAAGTCAAAGTGCCGGAA
ACCAACACCAAGAAGCACAACGTCGATCTGTTGCGTATGTTTGGGGCCAA
GTCGATCAGGGTTAGGCGTAAGGAGGGCGAACAGGGCGTTGTTGAGTACA
ACTTCGAGGTACCGACAGAGCCTGGTTCTTCATTCCCTGCAGGGAACAGG
GAGGGCGGTGTAAGCAGAGCGGAGGTAGCAACGGCCACTCGGGAGTACAT
CCACCTCAATCACCCTGAAAGGCTCGAGGAACGGGTGGTGACGTTCATGA
GGAAAAAGGGGTGGGCGTTGATTTGGACGCCGCCCTACATGCCGTCCTTT
CAACCGATCGAGCTTTTTTGGCAGCATGGTAAGCAGTACGTCAGCCTTAA
CTTTGAGTTGAAGCGAAAGATGCGGGAGGTGTGGGTGCAGATTCGTAAAG
GTTGGTACGGGGACAAGGAATGGCCAGGCCAGGAGAAGGGGTGGAAGGCA
GCCAATTGTTCGAAGCTGGTTGACCACGCCATTGGAGAGATGAATAAGTG
GGTCAAGGACCGTGATGGAGTGCTTTCTGGTACGATAGGCAGCCTCGAAA
AGCCGGACGGGTACGATACAGATGATGTGTCGCCCGTGGGTGATGTCGAG
GAAGGGGTAGGGGAGCAGATCCAGCAGGAAAGCGCAGAATGGGGTGATGG
CAGCGACGAGGTTGAACCATGA
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