EsuBft966_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft966_7a-0001
Unique NameEsuBft966_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:114915..115558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FXD3
ProteomeIdEsuBft966_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length64
Hectar predicted targeting categoryother localisation
Evalue1.02e-39
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred namePOGK
KEGG koko:K09228
DescriptionDNA binding
COG categoryCH
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft966_7aEsuBft966_7aEctocarpus subulatus male Bft15bgeneScaffold_457 114915..115558 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_7a-0001-exonEsuBft966_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 114915..115558 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_7a-0001-exonagat-five_prime_utr-15340Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_457 114915..115087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_7a-0001-cdsEsuBft966_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 115088..115558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_7a-0001EsuBft966_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 115088..115558 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=644bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAAGCAGGAGGAGCAGCTCAGTCAGAGAGAAGGCCAGCGCCAACCCCAA
GCTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCGA
CGCCGAACAAGCCCTTGTGGACTACATCAACGAGCAGCGCAATCAGCACC
GCGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCCAGCTGAAGCCT
GACACCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGC
TTTCAAGGTCAAATTCAACTCCTGGTACCAATGGTTCCGCAAGCGGAATG
GGTTCAGCATCCGCCGGCGTACCAGCGTTGGCCAGAAACTGCCGAAGGGT
TACGAGGGTGTGGCGGGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGT
AAAGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCAGACG
AGAGCCCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTG
GAGGCGAAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTCCA
GCACGAGATGCCAGTGGAGAACACTCTGGAGAAGGCCGGTGCGAAGGATG
CTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTAA
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protein sequence of EsuBft966_7a-0001

>EsuBft966_7 ID=EsuBft966_7|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MNKLLQLKPDTLGGMPANAKPEEALAFKVKFNSWYQWFRKRNGFSIRRRT
SVGQKLPKGYEGVAGATVMKLREALVKRAGEIYARRHPPAPDESPIKGED
LTSEQLASVEAKVFEELGNMDQTPVQHEMPVENTLEKAGAKDARISTGGE
GELIFL
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mRNA from alignment at Scaffold_457:114915..115558+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=644bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)
TGAAGCAGGAGGAGCAGCTCAGTCAGAGAGAAGGCCAGCGCCAACCCCAA
GCTTCGAAGGCCAAGCAGGTTCACAGCGGAGGGAAAGCTTCGACAGTCGA
CGCCGAACAAGCCCTTGTGGACTACATCAACGAGCAGCGCAATCAGCACC
GCGGTTGTGGTAATCGGGAGGTGATGAACAAGCTGCTCCAGCTGAAGCCT
GACACCCTTGGCGGGATGCCGGCGAACGCGAAACCGGAGGAGGCGCTGGC
TTTCAAGGTCAAATTCAACTCCTGGTACCAATGGTTCCGCAAGCGGAATG
GGTTCAGCATCCGCCGGCGTACCAGCGTTGGCCAGAAACTGCCGAAGGGT
TACGAGGGTGTGGCGGGGGCGACGGTGATGAAGCTGCGCGAGGCTCTCGT
AAAGCGCGCCGGTGAGATCTACGCTCGGCGCCACCCGCCGGCACCAGACG
AGAGCCCCATCAAAGGGGAGGATCTGACTTCCGAGCAGCTGGCGTCTGTG
GAGGCGAAGGTTTTCGAGGAACTCGGCAACATGGACCAGACGCCAGTCCA
GCACGAGATGCCAGTGGAGAACACTCTGGAGAAGGCCGGTGCGAAGGATG
CTCGCATCAGCACAGGAGGTGAGGGCGAGCTAATATTTTTGTAA
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Coding sequence (CDS) from alignment at Scaffold_457:114915..115558+

>EsuBft966_7a-0001 ID=EsuBft966_7a-0001|Name=EsuBft966_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_457:114915..115558+ (Ectocarpus subulatus male Bft15b)
ATGAACAAGCTGCTCCAGCTGAAGCCTGACACCCTTGGCGGGATGCCGGC
GAACGCGAAACCGGAGGAGGCGCTGGCTTTCAAGGTCAAATTCAACTCCT
GGTACCAATGGTTCCGCAAGCGGAATGGGTTCAGCATCCGCCGGCGTACC
AGCGTTGGCCAGAAACTGCCGAAGGGTTACGAGGGTGTGGCGGGGGCGAC
GGTGATGAAGCTGCGCGAGGCTCTCGTAAAGCGCGCCGGTGAGATCTACG
CTCGGCGCCACCCGCCGGCACCAGACGAGAGCCCCATCAAAGGGGAGGAT
CTGACTTCCGAGCAGCTGGCGTCTGTGGAGGCGAAGGTTTTCGAGGAACT
CGGCAACATGGACCAGACGCCAGTCCAGCACGAGATGCCAGTGGAGAACA
CTCTGGAGAAGGCCGGTGCGAAGGATGCTCGCATCAGCACAGGAGGTGAG
GGCGAGCTAATATTTTTGTAA
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