EsuBft966_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft966_3a-0001
Unique NameEsuBft966_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_457contigScaffold_457:69025..72373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft966_3
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001070.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft966_3aEsuBft966_3aEctocarpus subulatus male Bft15bgeneScaffold_457 69025..72373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_3a-0001EsuBft966_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_457 69025..72373 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_3a-0001-exonagat-exon-14467Ectocarpus subulatus male Bft15bexonScaffold_457 69025..69434 -
EsuBft966_3a-0001-exonEsuBft966_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_457 69861..69864 -
EsuBft966_3a-0001-exonagat-exon-14466Ectocarpus subulatus male Bft15bexonScaffold_457 70399..70531 -
EsuBft966_3a-0001-exonagat-exon-14468Ectocarpus subulatus male Bft15bexonScaffold_457 71357..71815 -
EsuBft966_3a-0001-exonagat-exon-14465Ectocarpus subulatus male Bft15bexonScaffold_457 72162..72373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft966_3a-0001-cdsEsuBft966_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_457 69025..69434 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1218bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTA
CAGACCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTC
CGGCAGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGG
CGGCGGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGT
TAGTGGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAA
GGAGTCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGA
GCAGGCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAA
CCGGAGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCC
GGACCGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCA
GGAAGTCCTACGGCGCAAAAGAGCCATCGAGGACGAGCGAAACAAACAGG
TCAGGGAGCGTTCTGCAGTTCTGCAACACGAAGCCCGACGGGACAAGCGG
CTGGAGAAGAAGAGGGCCGAAAAGCTGATCACATACGTTTACTGCGCCGT
TGGGGGCGCGCACTTTGGCCGTTGGAACTTTGGATGTACTCGACAATGTT
TGGTCATTTCTCAAACGGATAAGATGTTCGGAGCTGTGTTCCTTCTACAC
CTTCCGCCTCCTGGTCATGGACACGTCCATGTCGCGAATCTGTTCCAGCG
AGTATGGCGATTCAATCGAATACGACGCACCATAGCCAAGGTTCGAGAGT
CCACTCCAGCAGTGCGAACGATCGTGTTCAGCATGCGGCGAAAGGCGGCC
GTAGCGAGGAAGACCGTGGCCAGGCGCCACAAGACACAAGCCGCCGATCT
CATCCGCTGCGCCTTGAGGGTGGGTGCAGCTCCCGCCCGTCCTGCCTTGT
CGACTACCATGTCGTCTGCGTACTACCTTCGATATTTCTCCTGCTTAAGC
TGTCTCCCGCTAGCATAG
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protein sequence of EsuBft966_3a-0001

>EsuBft966_3 ID=EsuBft966_3|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=405bp
MTFKSMPTRARTMSTSKSEVDIFEAKKKGVRLPRVKVAALHRDKADSVAP
RRRGRHRDMRLPPHGGHQNTATSGVTKEIEAQITDLRACPHARRALEARV
RQYFSKRSKRYNRCDGGGGRKPSGDGSSIGSNELVGSAGISTATTEPAGQ
GVPHDDGSNSCWQQHKEQATYTKAHRLGTRGFGTGGGGGAAGQSVSGRAA
GPVSASDRLAAQTLRAQEVLRRKRAIEDERNKQVRERSAVLQHEARRDKR
LEKKRAEKLITYVYCAVGGAHFGRWNFGCTRQCLVISQTDKMFGAVFLLH
LPPPGHGHVHVANLFQRVWRFNRIRRTIAKVRESTPAVRTIVFSMRRKAA
VARKTVARRHKTQAADLIRCALRVGAAPARPALSTTMSSAYYLRYFSCLS
CLPLA
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mRNA from alignment at Scaffold_457:69025..72373-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3349bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGTGAGTGACTGGACCAAACGATTTATTTTGCGTTTTTT
TCTTTTAATGGGTACATCGAGACTGTTCCGCGAGTTTTGCCCGACAGATC
TCGTGCGCTCTAAGCGCTAGCACTACACGGGATACCACAAGGTATGCCGT
CTCCCGCCCAACCAAGCGTTCCAGACGGGCGTGGGCGTTGACAAGGATTC
GCGAAATGCCTAGGGGATATTTCACGTAAGCGCCCCGCGAACTACAACTC
TAAAGGTACAAACTCTGCTATGCACGAGCACTGCCTGGGTCTCCCTGCTC
TGTTTTAACGTGTTTGTTTCGGCCTCTCCATCCGCACGTGACCGTACCTG
GGCTGCAGGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTACAGA
CCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTCCGGC
AGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGGCGGC
GGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGTTAGT
GGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAAGGAG
TCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGAGCAG
GCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAACCGG
AGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCCGGAC
CGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCAGGAA
GTCCTACGGCGCAAAAGGTATAAAGTACGAGCGCGAGGAGTACACTCGCG
ACTTTTGTGTTGTTCTGTGTACTCTGCTCTGAACATTCTGTGTAACGGTA
GAACAGTTGGCTCACGACACCTTGTTGCAATAAGTCGTTCTCGCGTGTAA
TTTCAATGGTTTGGGCGAATGAGAGTCGCACGCAAGGACGCTAAGCACCT
CGACGGCAGTCTGGCACGATAGAACGGAGCCGTCTTGGGATGAGTCCGGC
TCACGCGCACGAAGGAGAGACAAACTTACTGTTGAAGAAATTCTACATCC
TCTAGGCCACCCCCGTAGTGTTGGGGAAGAACGTTGGCAAGTCTCGACCC
CCTTAGTCGCAGTACTGTCAGACAGCGCGTGTTAGGTTCGCGACTTGGCC
TTTTCAGTAGTTCGCAAGGGACGAAGGACTGTCGACTCTTCCTCAGGGGG
TTGTCAAAGGCGTGCACCATGGTGGGGATCATGTTGCCCTCCCCCCTCCC
CTGGAAGTTGGCCGCTCCGTAGAAGACTCAGTAGGAGTGGTTATTCATGA
AAATATTGTGGTACCTAAGAGGGCCGAGAGTCGAGAGGCTCGGCCTGGAG
TTCAGGCACAAATACGAGTTATAGGTGCGGGATCCAAAGGAGTGAGTCTG
ACTGGATGAAGAACCAGTGAACACTGGCTGAACGCAAGCGTACGGACATT
ACCAAGGTCAACGTCAACCCCACCCCTTCCCCTAACAACAATACCCCCAA
CGACAACGACAACGAAAGCAGAAAAAAGCCAAGTGAAACGGAAAGCAACA
ACCACGTGTTCTTTTACTTGCTGTATCCAACCTACGAGTCAGAGCCATCG
AGGACGAGCGAAACAAACAGGTCAGGGAGCGTTCTGCAGTTCTGCAACAC
GAAGCCCGACGGGACAAGCGGCTGGAGAAGAAGAGGGCCGAAAAGCTGAT
CACATACGTTTACTGCGCCGTTGGGGTGAGCGGTCGTTATGTTGTCGGAA
GGTAGAGCCTGTGACGTTGGGGTAAGGAATTGATGGCAGAACAGGCTACT
AAATCCTCTCGAAATATGGTGCAGTCCCCCTATAGTTTATGTTGTTCTGG
AATCGCCCCATACAATTTGCGAGATCTCGCGTATACTTGTCATTGGGCGT
GAGTGCCCTGGGAAATATCCTAAGGCGAAGAAACACTGTCCCCGAGACGG
GCGTATATTGGTTGAGTGAAGGGTGACGTCAGAGCCGTTGGGTCGTCGGA
GACGTCGCCGTAAAGCTTGTTGGCAACAAAGCATCACTTGAGACAGAACA
TGAAACGGTGCTCTAGACCAATTGTTATATGGGCTGCCGTCACCTGACCT
TGTGCGACAGTTCGCGGATTGGAAGGTTCGGTTTGACGAGAAGAGAACGG
CGAAGCACCAGGCAGAGCGGAAAGATCACTGCGCACGCATTGTACAGGTA
TCCCTACCCCTGTCATCCCGAATCGCACCCAAATTCTCAGCTACGAAATT
CTAACTCAGGGCGGTATATAGAACAAGGCGGGCTTGGGGCCGCACACATG
TGTCGGCGTACCTCCAGTTAGAGTTGGGTATTGGTCGGCTGTTGTTGGCG
GAAAATGGTTCAAGGTAGAACAACAGCCTTGATTACAACAGAAAATCGTT
TGTACTTTTCTGGTGCTAAAGCGTGCCGCCAGCTTGGAAAAAACAACAGC
CACCTTTCCGTCCCTGAAGCACCTTCCTTTCCATTGTTCTGCGTGCATGC
TCAGCTTCGTGTTGATCGTGGTAAACGATTCTTGCGGTTGGTTATTTGAG
TTTCGGACAAGGAAACAGGCCACTATCTGAGTCATGCCGTACTTATCGGT
CACTTGAGAACGCATGGGGGCTAGCGTAAGTTCGTTTTGGCTGTCGATGA
CGGCGACAGTGGTTTCTGAATTGCGCAATACTGCTGCAGCGCACTTTGGC
CGTTGGAACTTTGGATGTACTCGACAATGTTTGGTCATTTCTCAAACGGA
TAAGATGTTCGGAGCTGTGTTCCTTCTACACCTTCCGCCTCCTGGTCATG
GACACGTCCATGTCGCGAATCTGTTCCAGCGAGTATGGCGATTCAATCGA
ATACGACGCACCATAGCCAAGGTTCGAGAGTCCACTCCAGCAGTGCGAAC
GATCGTGTTCAGCATGCGGCGAAAGGCGGCCGTAGCGAGGAAGACCGTGG
CCAGGCGCCACAAGACACAAGCCGCCGATCTCATCCGCTGCGCCTTGAGG
GTGGGTGCAGCTCCCGCCCGTCCTGCCTTGTCGACTACCATGTCGTCTGC
GTACTACCTTCGATATTTCTCCTGCTTAAGCTGTCTCCCGCTAGCATAG
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Coding sequence (CDS) from alignment at Scaffold_457:69025..72373-

>EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1218bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTA
CAGACCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTC
CGGCAGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGG
CGGCGGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGT
TAGTGGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAA
GGAGTCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGA
GCAGGCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAA
CCGGAGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCC
GGACCGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCA
GGAAGTCCTACGGCGCAAAAGAGCCATCGAGGACGAGCGAAACAAACAGG
TCAGGGAGCGTTCTGCAGTTCTGCAACACGAAGCCCGACGGGACAAGCGG
CTGGAGAAGAAGAGGGCCGAAAAGCTGATCACATACGTTTACTGCGCCGT
TGGGGGCGCGCACTTTGGCCGTTGGAACTTTGGATGTACTCGACAATGTT
TGGTCATTTCTCAAACGGATAAGATGTTCGGAGCTGTGTTCCTTCTACAC
CTTCCGCCTCCTGGTCATGGACACGTCCATGTCGCGAATCTGTTCCAGCG
AGTATGGCGATTCAATCGAATACGACGCACCATAGCCAAGGTTCGAGAGT
CCACTCCAGCAGTGCGAACGATCGTGTTCAGCATGCGGCGAAAGGCGGCC
GTAGCGAGGAAGACCGTGGCCAGGCGCCACAAGACACAAGCCGCCGATCT
CATCCGCTGCGCCTTGAGGGTGGGTGCAGCTCCCGCCCGTCCTGCCTTGT
CGACTACCATGTCGTCTGCGTACTACCTTCGATATTTCTCCTGCTTAAGC
TGTCTCCCGCTAGCATAG
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