Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft966_3 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Length | 121 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_001070.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1218bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTA
CAGACCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTC
CGGCAGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGG
CGGCGGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGT
TAGTGGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAA
GGAGTCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGA
GCAGGCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAA
CCGGAGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCC
GGACCGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCA
GGAAGTCCTACGGCGCAAAAGAGCCATCGAGGACGAGCGAAACAAACAGG
TCAGGGAGCGTTCTGCAGTTCTGCAACACGAAGCCCGACGGGACAAGCGG
CTGGAGAAGAAGAGGGCCGAAAAGCTGATCACATACGTTTACTGCGCCGT
TGGGGGCGCGCACTTTGGCCGTTGGAACTTTGGATGTACTCGACAATGTT
TGGTCATTTCTCAAACGGATAAGATGTTCGGAGCTGTGTTCCTTCTACAC
CTTCCGCCTCCTGGTCATGGACACGTCCATGTCGCGAATCTGTTCCAGCG
AGTATGGCGATTCAATCGAATACGACGCACCATAGCCAAGGTTCGAGAGT
CCACTCCAGCAGTGCGAACGATCGTGTTCAGCATGCGGCGAAAGGCGGCC
GTAGCGAGGAAGACCGTGGCCAGGCGCCACAAGACACAAGCCGCCGATCT
CATCCGCTGCGCCTTGAGGGTGGGTGCAGCTCCCGCCCGTCCTGCCTTGT
CGACTACCATGTCGTCTGCGTACTACCTTCGATATTTCTCCTGCTTAAGC
TGTCTCCCGCTAGCATAG back to topprotein sequence of EsuBft966_3a-0001 >EsuBft966_3 ID=EsuBft966_3|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=405bp
MTFKSMPTRARTMSTSKSEVDIFEAKKKGVRLPRVKVAALHRDKADSVAP
RRRGRHRDMRLPPHGGHQNTATSGVTKEIEAQITDLRACPHARRALEARV
RQYFSKRSKRYNRCDGGGGRKPSGDGSSIGSNELVGSAGISTATTEPAGQ
GVPHDDGSNSCWQQHKEQATYTKAHRLGTRGFGTGGGGGAAGQSVSGRAA
GPVSASDRLAAQTLRAQEVLRRKRAIEDERNKQVRERSAVLQHEARRDKR
LEKKRAEKLITYVYCAVGGAHFGRWNFGCTRQCLVISQTDKMFGAVFLLH
LPPPGHGHVHVANLFQRVWRFNRIRRTIAKVRESTPAVRTIVFSMRRKAA
VARKTVARRHKTQAADLIRCALRVGAAPARPALSTTMSSAYYLRYFSCLS
CLPLA back to topmRNA from alignment at Scaffold_457:69025..72373- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3349bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGTGAGTGACTGGACCAAACGATTTATTTTGCGTTTTTT
TCTTTTAATGGGTACATCGAGACTGTTCCGCGAGTTTTGCCCGACAGATC
TCGTGCGCTCTAAGCGCTAGCACTACACGGGATACCACAAGGTATGCCGT
CTCCCGCCCAACCAAGCGTTCCAGACGGGCGTGGGCGTTGACAAGGATTC
GCGAAATGCCTAGGGGATATTTCACGTAAGCGCCCCGCGAACTACAACTC
TAAAGGTACAAACTCTGCTATGCACGAGCACTGCCTGGGTCTCCCTGCTC
TGTTTTAACGTGTTTGTTTCGGCCTCTCCATCCGCACGTGACCGTACCTG
GGCTGCAGGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTACAGA
CCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTCCGGC
AGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGGCGGC
GGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGTTAGT
GGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAAGGAG
TCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGAGCAG
GCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAACCGG
AGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCCGGAC
CGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCAGGAA
GTCCTACGGCGCAAAAGGTATAAAGTACGAGCGCGAGGAGTACACTCGCG
ACTTTTGTGTTGTTCTGTGTACTCTGCTCTGAACATTCTGTGTAACGGTA
GAACAGTTGGCTCACGACACCTTGTTGCAATAAGTCGTTCTCGCGTGTAA
TTTCAATGGTTTGGGCGAATGAGAGTCGCACGCAAGGACGCTAAGCACCT
CGACGGCAGTCTGGCACGATAGAACGGAGCCGTCTTGGGATGAGTCCGGC
TCACGCGCACGAAGGAGAGACAAACTTACTGTTGAAGAAATTCTACATCC
TCTAGGCCACCCCCGTAGTGTTGGGGAAGAACGTTGGCAAGTCTCGACCC
CCTTAGTCGCAGTACTGTCAGACAGCGCGTGTTAGGTTCGCGACTTGGCC
TTTTCAGTAGTTCGCAAGGGACGAAGGACTGTCGACTCTTCCTCAGGGGG
TTGTCAAAGGCGTGCACCATGGTGGGGATCATGTTGCCCTCCCCCCTCCC
CTGGAAGTTGGCCGCTCCGTAGAAGACTCAGTAGGAGTGGTTATTCATGA
AAATATTGTGGTACCTAAGAGGGCCGAGAGTCGAGAGGCTCGGCCTGGAG
TTCAGGCACAAATACGAGTTATAGGTGCGGGATCCAAAGGAGTGAGTCTG
ACTGGATGAAGAACCAGTGAACACTGGCTGAACGCAAGCGTACGGACATT
ACCAAGGTCAACGTCAACCCCACCCCTTCCCCTAACAACAATACCCCCAA
CGACAACGACAACGAAAGCAGAAAAAAGCCAAGTGAAACGGAAAGCAACA
ACCACGTGTTCTTTTACTTGCTGTATCCAACCTACGAGTCAGAGCCATCG
AGGACGAGCGAAACAAACAGGTCAGGGAGCGTTCTGCAGTTCTGCAACAC
GAAGCCCGACGGGACAAGCGGCTGGAGAAGAAGAGGGCCGAAAAGCTGAT
CACATACGTTTACTGCGCCGTTGGGGTGAGCGGTCGTTATGTTGTCGGAA
GGTAGAGCCTGTGACGTTGGGGTAAGGAATTGATGGCAGAACAGGCTACT
AAATCCTCTCGAAATATGGTGCAGTCCCCCTATAGTTTATGTTGTTCTGG
AATCGCCCCATACAATTTGCGAGATCTCGCGTATACTTGTCATTGGGCGT
GAGTGCCCTGGGAAATATCCTAAGGCGAAGAAACACTGTCCCCGAGACGG
GCGTATATTGGTTGAGTGAAGGGTGACGTCAGAGCCGTTGGGTCGTCGGA
GACGTCGCCGTAAAGCTTGTTGGCAACAAAGCATCACTTGAGACAGAACA
TGAAACGGTGCTCTAGACCAATTGTTATATGGGCTGCCGTCACCTGACCT
TGTGCGACAGTTCGCGGATTGGAAGGTTCGGTTTGACGAGAAGAGAACGG
CGAAGCACCAGGCAGAGCGGAAAGATCACTGCGCACGCATTGTACAGGTA
TCCCTACCCCTGTCATCCCGAATCGCACCCAAATTCTCAGCTACGAAATT
CTAACTCAGGGCGGTATATAGAACAAGGCGGGCTTGGGGCCGCACACATG
TGTCGGCGTACCTCCAGTTAGAGTTGGGTATTGGTCGGCTGTTGTTGGCG
GAAAATGGTTCAAGGTAGAACAACAGCCTTGATTACAACAGAAAATCGTT
TGTACTTTTCTGGTGCTAAAGCGTGCCGCCAGCTTGGAAAAAACAACAGC
CACCTTTCCGTCCCTGAAGCACCTTCCTTTCCATTGTTCTGCGTGCATGC
TCAGCTTCGTGTTGATCGTGGTAAACGATTCTTGCGGTTGGTTATTTGAG
TTTCGGACAAGGAAACAGGCCACTATCTGAGTCATGCCGTACTTATCGGT
CACTTGAGAACGCATGGGGGCTAGCGTAAGTTCGTTTTGGCTGTCGATGA
CGGCGACAGTGGTTTCTGAATTGCGCAATACTGCTGCAGCGCACTTTGGC
CGTTGGAACTTTGGATGTACTCGACAATGTTTGGTCATTTCTCAAACGGA
TAAGATGTTCGGAGCTGTGTTCCTTCTACACCTTCCGCCTCCTGGTCATG
GACACGTCCATGTCGCGAATCTGTTCCAGCGAGTATGGCGATTCAATCGA
ATACGACGCACCATAGCCAAGGTTCGAGAGTCCACTCCAGCAGTGCGAAC
GATCGTGTTCAGCATGCGGCGAAAGGCGGCCGTAGCGAGGAAGACCGTGG
CCAGGCGCCACAAGACACAAGCCGCCGATCTCATCCGCTGCGCCTTGAGG
GTGGGTGCAGCTCCCGCCCGTCCTGCCTTGTCGACTACCATGTCGTCTGC
GTACTACCTTCGATATTTCTCCTGCTTAAGCTGTCTCCCGCTAGCATAG back to topCoding sequence (CDS) from alignment at Scaffold_457:69025..72373- >EsuBft966_3a-0001 ID=EsuBft966_3a-0001|Name=EsuBft966_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1218bp|location=Sequence derived from alignment at Scaffold_457:69025..72373- (Ectocarpus subulatus male Bft15b)
ATGACATTCAAATCAATGCCCACCCGAGCCAGAACAATGTCCACGTCGAA
ATCCGAAGTCGACATCTTCGAAGCAAAAAAGAAGGGCGTCCGGTTGCCCA
GAGTGAAAGTTGCGGCCCTGCATCGTGATAAGGCGGACAGCGTTGCACCT
AGACGCCGTGGGAGGCACCGGGACATGCGCTTGCCCCCCCACGGCGGGCA
TCAGAACACAGCGACAAGCGGCGTGACCAAAGAAATAGAGGCTCAGATTA
CAGACCTGCGCGCATGTCCCCACGCAAGGCGCGCTCTGGAGGCCAGGGTC
CGGCAGTACTTCTCGAAGCGGTCGAAGCGATATAACCGATGTGACGGCGG
CGGCGGTCGAAAACCTTCGGGAGACGGCAGCAGCATCGGCAGCAACGAGT
TAGTGGGAAGCGCTGGCATTTCCACCGCTACAACCGAACCCGCGGGCCAA
GGAGTCCCTCATGATGATGGCAGCAACAGCTGTTGGCAGCAGCACAAGGA
GCAGGCCACGTATACGAAAGCTCACCGTTTGGGTACCAGGGGTTTCGGAA
CCGGAGGAGGCGGGGGGGCTGCGGGGCAATCGGTGTCGGGAAGAGCAGCC
GGACCGGTCAGCGCCAGTGACCGGTTGGCGGCTCAGACGCTGCGTGCCCA
GGAAGTCCTACGGCGCAAAAGAGCCATCGAGGACGAGCGAAACAAACAGG
TCAGGGAGCGTTCTGCAGTTCTGCAACACGAAGCCCGACGGGACAAGCGG
CTGGAGAAGAAGAGGGCCGAAAAGCTGATCACATACGTTTACTGCGCCGT
TGGGGGCGCGCACTTTGGCCGTTGGAACTTTGGATGTACTCGACAATGTT
TGGTCATTTCTCAAACGGATAAGATGTTCGGAGCTGTGTTCCTTCTACAC
CTTCCGCCTCCTGGTCATGGACACGTCCATGTCGCGAATCTGTTCCAGCG
AGTATGGCGATTCAATCGAATACGACGCACCATAGCCAAGGTTCGAGAGT
CCACTCCAGCAGTGCGAACGATCGTGTTCAGCATGCGGCGAAAGGCGGCC
GTAGCGAGGAAGACCGTGGCCAGGCGCCACAAGACACAAGCCGCCGATCT
CATCCGCTGCGCCTTGAGGGTGGGTGCAGCTCCCGCCCGTCCTGCCTTGT
CGACTACCATGTCGTCTGCGTACTACCTTCGATATTTCTCCTGCTTAAGC
TGTCTCCCGCTAGCATAG back to top
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