EsuBft965_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft965_6a-0001
Unique NameEsuBft965_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:311229..312766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIH0
ProteomeIdEsuBft965_6
Protein domainsIPR004147
Protein domainsPTHR10566
Ownerapollo_admin@sb-roscoff.fr
Noteprobable protein kinase os:Scaffold_omobacterium violaceum (strain atcc 12472 dsm 30191 jcm 1249 nbrc [Automatic annotation]
Nb exon2
Max annot lvl2880.D7FIH0|-
Length632
Hectar predicted targeting categoryother localisation
Evalue3.06e-65
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionregulation of tocopherol cyclase activity
COG categoryE
Cross References
External references for this mRNA
DatabaseAccession
GO0071704
GO0008152
GO0016772
GO0051186
GO0044710
GO0005488
GO0009507
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft965_6aEsuBft965_6aEctocarpus subulatus male Bft15bgeneScaffold_527 311229..312766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_6a-0001-exonagat-exon-50350Ectocarpus subulatus male Bft15bexonScaffold_527 311229..311392 +
EsuBft965_6a-0001-exonEsuBft965_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 312299..312766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_6a-0001-cdsEsuBft965_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 311229..311392 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_6a-0001-exonagat-three_prime_utr-23572Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 312489..312766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_6a-0001EsuBft965_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 311229..312488 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft965_6a-0001 ID=EsuBft965_6a-0001|Name=EsuBft965_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=632bp|location=Sequence derived from alignment at Scaffold_527:311229..312766+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTAAGTCAGGTGCACGAGGCCTGGCTGGACGGCAAGCGCTACGC
GGTGAAAGTGCAAAGGCCGGGGCTCAAGAGGCTGTTCGAGGTGGACCTGA
ACAGCATCGGGGCTCTGGCGGGGATCCTGGATAGATTCGACCCAAAGCTC
GACGGCGCATCCAGGGACTGGGGGGCCATCTTCCGAGAGAGCAGCCGGGT
GCTCTACGAGGAGGTGGACTACACGCGGGAGGGCAAGAACGCAGAGAGGT
TTTCGGAGAACTTTAAGGGCACGGAGTGGATCAAGGCTCCCGGCATAAAC
TGGTCTCGCAGCTCGAGCAAGGTAAGGTGTGCGTGTGCGTGTGCGTGTGT
GTGATTTTTCATGTGCATCGACCGCGCTAACCGGCTGACCAATTAAAAGA
CGTCTGTGCCAGCTGGTAAAAATCAAGGTCCCTGGACGGGGGCCAAAATT
CGAAACATGCGTAATGCGCTAGATGCGAATGCCAATACGACTCTCTCTAC
ATATTCTTTCACGTAGGCACACATCTCAGCAACACAAATGCCCTCGCTCG
AATCTAGGAAGCCACTGATACAAAGAGCGGAGGACAACAAAAGGGTTAAT
TCAAGCCCAGCCGAAGCCAGGATATCGTGTGT
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protein sequence of EsuBft965_6a-0001

>EsuBft965_6 ID=EsuBft965_6|Name=EsuBft965_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=117bp
MPLSQVHEAWLDGKRYAVKVQRPGLKRLFEVDLNSIGALAGILDRFDPKL
DGASRDWGAIFRESSRVLYEEVDYTREGKNAERFSENFKGTEWIKAPGIN
WSRSSSKVRCACACACV
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mRNA from alignment at Scaffold_527:311229..312766+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft965_6a-0001 ID=EsuBft965_6a-0001|Name=EsuBft965_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1538bp|location=Sequence derived from alignment at Scaffold_527:311229..312766+ (Ectocarpus subulatus male Bft15b)
ATGCCGCTAAGTCAGGTGCACGAGGCCTGGCTGGACGGCAAGCGCTACGC
GGTGAAAGTGCAAAGGCCGGGGCTCAAGAGGCTGTTCGAGGTGGACCTGA
ACAGCATCGGGGCTCTGGCGGGGATCCTGGATAGATTCGACCCAAAGCTC
GACGGCGCATCCAGGTGAGGTTTCTTGGTGTTGCCTTCCCTCTACTGCTG
TAGAAGAGACAGAGGGACAGCCCGGCCCATGTTTCACAAACGCCAGAAGT
CTTTCTTCTGCCGCCGAGGTTTATGGAGGTGCCATGCGGTTGTGGGTGGA
GCCCTCAAATGCCGTGTGCGAAACTAAACCGCGGCGTCCTGTGTTTGGGA
GGGGTGCGGTCAGAGGTGACTCACGTGCACATCGGAAGCTCGTGTTGTAT
ATAGAGAGGGGGCGGATGAGACACTGACATGGGTTGAGAGCAGCTCTATC
ATTTTCTTGCGGCGAATCTGAGGAACGCAGCTGCTCGATTTTGTCAAGCA
TTTTCGTTGACGAGAAGTTGAGCGTGTTCGCCGAGATCAACATGGCCGCC
TTCGTAATGCCTCCACCGACCGTTGAAGCCTAGGGCTTGTGGTACGCGGC
TGGGTTGTACTCCGAGAGGGAACCACCAAACTAAAATATAGCTTTGATGC
CGCTATCGCATGCAACGGGTACTGCTGCTGTTGTTGTCAAGTTGGCGCAC
TTCCGGCGATGGGGCACAAGTGGCGCAAGCGGTTGATTCTTGCAATAGAC
GACTGACCGCTTCGAAACGGAAATGCAACCGGATAAGGCGCACTACGCTG
CCAATCGCGGCGCGGCCCCGTCGTACGTACATTTCACAGTGCTACACGAT
AGACGATAGTATGTACCGCCGGGGTGATGGCACGAAAGGGAGAGCCGCAT
GCTGTGATGTTTGCTTACGTGCTGCAGTAGACAGTTCGCGGCGATCGTGC
GTAGTACACGGCACGGACAGCGCTGCCTCTCGTTGGTACGTACGAACCCC
ACCCAAGGTAGTGCTGGTGTAGTCGTCGTCTTCGTCGCGCTTGACCGTCG
TGCCTCGTGCACGTGCACAGGGACTGGGGGGCCATCTTCCGAGAGAGCAG
CCGGGTGCTCTACGAGGAGGTGGACTACACGCGGGAGGGCAAGAACGCAG
AGAGGTTTTCGGAGAACTTTAAGGGCACGGAGTGGATCAAGGCTCCCGGC
ATAAACTGGTCTCGCAGCTCGAGCAAGGTAAGGTGTGCGTGTGCGTGTGC
GTGTGTGTGATTTTTCATGTGCATCGACCGCGCTAACCGGCTGACCAATT
AAAAGACGTCTGTGCCAGCTGGTAAAAATCAAGGTCCCTGGACGGGGGCC
AAAATTCGAAACATGCGTAATGCGCTAGATGCGAATGCCAATACGACTCT
CTCTACATATTCTTTCACGTAGGCACACATCTCAGCAACACAAATGCCCT
CGCTCGAATCTAGGAAGCCACTGATACAAAGAGCGGAGGACAACAAAAGG
GTTAATTCAAGCCCAGCCGAAGCCAGGATATCGTGTGT
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Coding sequence (CDS) from alignment at Scaffold_527:311229..312766+

>EsuBft965_6a-0001 ID=EsuBft965_6a-0001|Name=EsuBft965_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=354bp|location=Sequence derived from alignment at Scaffold_527:311229..312766+ (Ectocarpus subulatus male Bft15b)
ATGCCGCTAAGTCAGGTGCACGAGGCCTGGCTGGACGGCAAGCGCTACGC
GGTGAAAGTGCAAAGGCCGGGGCTCAAGAGGCTGTTCGAGGTGGACCTGA
ACAGCATCGGGGCTCTGGCGGGGATCCTGGATAGATTCGACCCAAAGCTC
GACGGCGCATCCAGGGACTGGGGGGCCATCTTCCGAGAGAGCAGCCGGGT
GCTCTACGAGGAGGTGGACTACACGCGGGAGGGCAAGAACGCAGAGAGGT
TTTCGGAGAACTTTAAGGGCACGGAGTGGATCAAGGCTCCCGGCATAAAC
TGGTCTCGCAGCTCGAGCAAGGTAAGGTGTGCGTGTGCGTGTGCGTGTGT
GTGA
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