EsuBft965_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft965_4a-0001
Unique NameEsuBft965_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:334277..337281 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FIH2
ProteomeIdEsuBft965_4
Protein domainsPTHR15238
Protein domainsIPR001705
Protein domainsIPR011332
Ownerapollo_admin@sb-roscoff.fr
Note50s ribosomal protein l33 os:magnetospirillum magneticum (strain amb-1 atcc 700264) gn:rpmg pe: [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length1386
Hectar predicted targeting categoryno signal peptide or anchor
Evalue5.48e-31
EggNOG OGsCOG0267@1|root,KOG3505@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L33
Ec32 orthologEc-28_000260.1
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameMRPL33
KEGG koko:K02913
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0006412
GO0003735
GO0005840
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4aEsuBft965_4aEctocarpus subulatus male Bft15bgeneScaffold_527 334277..337281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4a-0001EsuBft965_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 334314..336106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4a-0001-exonagat-exon-50341Ectocarpus subulatus male Bft15bexonScaffold_527 334277..334322 +
EsuBft965_4a-0001-exonagat-exon-50342Ectocarpus subulatus male Bft15bexonScaffold_527 335042..335152 +
EsuBft965_4a-0001-exonEsuBft965_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 336053..337281 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4a-0001-exonagat-five_prime_utr-15335Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 334277..334313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4a-0001-cdsEsuBft965_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 334314..334322 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_4a-0001-exonagat-three_prime_utr-23570Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 336107..337281 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft965_4a-0001 ID=EsuBft965_4a-0001|Name=EsuBft965_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1386bp|location=Sequence derived from alignment at Scaffold_527:334277..337281+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTGCGGGTGTAGTATCGGTACGTTTAGTAAACCGTCATGGCGAAGAAGA
AGGCTGGGCGTATCGCCATCAAACTGCTGAGCACGGCAGGGACCGGCTTC
TTCTATACCGCCTCGAAAAACGTGCGAAAGGCCACCGACAAGCTGGCCCT
CCGAAAGTACGACCCTGTTGTACGACAACATGTCGTTTTCACCGAAACGA
AGATCAAGTGAGCCGCCCCGGCCCGTCCGAGCATTTTGCTTGAGGTCAAC
CCGTTCTTCCCACATGAAGCGGCATCAAATGGAGCTCTAAGACGGAGGGA
GGTCACCTCTCACCAAACCTGTGATACGTGGGTTTGTCATCGATGACATC
GCGGGCGTCTAACATCGGCTTTTTTGCTCTTCGACCTGGCGTTTCACAGA
CTGAAGTCGACGCGGTGCGCATGTATGTGGGGTATCACGCGCAAAACGCT
GTTTCATCCTTGGTGTTTTAGGTTGGGACGGTGTGCTCGCACGTTGTACT
GTTGGTAGGAACTGGCGATGTGACAGGCTAACATGCAGAGACATCAAGCT
AGACAAGTCTGATGTACTGGCGTTACGGGGCAGAGTAGCAAGCGGTGACC
GAGCAATCACGGTTTTACACATGAGGATCCATTATCGGTAGGATGGCATT
TTCCGTATCACGTGAAGTTGTGCCTTGCCGTCGAATTAGATATGGCGTCG
TGCTGCTGTTGGTGATATCCCGAGCGTGAATTGTCAGTGCTGGGAGGTGC
ATCGCTTCTCTCGTTTCTAGTGTTACCTGATGCTCAGTAGGCTCAATAGA
GCCTATATGGACCCAATCGGCTGTGCAAATGGTCTGTTCCACGTTTGTTT
GTTTTTTTGTGCGAACAGAGGGTGTTGAGGTGGGCGGGCAAAAACGGGAG
GAGCGTAGTGTTTTCATTTTGGATCAAAACGGTGTTACGCGTTTGGGGCT
GAGTGTGTGAACCACAAGAATCATTTTGTTTGCTGTTCAAGGTCGGTCCT
TGGGCGCCTAGTCGCTTCCCGCGTTTTGGGGGTAGGATCATCGCCTGTGT
GACGAGGGCATTAAGGTGTTGCTGTGTATGAAGTTGATTTCACGGTGCCG
AACATAGTAATTAAAAATCGTCCTCGGTGCGTTGAGGGATGCAACGGAAA
AAAAAGAAACCACGGTGATGTCGCATTGTCAAGTACAGCATTGGTTGACG
GTAAAGGGTATCATTGCCGGGGTCCCCTGTGGGACCTCGTCCAGACTCTC
CCAGGGTTGCTACCATGTCGTATTCACCGATGCCATCAGGGGTGAAAAGA
AAAAAGTGTGACCTTTATCTCTCTTTTGGGCAGGTGGGTACACCTTGTAG
CTGGCCACCTTCTGTGGACACCACGCTGCCAGGGCC
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protein sequence of EsuBft965_4a-0001

>EsuBft965_4 ID=EsuBft965_4|Name=EsuBft965_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=57bp
MAKKKAGRIAIKLLSTAGTGFFYTASKNVRKATDKLALRKYDPVVRQHVV
FTETKIK
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mRNA from alignment at Scaffold_527:334277..337281+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft965_4a-0001 ID=EsuBft965_4a-0001|Name=EsuBft965_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3005bp|location=Sequence derived from alignment at Scaffold_527:334277..337281+ (Ectocarpus subulatus male Bft15b)
TCTGCGGGTGTAGTATCGGTACGTTTAGTAAACCGTCATGGCGAAGGTGA
GGGTTGGTTGTCCTCATTAGATGTATTCCTGTGACTTCTTGTATTACTGG
GCACGAGCTTGCGGAATCTCTCTGTCTCTTTGTTGTACGTGAAGGCTCCT
TTTCCCGCCCGCACGCAATCGCAGCCGCCCGTGCAAAGCTGACAGTCCCG
CCGACAATAAACTTCAGTACCAGGAGAAAGGGCGACAGAGAGGGAGTGCG
CGTTGCTGCTGTTGTTCTTCGCATCCAGCAGGAGTGTCCTACTACAGAAT
GTACAGATCTTTTATACCAACCTGAGGGATGTGCGCGCATGTTCTCGGCA
CTCGGCCCGTTGCCCTTGCCGCTGTTGTATAGGGTTCCTTCGTATTAGGA
CCGCCCTTTGCACACTTCTGTTACCAATTGCTATGACTTGTCGAGTGAGA
CGTTTATTGCAAAGCACCGCAGAGGAGTTGTTTTATGTAATCCCAGATCG
GAGCGCTTCGACTAGGAAAGCAAGCTCGCAGGGTTTTTAGATGCTGTGGT
CATTTGGAAAAGTTGGCTGTCTCCTGTTTGGATACATCGTGTACGTGTTC
GGCAGTTACAACATCATCCAGTATTCAAGCTCGAGTGGGATCATGTCTAA
CCTTGTTTATGGTATGCGTATGCACCCCTAGTTTGACGAAGCAGCCTTGT
CTGCTGAGTTTACTACTGATGGCCGGTGCTGCCTCTCTGTCTGCGTCCCT
CCTCCGTCTAAATAGAAGAAGGCTGGGCGTATCGCCATCAAACTGCTGAG
CACGGCAGGGACCGGCTTCTTCTATACCGCCTCGAAAAACGTGCGAAAGG
CCACCGACAAGCTGGCCCTCCGAAAGGTATGCAATACAGGCCTCGGAAGG
GAATTCTCGTTCAAAGCTCTTTTTGCTGAGGTATCCGAAGGGTTGGACAA
GGAAAAGATAACAAGTTTAGCAAGCCGGTGCTGGACTAGATATTTTTGTT
GGGTGTGTTTGAGATGATCTCCATTACCTCATTAGTCCTTGATTCTCTCC
CTTCTCGATGTCCCAGCCTGCAATACGGCTGCTACTTCGTACTATATGAT
TCGTTCGGGGTTTTCGCTTCTACCCAAGCGAAAGTGCACATGACATGTTG
GTGATGGGAAACAGGCTGGCACTGTACTACTCCGTCCGCCTCTGGCTGAT
GTGCTGTCCTACTCAACGCGGTAGCTGTACGATCTCTGGCTTGCCCCGGC
GGTTTGAAATGTGGTGGAAATGACACATCCGATAACATCCGCCGTTGTGA
TGGCATACATAGCTCGCCTGCCTCTGATCTTGAAGAGGCATGTGCGCATG
CCATTCACAAGCGTTCGCCCAAGCTCATGACCGGTCTCTTTGGATAGAAA
TCCTGAAGCATGTGCGTGTGCCGATAGGTCTGGACAGCTGTGTCTCCCAT
GCTAGTTTCACAATTGTCGAATGCGTGACCCGTACTACCCCGCTGAAATA
CTTACTCCGTCAGCGATGCACAGCGGCGCGAATGCGACGACATTAGACGT
GTGACCTTGGGCAACACAGGATGGCGCGCGTGGCTGGCGAAAGTGCGCGC
GGCGTGCTGCTTTTTCGAATCCTCACTCGTCAAGTGTCAATGAAGGCCGC
CTGCAGGTGGCCTTCACGCTATTCGCGCACGAGACGCGCCTTGACCGCTT
CCCCCTCCGTTATCCGCTTGCCTGTTCTGGCTTCGCCGGCGAACGGCGTG
TTCGCGCGTGTGTCGAATTCTTGCAGTACGACCCTGTTGTACGACAACAT
GTCGTTTTCACCGAAACGAAGATCAAGTGAGCCGCCCCGGCCCGTCCGAG
CATTTTGCTTGAGGTCAACCCGTTCTTCCCACATGAAGCGGCATCAAATG
GAGCTCTAAGACGGAGGGAGGTCACCTCTCACCAAACCTGTGATACGTGG
GTTTGTCATCGATGACATCGCGGGCGTCTAACATCGGCTTTTTTGCTCTT
CGACCTGGCGTTTCACAGACTGAAGTCGACGCGGTGCGCATGTATGTGGG
GTATCACGCGCAAAACGCTGTTTCATCCTTGGTGTTTTAGGTTGGGACGG
TGTGCTCGCACGTTGTACTGTTGGTAGGAACTGGCGATGTGACAGGCTAA
CATGCAGAGACATCAAGCTAGACAAGTCTGATGTACTGGCGTTACGGGGC
AGAGTAGCAAGCGGTGACCGAGCAATCACGGTTTTACACATGAGGATCCA
TTATCGGTAGGATGGCATTTTCCGTATCACGTGAAGTTGTGCCTTGCCGT
CGAATTAGATATGGCGTCGTGCTGCTGTTGGTGATATCCCGAGCGTGAAT
TGTCAGTGCTGGGAGGTGCATCGCTTCTCTCGTTTCTAGTGTTACCTGAT
GCTCAGTAGGCTCAATAGAGCCTATATGGACCCAATCGGCTGTGCAAATG
GTCTGTTCCACGTTTGTTTGTTTTTTTGTGCGAACAGAGGGTGTTGAGGT
GGGCGGGCAAAAACGGGAGGAGCGTAGTGTTTTCATTTTGGATCAAAACG
GTGTTACGCGTTTGGGGCTGAGTGTGTGAACCACAAGAATCATTTTGTTT
GCTGTTCAAGGTCGGTCCTTGGGCGCCTAGTCGCTTCCCGCGTTTTGGGG
GTAGGATCATCGCCTGTGTGACGAGGGCATTAAGGTGTTGCTGTGTATGA
AGTTGATTTCACGGTGCCGAACATAGTAATTAAAAATCGTCCTCGGTGCG
TTGAGGGATGCAACGGAAAAAAAAGAAACCACGGTGATGTCGCATTGTCA
AGTACAGCATTGGTTGACGGTAAAGGGTATCATTGCCGGGGTCCCCTGTG
GGACCTCGTCCAGACTCTCCCAGGGTTGCTACCATGTCGTATTCACCGAT
GCCATCAGGGGTGAAAAGAAAAAAGTGTGACCTTTATCTCTCTTTTGGGC
AGGTGGGTACACCTTGTAGCTGGCCACCTTCTGTGGACACCACGCTGCCA
GGGCC
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Coding sequence (CDS) from alignment at Scaffold_527:334277..337281+

>EsuBft965_4a-0001 ID=EsuBft965_4a-0001|Name=EsuBft965_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=174bp|location=Sequence derived from alignment at Scaffold_527:334277..337281+ (Ectocarpus subulatus male Bft15b)
ATGGCGAAGAAGAAGGCTGGGCGTATCGCCATCAAACTGCTGAGCACGGC
AGGGACCGGCTTCTTCTATACCGCCTCGAAAAACGTGCGAAAGGCCACCG
ACAAGCTGGCCCTCCGAAAGTACGACCCTGTTGTACGACAACATGTCGTT
TTCACCGAAACGAAGATCAAGTGA
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