EsuBft965_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft965_13a-0001
Unique NameEsuBft965_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_527contigScaffold_527:258659..259449 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft965_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length79
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13aEsuBft965_13aEctocarpus subulatus male Bft15bgeneScaffold_527 258659..259449 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13a-0001-exonEsuBft965_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_527 258659..259449 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13a-0001-exonagat-three_prime_utr-23567Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_527 258659..258851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13a-0001-cdsEsuBft965_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_527 258852..259418 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13a-0001-exonagat-five_prime_utr-15333Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_527 259419..259449 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft965_13a-0001EsuBft965_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_527 258852..259418 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft965_13a-0001 ID=EsuBft965_13a-0001|Name=EsuBft965_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=791bp|location=Sequence derived from alignment at Scaffold_527:258659..259449- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTTTGCCCCTCGAGGAAAGCCACATTGGGATGAGCTCTGCTGGACACG
AAGAGCGCACTGCTGCGAGCGAACAGATCCGCCCGCCGGTGCAGGAGGGC
CGCGATGCGAAGCTTGCAAGTTTGCAACTGCAGATTTCGCAATTGGCGGT
CCTGGTGGAGGGTTTGGTGAAGAAGAAGGAGCCTGGCAGCGTCGTGGCGG
ATGCAGCCAGTAAGGGGCGGCTGGGTTGCTGCCCCCGAAGACCAACAAGA
GCCCCTTCAGCCGCACGGCGGAGGCGGGGGATTTCTCCAGCAGCAAGCGA
GAGATGCTGGGCAAGGAGCCCGGCAGCTGCTGAAGGCGGCTGGGCCAGCA
GATCGGGAGCGAACCCTGTTGGACCAGCCGGAGTGGGCCCGGGCATAGGA
CCGGACTACGGGGAAGCGAGGGGGTTAAACCCCCAAGGTGAGATACCCGT
GCTTCGAGGAAATGGAGAATTCCTCGACGGCTACAGCAGTAGCCACATGA
AGAGAGTACAGTCAATGCCCCTCGTCTCGAAGGGGAGAGTCGCGGCCATG
GGTATGACTCGTGGAGAAAGTCGCTTATCCAAGCGGCCAAGACTGTAGGA
CTGGACGGCCAATTGATCGGCAACAACGAGTGACATGCACCTGTCGGCAA
CCGAAATGTGCCAAGCTCGGAGCTGTTCCACCTCCAATACACCAGCGACG
AGGTCCTGAGGGGCCTCCAAGCGTTCTATTTTGTGACCACTGCCATCGTC
AGAGAAGCCGACAAGGCGATCTTGAACAAATGCGAGACCAC
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protein sequence of EsuBft965_13a-0001

>EsuBft965_13 ID=EsuBft965_13|Name=EsuBft965_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=188bp
MSSAGHEERTAASEQIRPPVQEGRDAKLASLQLQISQLAVLVEGLVKKKE
PGSVVADAASKGRLGCCPRRPTRAPSAARRRRGISPAASERCWARSPAAA
EGGWASRSGANPVGPAGVGPGIGPDYGEARGLNPQGEIPVLRGNGEFLDG
YSSSHMKRVQSMPLVSKGRVAAMGMTRGESRLSKRPRL
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mRNA from alignment at Scaffold_527:258659..259449-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft965_13a-0001 ID=EsuBft965_13a-0001|Name=EsuBft965_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=791bp|location=Sequence derived from alignment at Scaffold_527:258659..259449- (Ectocarpus subulatus male Bft15b)
GTGTTTGCCCCTCGAGGAAAGCCACATTGGGATGAGCTCTGCTGGACACG
AAGAGCGCACTGCTGCGAGCGAACAGATCCGCCCGCCGGTGCAGGAGGGC
CGCGATGCGAAGCTTGCAAGTTTGCAACTGCAGATTTCGCAATTGGCGGT
CCTGGTGGAGGGTTTGGTGAAGAAGAAGGAGCCTGGCAGCGTCGTGGCGG
ATGCAGCCAGTAAGGGGCGGCTGGGTTGCTGCCCCCGAAGACCAACAAGA
GCCCCTTCAGCCGCACGGCGGAGGCGGGGGATTTCTCCAGCAGCAAGCGA
GAGATGCTGGGCAAGGAGCCCGGCAGCTGCTGAAGGCGGCTGGGCCAGCA
GATCGGGAGCGAACCCTGTTGGACCAGCCGGAGTGGGCCCGGGCATAGGA
CCGGACTACGGGGAAGCGAGGGGGTTAAACCCCCAAGGTGAGATACCCGT
GCTTCGAGGAAATGGAGAATTCCTCGACGGCTACAGCAGTAGCCACATGA
AGAGAGTACAGTCAATGCCCCTCGTCTCGAAGGGGAGAGTCGCGGCCATG
GGTATGACTCGTGGAGAAAGTCGCTTATCCAAGCGGCCAAGACTGTAGGA
CTGGACGGCCAATTGATCGGCAACAACGAGTGACATGCACCTGTCGGCAA
CCGAAATGTGCCAAGCTCGGAGCTGTTCCACCTCCAATACACCAGCGACG
AGGTCCTGAGGGGCCTCCAAGCGTTCTATTTTGTGACCACTGCCATCGTC
AGAGAAGCCGACAAGGCGATCTTGAACAAATGCGAGACCAC
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Coding sequence (CDS) from alignment at Scaffold_527:258659..259449-

>EsuBft965_13a-0001 ID=EsuBft965_13a-0001|Name=EsuBft965_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=567bp|location=Sequence derived from alignment at Scaffold_527:258659..259449- (Ectocarpus subulatus male Bft15b)
ATGAGCTCTGCTGGACACGAAGAGCGCACTGCTGCGAGCGAACAGATCCG
CCCGCCGGTGCAGGAGGGCCGCGATGCGAAGCTTGCAAGTTTGCAACTGC
AGATTTCGCAATTGGCGGTCCTGGTGGAGGGTTTGGTGAAGAAGAAGGAG
CCTGGCAGCGTCGTGGCGGATGCAGCCAGTAAGGGGCGGCTGGGTTGCTG
CCCCCGAAGACCAACAAGAGCCCCTTCAGCCGCACGGCGGAGGCGGGGGA
TTTCTCCAGCAGCAAGCGAGAGATGCTGGGCAAGGAGCCCGGCAGCTGCT
GAAGGCGGCTGGGCCAGCAGATCGGGAGCGAACCCTGTTGGACCAGCCGG
AGTGGGCCCGGGCATAGGACCGGACTACGGGGAAGCGAGGGGGTTAAACC
CCCAAGGTGAGATACCCGTGCTTCGAGGAAATGGAGAATTCCTCGACGGC
TACAGCAGTAGCCACATGAAGAGAGTACAGTCAATGCCCCTCGTCTCGAA
GGGGAGAGTCGCGGCCATGGGTATGACTCGTGGAGAAAGTCGCTTATCCA
AGCGGCCAAGACTGTAG
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