EsuBft964_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft964_9a-0001
Unique NameEsuBft964_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:328499..331614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog159749.K0R908
ProteomeIdEsuBft964_9
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2836|Bacillariophyta
Length146
Hectar predicted targeting categorychloroplast
Evalue2.26e-11
EggNOG OGs2C1G4@1|root,2S3K1@2759|Eukaryota,2XCB1@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_007080.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9aEsuBft964_9aEctocarpus subulatus male Bft15bgeneScaffold_604 328499..331614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9a-0001EsuBft964_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 328701..331143 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9a-0001-exonagat-exon-110619Ectocarpus subulatus male Bft15bexonScaffold_604 328499..329111 +
EsuBft964_9a-0001-exonEsuBft964_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 329987..330201 +
EsuBft964_9a-0001-exonagat-exon-110620Ectocarpus subulatus male Bft15bexonScaffold_604 330981..331614 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9a-0001-exonagat-five_prime_utr-15331Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 328499..328700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9a-0001-cdsEsuBft964_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 328701..329111 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_9a-0001-exonagat-three_prime_utr-23564Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 331144..331614 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1462bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGG
GCCTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAG
AGCCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACAC
GGCCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGG
AGTACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTC
AGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGC
AAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGG
CCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCGGCCT
CATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGTTCCT
CACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCTTGTG
TTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGATATG
TATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTAAGTC
GGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCGTTTT
GTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCGGACT
CGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTAGAAC
TGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTCACAC
CTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGTGCTA
GACTGTGGAAGT
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protein sequence of EsuBft964_9a-0001

>EsuBft964_9 ID=EsuBft964_9|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=262bp
MTGSGCRALAVLLTLYSSPSGAFLAPTKAALGCFHQHRSASSPTCLSMTA
RDELRSGSISSSRRGFLEGGAVALLASVAAIGLPEPSVAKGIDLSEVKGL
DVSEVMHLGAGSSGGKATKPLRDCLLNVERVRISTKQLEDTLTNDGAPPG
LTGLVKGLIKNYKLDESLQQGAKYIESSGDRNTAASAGREALEYLAQTAE
YFPVEVDDRTGAPKKLSSEALEFTVNALIATRAKLDLFLSKVPSDALAEA
RAEIKSEGGDQS
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mRNA from alignment at Scaffold_604:328499..331614+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3116bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
TTTGAAGGGCGAGGGTAACAGCACAGGTTGAACACCTCCGCTGCACGCAC
CTCAGCAGGAATCTTGCAAGAGTATTACCGGCATTACCCCTTGAAGTGTT
TAAGTATATCAGCGGCGGACGCCTGCAAAGAAGCCGTGGTGACCCGTGCG
TACACATCTCCGCTTGCCTCAGGCAACAGCAGTACTACATACAGCAGTAG
TGATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTAT
TCATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTG
TTTCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGG
CGCGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTC
TTGGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCT
GCCCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCT
TGGACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAA
GCGACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCAT
CTCGACCAAGCAGGTGACGAAGCACCGCAGGCTGTGCGGGAAGTGGTTTG
ATGACACGTATCATTCGATGTCGGCCCATTGGCACTCCCTCTTGCTTCTC
GAGCAACAGGACTAGATGAACGGACTTGCAAGGCACCACGAGTTTATCCC
TCTGCTGTTTCATGCACTTGCGCCATCGGTATGACTGCTGTGAAATGCAC
CCATTGGAGTAAGAATCCCGTAAGCCGCTCACGACTGCTATGAAACGCAC
CAATTGGAGTAAGAATCCCGCAAGCCGCCGCATGTGTAAAACAATGTGGA
TCGCGGCAAGCTCGAGAACCGAGCGGCGGTACAGGCAGTAGTAGTACAGA
GTAGACTCACAACCAGGCTGTCGCTAGGCAGAACTTATGCTGGCGGTGTG
TGTTTGCGTGCGAAGTCCTCCCGCTAAGATACACCCTCCATCGATACATC
CTTTTCGAGCGTAACGAAAATACCGTACCACACCAGGTATCTCAGCAAAT
CCGTTTGTTGCAGCGCAGCATGAATCCGGTGTACGTATGTGTGTACACCT
TGAAGTAACCCATATCTATTGACAAAAGGGACACAGACAATGGTACAACA
CGAGTTGTCTTACACCAGGGCAGCGGTGTACACAAAGGGCGGTGGAATTC
AGTCGGAACAGAGCCGCACCACACTCGCTCTATGCACCCCGTGGTGGTAT
ACTCCCACTTGTAGTACCAACTGTGAACCCCACATCAACGAGTAGTTAGC
TTTTTTTTTCGCCCCGTGCTATGTAGAAGGGGGCTTGTTGGCATGGAACA
TGCCATCACCGAACCCCTTCGTTTGGTATCCCCCCCCTCACCACCTTTTT
TCGTGGTCTTTGTATTTTGTTGCCTTCCCGCCATACAGCTCGAGGACACC
CTGACCAACGACGGCGCACCGCCGGGCCTGACCGGGCTTGTCAAGGGGCT
CATCAAGAACTACAAGCTGGACGAGAGCCTCCAGCAGGGTGCCAAGTACA
TCGAATCTAGCGGGGACAGAAACACGGCCGCGTCCGCGGGGAGAGAGGCG
CTGGAGTACCTGGCGCAGACGGCGGAGTACTTTCCCGTTGAAGTGGATGA
CAGGTATGTAGGCCAACATCTACACATCGGTTCGGCAGTCAGGCACTTTT
GTTTCAAGAGAACGGTGGCAAGGCGTTGGTGATGGCAGTACTTCTTGCAG
CACTGACGTGCATGTAGTAGGGAATTCTCCCTCATTCTAGTTCGCGGCCC
TACCGGAGTTCTAGATGCTTGCCATGCTACTGACCCAGCTCTGCCAAGGC
CGTCCAGAAGCAGCACCTGCAAGAAAAGCAACATCAGAGCAGCAGCATCA
TCATCAGCAAATATCCAGCGTGGGTGCTTGAGGAACTCGGATGTTCTGCT
GCAGTTCGCGGCCTTGAACGACACTTCCATTTTGCCGCAAAGTAGCGGCT
GGCGTGCAACAAGTACTATTTGGTTGCTAAGTGTGCGCGTGTGCGTGGGT
TGTGCGCGTTGCTTTGTCACTCCCCTTAGAGAGGGCTTTGTAATCGCGTT
CCTTGCCACCCCAGTGAGCCGAGGGTGAGTCGGAACGGGGTGAGCCGGAG
GGGGGAGTGCTCATGTTTTGCATGCCTAGTGGTTAAACCATTGACCATGC
GTCCTCGAGAGGACGGAGCATTGTTCCGACAGAACCGATCACCGATGGCC
AATTCGTTGCGAAGGAGGGGTGAGCGTTTTGTTTGGGGAGGAGGGCGGGA
AGTGGCACTGTTCGTTTCTATCCTGGCTGTTCCTTGTCTCCGTCCCCCCT
CCGTTCAACTGTTCCCTCTTGACATCTATCTGTACCTTCCCCCGCTTCCT
GCATCTCTTCTCGTCACCACACAACCCGTCAGGACCGGGGCGCCCAAGAA
ACTCAGCTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCC
GAGCAAAACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCA
GAGGCCAGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGAGGCCG
GCCTCATGCCCTTGTTGCTGTTGCGGCGGAATGCGGTCGGCGTCTGTAGT
TCCTCACACCGCGGCTTGTGGTACCCGGGAATCTGTCTGTAGAGCTGCCT
TGTGTTGGCTCCGTGTTTGAATGTTGTCAGATTTGCCGGTGGGATACGGA
TATGTATGCGGGGCTAGACGCCGTCTGTGGACTGCCGAGGCCAAGCGTTA
AGTCGGAAGAAGTCAATCGTGTAGATCACGAGACCTTGTTGCTTTTTTCG
TTTTGTCTAGCCAGTGGAAAGCTCTTGCTTGGCGCTGATTCTAAACTTCG
GACTCGGTGAAAGTTTTCGTTTTGTAGGCATGCAACGGAAGAAAAACGTA
GAACTGAAATATTTACAGTATTTTGTGCACGTTTCATATGACATCACGTC
ACACCTCTTCCGCGATGATTGTTGGCTTTGCATCCCAACCTTGTTACTGT
GCTAGACTGTGGAAGT
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Coding sequence (CDS) from alignment at Scaffold_604:328499..331614+

>EsuBft964_9a-0001 ID=EsuBft964_9a-0001|Name=EsuBft964_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=789bp|location=Sequence derived from alignment at Scaffold_604:328499..331614+ (Ectocarpus subulatus male Bft15b)
ATGACTGGTTCAGGATGTCGGGCGTTGGCGGTGCTCCTCACCTTGTATTC
ATCTCCATCTGGCGCCTTCCTAGCTCCAACGAAGGCAGCATTGGGTTGTT
TCCACCAACATCGATCGGCATCTAGCCCTACATGCTTGTCCATGACGGCG
CGGGATGAACTCCGCAGTGGCAGCATCAGCAGCAGTCGGCGAGGCTTCTT
GGAGGGGGGGGCTGTTGCCTTGCTAGCGTCGGTCGCAGCTATTGGGCTGC
CCGAACCATCTGTTGCGAAAGGGATCGACTTGTCAGAAGTAAAGGGCTTG
GACGTCAGCGAAGTAATGCACTTGGGCGCTGGCTCGTCGGGTGGGAAAGC
GACGAAGCCGCTGAGAGACTGCTTGCTGAACGTCGAAAGGGTGCGCATCT
CGACCAAGCAGCTCGAGGACACCCTGACCAACGACGGCGCACCGCCGGGC
CTGACCGGGCTTGTCAAGGGGCTCATCAAGAACTACAAGCTGGACGAGAG
CCTCCAGCAGGGTGCCAAGTACATCGAATCTAGCGGGGACAGAAACACGG
CCGCGTCCGCGGGGAGAGAGGCGCTGGAGTACCTGGCGCAGACGGCGGAG
TACTTTCCCGTTGAAGTGGATGACAGGACCGGGGCGCCCAAGAAACTCAG
CTCGGAAGCTCTCGAGTTCACAGTAAACGCCCTGATCGCAACCCGAGCAA
AACTCGATTTGTTCTTGTCCAAGGTCCCGTCGGACGCACTAGCAGAGGCC
AGGGCAGAGATTAAATCAGAGGGCGGCGACCAGTCATGA
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