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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft964_4 |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 2 |
Length | 387 |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | Protein of unknown function DUF583 |
Ec32 ortholog | Ec-06_007160.1 |
Date last modified | 2016-06-13 |
Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3878bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCACGGCGTCGATTAGGGTAAGCAACAACCGCAACGTTCGCAACCCGC GAAACTAACCTCCCTTCCTGCTCCCACCCTCACGCTTTTCAATTCCATGC GTCTCTCGGTTCACCCTTACAAGTAGAGTATTGGAGAAGATTGTGTCGGT TTTTGCTCCCGCTCACTGCAAAGAGTTGAACGCACTCGCTTGGGACTGCT GTAGTATTTACGTATTTTCTCGAACGGGCATTACGCTAGTCTTGCCGTAT TGGCACGTTTTCTAGAAGTTGTGTTTTATTGTGTGGCGAAGTAAAGTGAG AATTGGGCGTAATGGCCGGAAGGTCTTGAAGGGTGGCAACTGCACCCGTG GAGGAACACTCTTCCAGGCTATCAATGGGCGAACAACTCCACACGGTGGG TGGTGGAATCGAGAACTCTCGCCCTCCCTCGACGAGAGCACGGCCGGTGA AAGAAGCAAGGCCTGGAGTGACGGACACATTAACGGTGAACCCTTCGGCC ACCGCCAGGGCGGCGAAGTATTTCGCTCCCGCCGCCACCGCCGCCGGCCC ATCCTCACGGAAAAGCATCCCACCAACCCTTCCCCCGTCCTACTCCTCTT CGGTGGTCACCGCCGCTACGCGGGCACAAGTTGACGAAAGCAGCAAGCCC TTGAACTCCGCTCCTTCCCCTTCCCCCCCGATTACCCTCAAACTACCCCC CGCCCCCGCCGCCGCCGGCCATCACCAGGGCGTCACCGACACGGCCACCC TCAAGGAACGCGCCCTGCTCGAGGCCAACCCGGCGCCGCCGTCCGCTTCG TCTTCGACGACCGGAGCCGCTCCCGCGCCTGCGCCTTCGGCGGTTGTTGC ATCCACGACCCCTTCCAACGGTGGTGCCTCCGCTCCAACCGCCGAGGACG CGGTGGTTGCTGCCGGAGGGGGCACGCAGACCGGAAATGTGCCGGAGGCG GCATCGGTGGAGGAGGCCGCCCCGGGGCCCTCCCCCTCATCATGACCAGA GATTCTACCATCAGGTCGTGACTGATAACGGGGGGGGATGAGGGGGCGTT CTGATCAGGCGCGGTTTCTCGCTCGCGTTCACTGCAAGTTACATGTTATG TGGGTTTTAAAGGTGCGCGGGGCAGCACGTTTGCGAAGCTGTGACTGCTG GGCGTCCCCCCCAACCCTTTTTATTCCGCGCTTTTCGCTGGCGTTTTGCG AGGGGGGGGGGGGGCAACTGGGGCGTTTATTAGTTTTCCTTGTCGGCAGA CTTTGCTGATATCGATATTTCATGTGTATATATCCACGCCCCTGCTGCAG TGGTGGAGAGGACCACCGTCGACGTCGAATTACGATGCCTCGCGACGCGT AGCCCCTAAAGGTGTTGCGCCGGGGGCGAAAGGGGGTGAGGCCAAAGTTT GTAGAAGGTGGTCGGCTGCTCGTTTTTGTCATGTCTGCAGTGGTCAATTT TTTCGGGTCGGTCTTGTTGGATCGACCAATTATTCGTGGATAGTTGTTTT TTGGCTGTCGTCGTCCACATGTAGGTGCCGCGCCTGCTAGAGTCGGCTCG TTGTAAAGCCACCCACGATAAGGTTTTAGAAAAATGAAATCATCGAGAAA ATGATAAGCGTGTATCGTGGGGGGCACGGTTGCATTTTGGTTTGTTGCCT CTCGGGGGCAGGGCGTATTTGTAGACAGGTGGACGCGGTGTGTGTGGGGG GGCATCCGGTTCCTGCGTGTTTCGGTTCGAAAGTGCTCGCCGAAAGTTGT AGGGGCGTTCAGGTCACACAAAGGGTTTTGACGTCGGAGCGGTTGCGGCC GACTGGGGCCTCCAGCGGCAGTCGAGATACGTTCAATAACACTTGTGCTT TAGGGATTGCACGTGATTGAAGTTTTTCGGGGAATGTATTCATTCCTGCA GTGGGGGAGAGGTGGAGTATCCTGGATAGTTTTTTGTGTGTTTGATAGTT TTTGGCGCGATTTGGTTCTCCCCCCTCCCTGCCCCCTCACACACAATTAT GTCCATTCACACACAGAAACGAACGACTCTGACTTCGTTTTTGCTTGGGC CGATGGGTGACCTTGAGCCGGTTGTCTCCTGTGTTTTTTCCTAGCGAGAG TTGTTCCTTTAGACCGACGCAGGCGCGACTGGCCGACAAGTCGTCGCCGT GGCTCGTGTACTTCGATTGATCTGCAGATACATGCGATAGATGCGTGCGT AGGTCGCTGCTGCTAAGAGTCTATGTAGACGCCCGCGGCGAGAGCATCTG CAAGTGTGGCCCGTTCTTGTCTGTTGTTCCGGGTGAAGTCGAGGGTTTTC GCTGGTGAAGCTCTCTCGTCTTTTCGTGCTTCAGAGGCCGCCAAAGTTGA AAAGACGTCGTCGTCATTGTCGTCATTTTTTTTTTTTCGGTGCCCGGGTG TAGAGGAGGCTGGCTGCATCAAAGTGCGCTCTAGAATGCGCGCATGCTTG TGGGAAGGCAAGGGCGGGGGGGTCGAGAATGTGAGACGGCGGGAGGGGGG GTCTGCGTGAACGTTGGCGTCTTCCTTCCCGGTGTGATGTCTTGTTCCTG TGTATTTATATCTTGTTTTTGTCTTCTCATAAGTGGCACGTTTGTTTTCC GCGCTTCTGGCGCGCGTGTACGCAAGTGTTGTCTTGACCTTGGGCAGCTG CGTACATACCACGGTTTGGTTCCACATACTGACTGTCGAGGCCAGCGCCG CTGGACGAAGAAAGCTTGACGCTCGGCGAACGGTGTTTTCTGTGATGTTA GGTTGCTGCACCAACCGTGCACGAGGGGAGATGGCGCGCAGGGCTCCCCA CGTCATTTTTCCATGAGAGTTTTGATGTTGGACGCACATACCAAATACCA AATATACCTGTTTGTTGTTGCGCGATGGATACGCGAGGCGAGATGAAGCG GTGCGTGTTTCTTCGTCCCTCTCCAAGTATTGCGTGTAGGTGGGAGTGGG GCTTGTTCCATGCAAAGGCTGATTCAGGGTGAAAGGAGTGGTATCAAGGC GTGGAAGGTATCGCGTGCTTGGGGCTCGCCGAATTTTGTGCTTCCTTTGT CGCTTGGAGAACGCCCGTTGATCAACCGCGATTTTTTTTGTCGTGTGTTC AGTTTCTTCCTTCCGTGTTGGCGACTTCATGTTCGCTTTAGAAGTGGGGA CCGCACTGGGAGGCAGTTTTTGGTGCGTTTCTTGCCAGTTTTTTTTTTTG GGGGGGGGGTGACAACGGTATCTGTCATACGCGTGATCGGCCGGAAGTTT GCCTTCACAGCGCTCGGACGTGCGTTGTTGGTAGTTTTTTTACATCACGG TGGCGTATGTGAAGTGTTGGTTCTTGTCGGCTAATACTGTGTTTTTTTGT GTCTTGCTCGACTCTCCGGCGGCGAGGTGTGGTCTGGTTGGTTTGTTGGG GCCGCCTTTAGTGTCGCAGCAGTAGTATCACGGTACACAGCACCAACCAG TCGACTATTGGCTTTCTCTACGCGTATGATTTCTTGTGTCAGCGCAAGGG AAAGCGGTAACTGCTGCTGCTGACCTTTTGCGCTCGTGGGGTGCCCCAGG AGTGCATGTCGGGGTGGGGTGGGGGGTTCAGGGGTCCGGTGCGGTCAATT CTTCCGCCCCTTTGTGGAGTTTCGGCGAGTGCGCGGGCCTGGGTGCCTCT TCGCAGTTAGTTGTGGTGGAAGTTCAGTCATGTATGCGCAGGTTGTGGGA CTACTAGTACTGCAGGGACCGCCCCAACATACCACCCATGTTTGTTTTTC TTCTGGATCATGGGGGTGGTACGCGTCGTTTTTGAGAACGTTGATCGATA ATGAGCAATAGACATAAAAAACAAGAACATTATGAGGATGGCTACTGAAC TGGATTCATCCCCCCCGAAAACGTTGAT back to topprotein sequence of EsuBft964_4a-0001 >EsuBft964_4 ID=EsuBft964_4|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MGEQLHTVGGGIENSRPPSTRARPVKEARPGVTDTLTVNPSATARAAKYF APAATAAGPSSRKSIPPTLPPSYSSSVVTAATRAQVDESSKPLNSAPSPS PPITLKLPPAPAAAGHHQGVTDTATLKERALLEANPAPPSASSSTTGAAP APAPSAVVASTTPSNGGASAPTAEDAVVAAGGGTQTGNVPEAASVEEAAP GPSPSS back to topmRNA from alignment at Scaffold_604:282536..286786+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4251bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b) CCCCACGGCGTCGATTAGGGTAAGCAACAACCGCAACGTTCGCAACCCGC
GAAACTAACCTCCCTTCCTGCTCCCACCCTCACGCTTTTCAATTCCATGC
GTCTCTCGGTTCACCCTTACAAGTAGAGTATTGGAGAAGATTGTGTCGGT
TTTTGCTCCCGCTCACTGCAAAGAGTTGAACGCACTCGCTTGGGACTGCT
GTAGTATTTACGTATTTTCTCGAACGGGCATTACGCTAGTCTTGCCGTAT
TGGCACGTTTTCTAGAAGTTGTGTTTTATTGTGTGGCGAAGTAAAGTGAG
AATTGGGCGTAATGGCCGGAAGGTCTTGAAGGGTGGCAACTGCACCCGTG
GAGGAACACTCTTCCAGGCTATCAATGGGCGAACAACTCCACACGGTGGG
TGGTGGAATCGAGAACTCTCGCCCTCCCTCGACGAGAGCACGGCCGGTGA
AAGAAGCAAGGCCTGTTCTTGGGCAATCAAACACGTTCGCGCCTGCTTGC
TACAGCCCATGTACGAACCCGCAGGCATATAACGGTTGCTACCGTACATG
ATAATAATACCTCAGGCAGGAACCGCAGGAGGGGGTCCAACCCCCCCTCC
TATGTGACCCCGGTCGGGTCGTCTAGCTGGTAGAAGTGGAGGATAGGGGC
CAGAGGGGCAGACGACAGAGTCCAATGATTGGAGAAAAAATAAATATATA
TATATACATATATAAAGGTGGAAAGGTGATGCTACCTTCGGCTCCACTTT
ACCTGGATCTTACAGTATTCCCCTGTCTTTGTTCCGTTTTTTTTTCTGTT
GTGGTGTTGCCGAAAAAAACTCGTTTTTTTTTCTCAGGGAGTGACGGACA
CATTAACGGTGAACCCTTCGGCCACCGCCAGGGCGGCGAAGTATTTCGCT
CCCGCCGCCACCGCCGCCGGCCCATCCTCACGGAAAAGCATCCCACCAAC
CCTTCCCCCGTCCTACTCCTCTTCGGTGGTCACCGCCGCTACGCGGGCAC
AAGTTGACGAAAGCAGCAAGCCCTTGAACTCCGCTCCTTCCCCTTCCCCC
CCGATTACCCTCAAACTACCCCCCGCCCCCGCCGCCGCCGGCCATCACCA
GGGCGTCACCGACACGGCCACCCTCAAGGAACGCGCCCTGCTCGAGGCCA
ACCCGGCGCCGCCGTCCGCTTCGTCTTCGACGACCGGAGCCGCTCCCGCG
CCTGCGCCTTCGGCGGTTGTTGCATCCACGACCCCTTCCAACGGTGGTGC
CTCCGCTCCAACCGCCGAGGACGCGGTGGTTGCTGCCGGAGGGGGCACGC
AGACCGGAAATGTGCCGGAGGCGGCATCGGTGGAGGAGGCCGCCCCGGGG
CCCTCCCCCTCATCATGACCAGAGATTCTACCATCAGGTCGTGACTGATA
ACGGGGGGGGATGAGGGGGCGTTCTGATCAGGCGCGGTTTCTCGCTCGCG
TTCACTGCAAGTTACATGTTATGTGGGTTTTAAAGGTGCGCGGGGCAGCA
CGTTTGCGAAGCTGTGACTGCTGGGCGTCCCCCCCAACCCTTTTTATTCC
GCGCTTTTCGCTGGCGTTTTGCGAGGGGGGGGGGGGGCAACTGGGGCGTT
TATTAGTTTTCCTTGTCGGCAGACTTTGCTGATATCGATATTTCATGTGT
ATATATCCACGCCCCTGCTGCAGTGGTGGAGAGGACCACCGTCGACGTCG
AATTACGATGCCTCGCGACGCGTAGCCCCTAAAGGTGTTGCGCCGGGGGC
GAAAGGGGGTGAGGCCAAAGTTTGTAGAAGGTGGTCGGCTGCTCGTTTTT
GTCATGTCTGCAGTGGTCAATTTTTTCGGGTCGGTCTTGTTGGATCGACC
AATTATTCGTGGATAGTTGTTTTTTGGCTGTCGTCGTCCACATGTAGGTG
CCGCGCCTGCTAGAGTCGGCTCGTTGTAAAGCCACCCACGATAAGGTTTT
AGAAAAATGAAATCATCGAGAAAATGATAAGCGTGTATCGTGGGGGGCAC
GGTTGCATTTTGGTTTGTTGCCTCTCGGGGGCAGGGCGTATTTGTAGACA
GGTGGACGCGGTGTGTGTGGGGGGGCATCCGGTTCCTGCGTGTTTCGGTT
CGAAAGTGCTCGCCGAAAGTTGTAGGGGCGTTCAGGTCACACAAAGGGTT
TTGACGTCGGAGCGGTTGCGGCCGACTGGGGCCTCCAGCGGCAGTCGAGA
TACGTTCAATAACACTTGTGCTTTAGGGATTGCACGTGATTGAAGTTTTT
CGGGGAATGTATTCATTCCTGCAGTGGGGGAGAGGTGGAGTATCCTGGAT
AGTTTTTTGTGTGTTTGATAGTTTTTGGCGCGATTTGGTTCTCCCCCCTC
CCTGCCCCCTCACACACAATTATGTCCATTCACACACAGAAACGAACGAC
TCTGACTTCGTTTTTGCTTGGGCCGATGGGTGACCTTGAGCCGGTTGTCT
CCTGTGTTTTTTCCTAGCGAGAGTTGTTCCTTTAGACCGACGCAGGCGCG
ACTGGCCGACAAGTCGTCGCCGTGGCTCGTGTACTTCGATTGATCTGCAG
ATACATGCGATAGATGCGTGCGTAGGTCGCTGCTGCTAAGAGTCTATGTA
GACGCCCGCGGCGAGAGCATCTGCAAGTGTGGCCCGTTCTTGTCTGTTGT
TCCGGGTGAAGTCGAGGGTTTTCGCTGGTGAAGCTCTCTCGTCTTTTCGT
GCTTCAGAGGCCGCCAAAGTTGAAAAGACGTCGTCGTCATTGTCGTCATT
TTTTTTTTTTCGGTGCCCGGGTGTAGAGGAGGCTGGCTGCATCAAAGTGC
GCTCTAGAATGCGCGCATGCTTGTGGGAAGGCAAGGGCGGGGGGGTCGAG
AATGTGAGACGGCGGGAGGGGGGGTCTGCGTGAACGTTGGCGTCTTCCTT
CCCGGTGTGATGTCTTGTTCCTGTGTATTTATATCTTGTTTTTGTCTTCT
CATAAGTGGCACGTTTGTTTTCCGCGCTTCTGGCGCGCGTGTACGCAAGT
GTTGTCTTGACCTTGGGCAGCTGCGTACATACCACGGTTTGGTTCCACAT
ACTGACTGTCGAGGCCAGCGCCGCTGGACGAAGAAAGCTTGACGCTCGGC
GAACGGTGTTTTCTGTGATGTTAGGTTGCTGCACCAACCGTGCACGAGGG
GAGATGGCGCGCAGGGCTCCCCACGTCATTTTTCCATGAGAGTTTTGATG
TTGGACGCACATACCAAATACCAAATATACCTGTTTGTTGTTGCGCGATG
GATACGCGAGGCGAGATGAAGCGGTGCGTGTTTCTTCGTCCCTCTCCAAG
TATTGCGTGTAGGTGGGAGTGGGGCTTGTTCCATGCAAAGGCTGATTCAG
GGTGAAAGGAGTGGTATCAAGGCGTGGAAGGTATCGCGTGCTTGGGGCTC
GCCGAATTTTGTGCTTCCTTTGTCGCTTGGAGAACGCCCGTTGATCAACC
GCGATTTTTTTTGTCGTGTGTTCAGTTTCTTCCTTCCGTGTTGGCGACTT
CATGTTCGCTTTAGAAGTGGGGACCGCACTGGGAGGCAGTTTTTGGTGCG
TTTCTTGCCAGTTTTTTTTTTTGGGGGGGGGGTGACAACGGTATCTGTCA
TACGCGTGATCGGCCGGAAGTTTGCCTTCACAGCGCTCGGACGTGCGTTG
TTGGTAGTTTTTTTACATCACGGTGGCGTATGTGAAGTGTTGGTTCTTGT
CGGCTAATACTGTGTTTTTTTGTGTCTTGCTCGACTCTCCGGCGGCGAGG
TGTGGTCTGGTTGGTTTGTTGGGGCCGCCTTTAGTGTCGCAGCAGTAGTA
TCACGGTACACAGCACCAACCAGTCGACTATTGGCTTTCTCTACGCGTAT
GATTTCTTGTGTCAGCGCAAGGGAAAGCGGTAACTGCTGCTGCTGACCTT
TTGCGCTCGTGGGGTGCCCCAGGAGTGCATGTCGGGGTGGGGTGGGGGGT
TCAGGGGTCCGGTGCGGTCAATTCTTCCGCCCCTTTGTGGAGTTTCGGCG
AGTGCGCGGGCCTGGGTGCCTCTTCGCAGTTAGTTGTGGTGGAAGTTCAG
TCATGTATGCGCAGGTTGTGGGACTACTAGTACTGCAGGGACCGCCCCAA
CATACCACCCATGTTTGTTTTTCTTCTGGATCATGGGGGTGGTACGCGTC
GTTTTTGAGAACGTTGATCGATAATGAGCAATAGACATAAAAAACAAGAA
CATTATGAGGATGGCTACTGAACTGGATTCATCCCCCCCGAAAACGTTGA
T back to topCoding sequence (CDS) from alignment at Scaffold_604:282536..286786+ >EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b) ATGGGCGAACAACTCCACACGGTGGGTGGTGGAATCGAGAACTCTCGCCC TCCCTCGACGAGAGCACGGCCGGTGAAAGAAGCAAGGCCTGGAGTGACGG ACACATTAACGGTGAACCCTTCGGCCACCGCCAGGGCGGCGAAGTATTTC GCTCCCGCCGCCACCGCCGCCGGCCCATCCTCACGGAAAAGCATCCCACC AACCCTTCCCCCGTCCTACTCCTCTTCGGTGGTCACCGCCGCTACGCGGG CACAAGTTGACGAAAGCAGCAAGCCCTTGAACTCCGCTCCTTCCCCTTCC CCCCCGATTACCCTCAAACTACCCCCCGCCCCCGCCGCCGCCGGCCATCA CCAGGGCGTCACCGACACGGCCACCCTCAAGGAACGCGCCCTGCTCGAGG CCAACCCGGCGCCGCCGTCCGCTTCGTCTTCGACGACCGGAGCCGCTCCC GCGCCTGCGCCTTCGGCGGTTGTTGCATCCACGACCCCTTCCAACGGTGG TGCCTCCGCTCCAACCGCCGAGGACGCGGTGGTTGCTGCCGGAGGGGGCA CGCAGACCGGAAATGTGCCGGAGGCGGCATCGGTGGAGGAGGCCGCCCCG GGGCCCTCCCCCTCATCATGA back to top
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