EsuBft964_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft964_4a-0001
Unique NameEsuBft964_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:282536..286786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft964_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length387
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-06_007160.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4aEsuBft964_4aEctocarpus subulatus male Bft15bgeneScaffold_604 282536..286786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4a-0001-exonEsuBft964_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 282536..282999 +
EsuBft964_4a-0001-exonagat-exon-110587Ectocarpus subulatus male Bft15bexonScaffold_604 283373..286786 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4a-0001-exonagat-five_prime_utr-15327Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 282536..282909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4a-0001-cdsEsuBft964_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 282910..282999 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4a-0001-exonagat-three_prime_utr-23560Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 283904..286786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_4a-0001EsuBft964_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 282910..283903 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3878bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCACGGCGTCGATTAGGGTAAGCAACAACCGCAACGTTCGCAACCCGC
GAAACTAACCTCCCTTCCTGCTCCCACCCTCACGCTTTTCAATTCCATGC
GTCTCTCGGTTCACCCTTACAAGTAGAGTATTGGAGAAGATTGTGTCGGT
TTTTGCTCCCGCTCACTGCAAAGAGTTGAACGCACTCGCTTGGGACTGCT
GTAGTATTTACGTATTTTCTCGAACGGGCATTACGCTAGTCTTGCCGTAT
TGGCACGTTTTCTAGAAGTTGTGTTTTATTGTGTGGCGAAGTAAAGTGAG
AATTGGGCGTAATGGCCGGAAGGTCTTGAAGGGTGGCAACTGCACCCGTG
GAGGAACACTCTTCCAGGCTATCAATGGGCGAACAACTCCACACGGTGGG
TGGTGGAATCGAGAACTCTCGCCCTCCCTCGACGAGAGCACGGCCGGTGA
AAGAAGCAAGGCCTGGAGTGACGGACACATTAACGGTGAACCCTTCGGCC
ACCGCCAGGGCGGCGAAGTATTTCGCTCCCGCCGCCACCGCCGCCGGCCC
ATCCTCACGGAAAAGCATCCCACCAACCCTTCCCCCGTCCTACTCCTCTT
CGGTGGTCACCGCCGCTACGCGGGCACAAGTTGACGAAAGCAGCAAGCCC
TTGAACTCCGCTCCTTCCCCTTCCCCCCCGATTACCCTCAAACTACCCCC
CGCCCCCGCCGCCGCCGGCCATCACCAGGGCGTCACCGACACGGCCACCC
TCAAGGAACGCGCCCTGCTCGAGGCCAACCCGGCGCCGCCGTCCGCTTCG
TCTTCGACGACCGGAGCCGCTCCCGCGCCTGCGCCTTCGGCGGTTGTTGC
ATCCACGACCCCTTCCAACGGTGGTGCCTCCGCTCCAACCGCCGAGGACG
CGGTGGTTGCTGCCGGAGGGGGCACGCAGACCGGAAATGTGCCGGAGGCG
GCATCGGTGGAGGAGGCCGCCCCGGGGCCCTCCCCCTCATCATGACCAGA
GATTCTACCATCAGGTCGTGACTGATAACGGGGGGGGATGAGGGGGCGTT
CTGATCAGGCGCGGTTTCTCGCTCGCGTTCACTGCAAGTTACATGTTATG
TGGGTTTTAAAGGTGCGCGGGGCAGCACGTTTGCGAAGCTGTGACTGCTG
GGCGTCCCCCCCAACCCTTTTTATTCCGCGCTTTTCGCTGGCGTTTTGCG
AGGGGGGGGGGGGGCAACTGGGGCGTTTATTAGTTTTCCTTGTCGGCAGA
CTTTGCTGATATCGATATTTCATGTGTATATATCCACGCCCCTGCTGCAG
TGGTGGAGAGGACCACCGTCGACGTCGAATTACGATGCCTCGCGACGCGT
AGCCCCTAAAGGTGTTGCGCCGGGGGCGAAAGGGGGTGAGGCCAAAGTTT
GTAGAAGGTGGTCGGCTGCTCGTTTTTGTCATGTCTGCAGTGGTCAATTT
TTTCGGGTCGGTCTTGTTGGATCGACCAATTATTCGTGGATAGTTGTTTT
TTGGCTGTCGTCGTCCACATGTAGGTGCCGCGCCTGCTAGAGTCGGCTCG
TTGTAAAGCCACCCACGATAAGGTTTTAGAAAAATGAAATCATCGAGAAA
ATGATAAGCGTGTATCGTGGGGGGCACGGTTGCATTTTGGTTTGTTGCCT
CTCGGGGGCAGGGCGTATTTGTAGACAGGTGGACGCGGTGTGTGTGGGGG
GGCATCCGGTTCCTGCGTGTTTCGGTTCGAAAGTGCTCGCCGAAAGTTGT
AGGGGCGTTCAGGTCACACAAAGGGTTTTGACGTCGGAGCGGTTGCGGCC
GACTGGGGCCTCCAGCGGCAGTCGAGATACGTTCAATAACACTTGTGCTT
TAGGGATTGCACGTGATTGAAGTTTTTCGGGGAATGTATTCATTCCTGCA
GTGGGGGAGAGGTGGAGTATCCTGGATAGTTTTTTGTGTGTTTGATAGTT
TTTGGCGCGATTTGGTTCTCCCCCCTCCCTGCCCCCTCACACACAATTAT
GTCCATTCACACACAGAAACGAACGACTCTGACTTCGTTTTTGCTTGGGC
CGATGGGTGACCTTGAGCCGGTTGTCTCCTGTGTTTTTTCCTAGCGAGAG
TTGTTCCTTTAGACCGACGCAGGCGCGACTGGCCGACAAGTCGTCGCCGT
GGCTCGTGTACTTCGATTGATCTGCAGATACATGCGATAGATGCGTGCGT
AGGTCGCTGCTGCTAAGAGTCTATGTAGACGCCCGCGGCGAGAGCATCTG
CAAGTGTGGCCCGTTCTTGTCTGTTGTTCCGGGTGAAGTCGAGGGTTTTC
GCTGGTGAAGCTCTCTCGTCTTTTCGTGCTTCAGAGGCCGCCAAAGTTGA
AAAGACGTCGTCGTCATTGTCGTCATTTTTTTTTTTTCGGTGCCCGGGTG
TAGAGGAGGCTGGCTGCATCAAAGTGCGCTCTAGAATGCGCGCATGCTTG
TGGGAAGGCAAGGGCGGGGGGGTCGAGAATGTGAGACGGCGGGAGGGGGG
GTCTGCGTGAACGTTGGCGTCTTCCTTCCCGGTGTGATGTCTTGTTCCTG
TGTATTTATATCTTGTTTTTGTCTTCTCATAAGTGGCACGTTTGTTTTCC
GCGCTTCTGGCGCGCGTGTACGCAAGTGTTGTCTTGACCTTGGGCAGCTG
CGTACATACCACGGTTTGGTTCCACATACTGACTGTCGAGGCCAGCGCCG
CTGGACGAAGAAAGCTTGACGCTCGGCGAACGGTGTTTTCTGTGATGTTA
GGTTGCTGCACCAACCGTGCACGAGGGGAGATGGCGCGCAGGGCTCCCCA
CGTCATTTTTCCATGAGAGTTTTGATGTTGGACGCACATACCAAATACCA
AATATACCTGTTTGTTGTTGCGCGATGGATACGCGAGGCGAGATGAAGCG
GTGCGTGTTTCTTCGTCCCTCTCCAAGTATTGCGTGTAGGTGGGAGTGGG
GCTTGTTCCATGCAAAGGCTGATTCAGGGTGAAAGGAGTGGTATCAAGGC
GTGGAAGGTATCGCGTGCTTGGGGCTCGCCGAATTTTGTGCTTCCTTTGT
CGCTTGGAGAACGCCCGTTGATCAACCGCGATTTTTTTTGTCGTGTGTTC
AGTTTCTTCCTTCCGTGTTGGCGACTTCATGTTCGCTTTAGAAGTGGGGA
CCGCACTGGGAGGCAGTTTTTGGTGCGTTTCTTGCCAGTTTTTTTTTTTG
GGGGGGGGGTGACAACGGTATCTGTCATACGCGTGATCGGCCGGAAGTTT
GCCTTCACAGCGCTCGGACGTGCGTTGTTGGTAGTTTTTTTACATCACGG
TGGCGTATGTGAAGTGTTGGTTCTTGTCGGCTAATACTGTGTTTTTTTGT
GTCTTGCTCGACTCTCCGGCGGCGAGGTGTGGTCTGGTTGGTTTGTTGGG
GCCGCCTTTAGTGTCGCAGCAGTAGTATCACGGTACACAGCACCAACCAG
TCGACTATTGGCTTTCTCTACGCGTATGATTTCTTGTGTCAGCGCAAGGG
AAAGCGGTAACTGCTGCTGCTGACCTTTTGCGCTCGTGGGGTGCCCCAGG
AGTGCATGTCGGGGTGGGGTGGGGGGTTCAGGGGTCCGGTGCGGTCAATT
CTTCCGCCCCTTTGTGGAGTTTCGGCGAGTGCGCGGGCCTGGGTGCCTCT
TCGCAGTTAGTTGTGGTGGAAGTTCAGTCATGTATGCGCAGGTTGTGGGA
CTACTAGTACTGCAGGGACCGCCCCAACATACCACCCATGTTTGTTTTTC
TTCTGGATCATGGGGGTGGTACGCGTCGTTTTTGAGAACGTTGATCGATA
ATGAGCAATAGACATAAAAAACAAGAACATTATGAGGATGGCTACTGAAC
TGGATTCATCCCCCCCGAAAACGTTGAT
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protein sequence of EsuBft964_4a-0001

>EsuBft964_4 ID=EsuBft964_4|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MGEQLHTVGGGIENSRPPSTRARPVKEARPGVTDTLTVNPSATARAAKYF
APAATAAGPSSRKSIPPTLPPSYSSSVVTAATRAQVDESSKPLNSAPSPS
PPITLKLPPAPAAAGHHQGVTDTATLKERALLEANPAPPSASSSTTGAAP
APAPSAVVASTTPSNGGASAPTAEDAVVAAGGGTQTGNVPEAASVEEAAP
GPSPSS
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mRNA from alignment at Scaffold_604:282536..286786+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4251bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b)
CCCCACGGCGTCGATTAGGGTAAGCAACAACCGCAACGTTCGCAACCCGC GAAACTAACCTCCCTTCCTGCTCCCACCCTCACGCTTTTCAATTCCATGC GTCTCTCGGTTCACCCTTACAAGTAGAGTATTGGAGAAGATTGTGTCGGT TTTTGCTCCCGCTCACTGCAAAGAGTTGAACGCACTCGCTTGGGACTGCT GTAGTATTTACGTATTTTCTCGAACGGGCATTACGCTAGTCTTGCCGTAT TGGCACGTTTTCTAGAAGTTGTGTTTTATTGTGTGGCGAAGTAAAGTGAG AATTGGGCGTAATGGCCGGAAGGTCTTGAAGGGTGGCAACTGCACCCGTG GAGGAACACTCTTCCAGGCTATCAATGGGCGAACAACTCCACACGGTGGG TGGTGGAATCGAGAACTCTCGCCCTCCCTCGACGAGAGCACGGCCGGTGA AAGAAGCAAGGCCTGTTCTTGGGCAATCAAACACGTTCGCGCCTGCTTGC TACAGCCCATGTACGAACCCGCAGGCATATAACGGTTGCTACCGTACATG ATAATAATACCTCAGGCAGGAACCGCAGGAGGGGGTCCAACCCCCCCTCC TATGTGACCCCGGTCGGGTCGTCTAGCTGGTAGAAGTGGAGGATAGGGGC CAGAGGGGCAGACGACAGAGTCCAATGATTGGAGAAAAAATAAATATATA TATATACATATATAAAGGTGGAAAGGTGATGCTACCTTCGGCTCCACTTT ACCTGGATCTTACAGTATTCCCCTGTCTTTGTTCCGTTTTTTTTTCTGTT GTGGTGTTGCCGAAAAAAACTCGTTTTTTTTTCTCAGGGAGTGACGGACA CATTAACGGTGAACCCTTCGGCCACCGCCAGGGCGGCGAAGTATTTCGCT CCCGCCGCCACCGCCGCCGGCCCATCCTCACGGAAAAGCATCCCACCAAC CCTTCCCCCGTCCTACTCCTCTTCGGTGGTCACCGCCGCTACGCGGGCAC AAGTTGACGAAAGCAGCAAGCCCTTGAACTCCGCTCCTTCCCCTTCCCCC CCGATTACCCTCAAACTACCCCCCGCCCCCGCCGCCGCCGGCCATCACCA GGGCGTCACCGACACGGCCACCCTCAAGGAACGCGCCCTGCTCGAGGCCA ACCCGGCGCCGCCGTCCGCTTCGTCTTCGACGACCGGAGCCGCTCCCGCG CCTGCGCCTTCGGCGGTTGTTGCATCCACGACCCCTTCCAACGGTGGTGC CTCCGCTCCAACCGCCGAGGACGCGGTGGTTGCTGCCGGAGGGGGCACGC AGACCGGAAATGTGCCGGAGGCGGCATCGGTGGAGGAGGCCGCCCCGGGG CCCTCCCCCTCATCATGACCAGAGATTCTACCATCAGGTCGTGACTGATA ACGGGGGGGGATGAGGGGGCGTTCTGATCAGGCGCGGTTTCTCGCTCGCG TTCACTGCAAGTTACATGTTATGTGGGTTTTAAAGGTGCGCGGGGCAGCA CGTTTGCGAAGCTGTGACTGCTGGGCGTCCCCCCCAACCCTTTTTATTCC GCGCTTTTCGCTGGCGTTTTGCGAGGGGGGGGGGGGGCAACTGGGGCGTT TATTAGTTTTCCTTGTCGGCAGACTTTGCTGATATCGATATTTCATGTGT ATATATCCACGCCCCTGCTGCAGTGGTGGAGAGGACCACCGTCGACGTCG AATTACGATGCCTCGCGACGCGTAGCCCCTAAAGGTGTTGCGCCGGGGGC GAAAGGGGGTGAGGCCAAAGTTTGTAGAAGGTGGTCGGCTGCTCGTTTTT GTCATGTCTGCAGTGGTCAATTTTTTCGGGTCGGTCTTGTTGGATCGACC AATTATTCGTGGATAGTTGTTTTTTGGCTGTCGTCGTCCACATGTAGGTG CCGCGCCTGCTAGAGTCGGCTCGTTGTAAAGCCACCCACGATAAGGTTTT AGAAAAATGAAATCATCGAGAAAATGATAAGCGTGTATCGTGGGGGGCAC GGTTGCATTTTGGTTTGTTGCCTCTCGGGGGCAGGGCGTATTTGTAGACA GGTGGACGCGGTGTGTGTGGGGGGGCATCCGGTTCCTGCGTGTTTCGGTT CGAAAGTGCTCGCCGAAAGTTGTAGGGGCGTTCAGGTCACACAAAGGGTT TTGACGTCGGAGCGGTTGCGGCCGACTGGGGCCTCCAGCGGCAGTCGAGA TACGTTCAATAACACTTGTGCTTTAGGGATTGCACGTGATTGAAGTTTTT CGGGGAATGTATTCATTCCTGCAGTGGGGGAGAGGTGGAGTATCCTGGAT AGTTTTTTGTGTGTTTGATAGTTTTTGGCGCGATTTGGTTCTCCCCCCTC CCTGCCCCCTCACACACAATTATGTCCATTCACACACAGAAACGAACGAC TCTGACTTCGTTTTTGCTTGGGCCGATGGGTGACCTTGAGCCGGTTGTCT CCTGTGTTTTTTCCTAGCGAGAGTTGTTCCTTTAGACCGACGCAGGCGCG ACTGGCCGACAAGTCGTCGCCGTGGCTCGTGTACTTCGATTGATCTGCAG ATACATGCGATAGATGCGTGCGTAGGTCGCTGCTGCTAAGAGTCTATGTA GACGCCCGCGGCGAGAGCATCTGCAAGTGTGGCCCGTTCTTGTCTGTTGT TCCGGGTGAAGTCGAGGGTTTTCGCTGGTGAAGCTCTCTCGTCTTTTCGT GCTTCAGAGGCCGCCAAAGTTGAAAAGACGTCGTCGTCATTGTCGTCATT TTTTTTTTTTCGGTGCCCGGGTGTAGAGGAGGCTGGCTGCATCAAAGTGC GCTCTAGAATGCGCGCATGCTTGTGGGAAGGCAAGGGCGGGGGGGTCGAG AATGTGAGACGGCGGGAGGGGGGGTCTGCGTGAACGTTGGCGTCTTCCTT CCCGGTGTGATGTCTTGTTCCTGTGTATTTATATCTTGTTTTTGTCTTCT CATAAGTGGCACGTTTGTTTTCCGCGCTTCTGGCGCGCGTGTACGCAAGT GTTGTCTTGACCTTGGGCAGCTGCGTACATACCACGGTTTGGTTCCACAT ACTGACTGTCGAGGCCAGCGCCGCTGGACGAAGAAAGCTTGACGCTCGGC GAACGGTGTTTTCTGTGATGTTAGGTTGCTGCACCAACCGTGCACGAGGG GAGATGGCGCGCAGGGCTCCCCACGTCATTTTTCCATGAGAGTTTTGATG TTGGACGCACATACCAAATACCAAATATACCTGTTTGTTGTTGCGCGATG GATACGCGAGGCGAGATGAAGCGGTGCGTGTTTCTTCGTCCCTCTCCAAG TATTGCGTGTAGGTGGGAGTGGGGCTTGTTCCATGCAAAGGCTGATTCAG GGTGAAAGGAGTGGTATCAAGGCGTGGAAGGTATCGCGTGCTTGGGGCTC GCCGAATTTTGTGCTTCCTTTGTCGCTTGGAGAACGCCCGTTGATCAACC GCGATTTTTTTTGTCGTGTGTTCAGTTTCTTCCTTCCGTGTTGGCGACTT CATGTTCGCTTTAGAAGTGGGGACCGCACTGGGAGGCAGTTTTTGGTGCG TTTCTTGCCAGTTTTTTTTTTTGGGGGGGGGGTGACAACGGTATCTGTCA TACGCGTGATCGGCCGGAAGTTTGCCTTCACAGCGCTCGGACGTGCGTTG TTGGTAGTTTTTTTACATCACGGTGGCGTATGTGAAGTGTTGGTTCTTGT CGGCTAATACTGTGTTTTTTTGTGTCTTGCTCGACTCTCCGGCGGCGAGG TGTGGTCTGGTTGGTTTGTTGGGGCCGCCTTTAGTGTCGCAGCAGTAGTA TCACGGTACACAGCACCAACCAGTCGACTATTGGCTTTCTCTACGCGTAT GATTTCTTGTGTCAGCGCAAGGGAAAGCGGTAACTGCTGCTGCTGACCTT TTGCGCTCGTGGGGTGCCCCAGGAGTGCATGTCGGGGTGGGGTGGGGGGT TCAGGGGTCCGGTGCGGTCAATTCTTCCGCCCCTTTGTGGAGTTTCGGCG AGTGCGCGGGCCTGGGTGCCTCTTCGCAGTTAGTTGTGGTGGAAGTTCAG TCATGTATGCGCAGGTTGTGGGACTACTAGTACTGCAGGGACCGCCCCAA CATACCACCCATGTTTGTTTTTCTTCTGGATCATGGGGGTGGTACGCGTC GTTTTTGAGAACGTTGATCGATAATGAGCAATAGACATAAAAAACAAGAA CATTATGAGGATGGCTACTGAACTGGATTCATCCCCCCCGAAAACGTTGA T
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Coding sequence (CDS) from alignment at Scaffold_604:282536..286786+

>EsuBft964_4a-0001 ID=EsuBft964_4a-0001|Name=EsuBft964_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_604:282536..286786+ (Ectocarpus subulatus male Bft15b)
ATGGGCGAACAACTCCACACGGTGGGTGGTGGAATCGAGAACTCTCGCCC
TCCCTCGACGAGAGCACGGCCGGTGAAAGAAGCAAGGCCTGGAGTGACGG
ACACATTAACGGTGAACCCTTCGGCCACCGCCAGGGCGGCGAAGTATTTC
GCTCCCGCCGCCACCGCCGCCGGCCCATCCTCACGGAAAAGCATCCCACC
AACCCTTCCCCCGTCCTACTCCTCTTCGGTGGTCACCGCCGCTACGCGGG
CACAAGTTGACGAAAGCAGCAAGCCCTTGAACTCCGCTCCTTCCCCTTCC
CCCCCGATTACCCTCAAACTACCCCCCGCCCCCGCCGCCGCCGGCCATCA
CCAGGGCGTCACCGACACGGCCACCCTCAAGGAACGCGCCCTGCTCGAGG
CCAACCCGGCGCCGCCGTCCGCTTCGTCTTCGACGACCGGAGCCGCTCCC
GCGCCTGCGCCTTCGGCGGTTGTTGCATCCACGACCCCTTCCAACGGTGG
TGCCTCCGCTCCAACCGCCGAGGACGCGGTGGTTGCTGCCGGAGGGGGCA
CGCAGACCGGAAATGTGCCGGAGGCGGCATCGGTGGAGGAGGCCGCCCCG
GGGCCCTCCCCCTCATCATGA
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