EsuBft964_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft964_2a-0001
Unique NameEsuBft964_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_604contigScaffold_604:270747..271791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft964_2
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl33208|Metazoa
Length1045
Hectar predicted targeting categoryother localisation
Evalue6.89e-22
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-13
Date creation2016-06-13
DescriptionRibonuclease H protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2aEsuBft964_2aEctocarpus subulatus male Bft15bgeneScaffold_604 270747..271791 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2a-0001-exonEsuBft964_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_604 270747..271791 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2a-0001-exonagat-three_prime_utr-23558Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_604 270747..271129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2a-0001-cdsEsuBft964_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_604 271130..271612 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2a-0001-exonagat-five_prime_utr-15325Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_604 271613..271791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft964_2a-0001EsuBft964_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_604 271130..271612 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1045bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTACAAGAAGGGTGACCGGTCCAAGTGTAACAACTACAGGGGGATT
TCGCTAGTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCCCCTTCTGCGAAGCCAATATCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGGGATCCACCGTCGACATGCTGCTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGACAAAGAAAATACCGCTCTACATGTGCTTTGT
CGACTTGAACAAGGCGTGTGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAC
TTCCCCGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGACACAGGTCGTGCGACAAGGATGTGTGCTATCCC
CACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGGCGTTGTCATC
CGATTCAGCGAGGATGACGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGA
GGGGAAGACGGTAGCGGGGGGGGGGAAGGAGTACGGAGGGCAGTATGGGG
GATGCTGTATGCCGATGATGCCGGCGTCGTTTCGAGGTCTGCAGAAGGAC
TGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTA
ACGGTGTCGGAGAAGACAGAGACGCTCCTGATGCGCGCGAAGGACAAGTC
GATTACAACATCACAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCG
CGGGACAGAAATACGCCCAGACGACCTAGTTACGGTACCTCGGTGGCCTC
GTCAACGAACATGACGACCTCACCAGGGAGATCAACTACAGGAGGAGCAG
AGGAGCGTGGGCGTGCCTCAGCCGATATGGCCGGGAGCTCTTTGTTCGAC
AGACCGCAAGCGCCATTCCGACTTAAGATCCGCCTGCTCAAGGCGGAGGC
GATGGAGGCACCACTGCTGTACGGCTGCATGACATGGTCACCGCT
back to top

protein sequence of EsuBft964_2a-0001

>EsuBft964_2 ID=EsuBft964_2|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=160bp
MLLVVRRLQELGRTKKIPLYMCFVDLNKACDSVDREMLWKVLARAGIPAK
LIEVIRHFPDGMRARVRMDDGELSDWFFVTQVVRQGCVLSPLLFNIFFAE
VLEGVVIRFSEDDVVLRSLVCLEEGKTVAGGGKEYGGQYGGCCMPMMPAS
FRGLQKDWRE
back to top

mRNA from alignment at Scaffold_604:270747..271791-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1045bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAAGTGTAACAACTACAGGGGGATT
TCGCTAGTATCTCACGTAGGCAAGGTCCCCATCAAGATCATCACCAACCG
TCTAAGCCCCTTCTGCGAAGCCAATATCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGGGATCCACCGTCGACATGCTGCTCGTCGTGCGCCGC
CTCCAGGAGCTGGGGCGGACAAAGAAAATACCGCTCTACATGTGCTTTGT
CGACTTGAACAAGGCGTGTGATTCGGTGGACCGAGAGATGCTATGGAAGG
TGCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAC
TTCCCCGATGGAATGCGGGCCCGTGTGCGCATGGACGACGGAGAACTATC
GGACTGGTTCTTCGTGACACAGGTCGTGCGACAAGGATGTGTGCTATCCC
CACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGGCGTTGTCATC
CGATTCAGCGAGGATGACGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGA
GGGGAAGACGGTAGCGGGGGGGGGGAAGGAGTACGGAGGGCAGTATGGGG
GATGCTGTATGCCGATGATGCCGGCGTCGTTTCGAGGTCTGCAGAAGGAC
TGGCGAGAATGATGACCATCATCGTTGAGGTGTTCGGGGAGTTCGGGCTA
ACGGTGTCGGAGAAGACAGAGACGCTCCTGATGCGCGCGAAGGACAAGTC
GATTACAACATCACAGCCCGCCCCGCCTCCACCGCTGACCATCGAAGCCG
CGGGACAGAAATACGCCCAGACGACCTAGTTACGGTACCTCGGTGGCCTC
GTCAACGAACATGACGACCTCACCAGGGAGATCAACTACAGGAGGAGCAG
AGGAGCGTGGGCGTGCCTCAGCCGATATGGCCGGGAGCTCTTTGTTCGAC
AGACCGCAAGCGCCATTCCGACTTAAGATCCGCCTGCTCAAGGCGGAGGC
GATGGAGGCACCACTGCTGTACGGCTGCATGACATGGTCACCGCT
back to top

Coding sequence (CDS) from alignment at Scaffold_604:270747..271791-

>EsuBft964_2a-0001 ID=EsuBft964_2a-0001|Name=EsuBft964_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=483bp|location=Sequence derived from alignment at Scaffold_604:270747..271791- (Ectocarpus subulatus male Bft15b)
ATGCTGCTCGTCGTGCGCCGCCTCCAGGAGCTGGGGCGGACAAAGAAAAT
ACCGCTCTACATGTGCTTTGTCGACTTGAACAAGGCGTGTGATTCGGTGG
ACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCGCGAAG
CTGATCGAAGTCATCCGCCACTTCCCCGATGGAATGCGGGCCCGTGTGCG
CATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGTCGTGC
GACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAG
GTCCTCGAGGGCGTTGTCATCCGATTCAGCGAGGATGACGTTGTTCTGCG
GAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGTAGCGGGGGGGGGGAAGG
AGTACGGAGGGCAGTATGGGGGATGCTGTATGCCGATGATGCCGGCGTCG
TTTCGAGGTCTGCAGAAGGACTGGCGAGAATGA
back to top