EsuBft963_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft963_2a-0001
Unique NameEsuBft963_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_478contigScaffold_478:73576..74160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LNN8
ProteomeIdEsuBft963_2
Protein domainsIPR007783
Ownerapollo_admin@sb-roscoff.fr
Noteeukaryotic translation initiation factor 3 subunit d os:homo sapiens gn:eif3d pe:1 sv:1 [Automatic annotation]
Nb exon1
Max annot lvl2759|Eukaryota
Length585
Hectar predicted targeting categoryother localisation
Evalue1.39e-100
EggNOG OGsKOG2479@1|root,KOG2479@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameEIF3D
KEGG koko:K02987,ko:K03251,ko:K10136
KEGG Pathwayko03010,ko03013,ko04115,map03010,map03013,map04115
KEGG ModuleM00177,M00179
GOsGO:0000339,GO:0001732,GO:0002181,GO:0002183,GO:0002191,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005813,GO:0005815,GO:0005829,GO:0005852,GO:0005856,GO:0005911,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006470,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006913,GO:0007154,GO:0007165,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009416,GO:0009506,GO:0009628,GO:0009639,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010017,GO:0010019,GO:0010035,GO:0010038,GO:0010380,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0012505,GO:0015630,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016282,GO:0016311,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016791,GO:0019080,GO:0019081,GO:0019222,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030054,GO:0030176,GO:0031090,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032879,GO:0032880,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0042578,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045727,GO:0046686,GO:0046906,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051193,GO:0051195,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055044,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070993,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071540,GO:0071541,GO:0071704,GO:0071826,GO:0071840,GO:0075522,GO:0075525,GO:0080090,GO:0090056,GO:0097159,GO:0098808,GO:0098827,GO:0104004,GO:0140096,GO:1900180,GO:1900182,GO:1901363,GO:1901401,GO:1901402,GO:1901463,GO:1901464,GO:1901564,GO:1901566,GO:1901576,GO:1902325,GO:1902415,GO:1902416,GO:1903827,GO:1903829,GO:1905214,GO:1905216,GO:1990904,GO:2000112
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03012
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
GO0006413
GO0001591
GO0005852
GO0005622
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft963_2aEsuBft963_2aEctocarpus subulatus male Bft15bgeneScaffold_478 73576..74160 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_2a-0001-exonEsuBft963_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_478 73576..74160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_2a-0001-cdsEsuBft963_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_478 73576..74160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft963_2a-0001EsuBft963_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_478 73576..74160 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft963_2a-0001 ID=EsuBft963_2a-0001|Name=EsuBft963_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=585bp|location=Sequence derived from alignment at Scaffold_478:73576..74160- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGAGAGGACATGGGTACGTTCACGACGCCGGTCGTGCATATCAA
TGCCGAGGGGGGCTGGGGGCCAGACGCAAGTGCGTTGCCTGAGCAGTTCC
TGGACGTCCCGTACGCGCCGTTCGGCAAGAGCGATCGCATCGGAAGGGCG
GCCGACTTCACGGCCCCCGTGTACTTCCAGAACCGGAGCTTCCGTAACCG
ACGTGGGGAGGATAACGCCGTCAACGCGGAGTTCCAGTACAAATACGACA
ATGAGGAGGACGAGGCGTTCCGCCTGGTCAACACCACGAAGTCCAAGCAG
AACCGGTTCGGACCGCGTAACCGCTGGAACAACAACCGTGGCCGGGGCCG
CGGTCACGGCGGCCGGTTCGGCGGCCGATTCGGGGAGACTACGCGGGGAC
AGCCGGCGGCGAGTCAGGGGGGACAAGCCGGGAAGGACCGCACTGGAGGT
CGCTTCATCGCCGTGCCCAAGAACAAGTGGGAGCGTCAGCGCTTGGCGAG
GGGTCCGTCCCCGGAGATCCAAGCCGTAAACCCCAAAAATGTGATCCAGC
CGGGCGCAAACGAGCTGAGCGTATATCTTTTATAG
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protein sequence of EsuBft963_2a-0001

>EsuBft963_2 ID=EsuBft963_2|Name=EsuBft963_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MEREDMGTFTTPVVHINAEGGWGPDASALPEQFLDVPYAPFGKSDRIGRA
ADFTAPVYFQNRSFRNRRGEDNAVNAEFQYKYDNEEDEAFRLVNTTKSKQ
NRFGPRNRWNNNRGRGRGHGGRFGGRFGETTRGQPAASQGGQAGKDRTGG
RFIAVPKNKWERQRLARGPSPEIQAVNPKNVIQPGANELSVYLL
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mRNA from alignment at Scaffold_478:73576..74160-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft963_2a-0001 ID=EsuBft963_2a-0001|Name=EsuBft963_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=585bp|location=Sequence derived from alignment at Scaffold_478:73576..74160- (Ectocarpus subulatus male Bft15b)
ATGGAGCGAGAGGACATGGGTACGTTCACGACGCCGGTCGTGCATATCAA
TGCCGAGGGGGGCTGGGGGCCAGACGCAAGTGCGTTGCCTGAGCAGTTCC
TGGACGTCCCGTACGCGCCGTTCGGCAAGAGCGATCGCATCGGAAGGGCG
GCCGACTTCACGGCCCCCGTGTACTTCCAGAACCGGAGCTTCCGTAACCG
ACGTGGGGAGGATAACGCCGTCAACGCGGAGTTCCAGTACAAATACGACA
ATGAGGAGGACGAGGCGTTCCGCCTGGTCAACACCACGAAGTCCAAGCAG
AACCGGTTCGGACCGCGTAACCGCTGGAACAACAACCGTGGCCGGGGCCG
CGGTCACGGCGGCCGGTTCGGCGGCCGATTCGGGGAGACTACGCGGGGAC
AGCCGGCGGCGAGTCAGGGGGGACAAGCCGGGAAGGACCGCACTGGAGGT
CGCTTCATCGCCGTGCCCAAGAACAAGTGGGAGCGTCAGCGCTTGGCGAG
GGGTCCGTCCCCGGAGATCCAAGCCGTAAACCCCAAAAATGTGATCCAGC
CGGGCGCAAACGAGCTGAGCGTATATCTTTTATAG
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Coding sequence (CDS) from alignment at Scaffold_478:73576..74160-

>EsuBft963_2a-0001 ID=EsuBft963_2a-0001|Name=EsuBft963_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_478:73576..74160- (Ectocarpus subulatus male Bft15b)
ATGGAGCGAGAGGACATGGGTACGTTCACGACGCCGGTCGTGCATATCAA
TGCCGAGGGGGGCTGGGGGCCAGACGCAAGTGCGTTGCCTGAGCAGTTCC
TGGACGTCCCGTACGCGCCGTTCGGCAAGAGCGATCGCATCGGAAGGGCG
GCCGACTTCACGGCCCCCGTGTACTTCCAGAACCGGAGCTTCCGTAACCG
ACGTGGGGAGGATAACGCCGTCAACGCGGAGTTCCAGTACAAATACGACA
ATGAGGAGGACGAGGCGTTCCGCCTGGTCAACACCACGAAGTCCAAGCAG
AACCGGTTCGGACCGCGTAACCGCTGGAACAACAACCGTGGCCGGGGCCG
CGGTCACGGCGGCCGGTTCGGCGGCCGATTCGGGGAGACTACGCGGGGAC
AGCCGGCGGCGAGTCAGGGGGGACAAGCCGGGAAGGACCGCACTGGAGGT
CGCTTCATCGCCGTGCCCAAGAACAAGTGGGAGCGTCAGCGCTTGGCGAG
GGGTCCGTCCCCGGAGATCCAAGCCGTAAACCCCAAAAATGTGATCCAGC
CGGGCGCAAACGAGCTGAGCGTATATCTTTTATAG
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