EsuBft962_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft962_7a-0001
Unique Name	EsuBft962_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_230	contig	Scaffold_230:717..4263 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft962_7
Owner	apollo_admin@sb-roscoff.fr
Nb exon	6
Length	213
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft962_7a	EsuBft962_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_230 717..4263 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft962_7a-0001	EsuBft962_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_230 717..4263 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft962_7a-0001-exon	agat-exon-56709	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 717..789 -
EsuBft962_7a-0001-exon	agat-exon-56707	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 835..1112 -
EsuBft962_7a-0001-exon	agat-exon-56711	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 1413..1850 -
EsuBft962_7a-0001-exon	agat-exon-56708	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 2280..2652 -
EsuBft962_7a-0001-exon	EsuBft962_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 2871..3125 -
EsuBft962_7a-0001-exon	agat-exon-56710	Ectocarpus subulatus male Bft15b	exon	Scaffold_230 3545..4263 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft962_7a-0001-cds	EsuBft962_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_230 717..789 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_230:717..4263-
coding sequence from alignment at Scaffold_230:717..4263-

spliced messenger RNA

>EsuBft962_7a-0001 ID=EsuBft962_7a-0001|Name=EsuBft962_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2136bp|location=Sequence derived from alignment at Scaffold_230:717..4263- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATAGCGGAATAGACATCGGACATGCCCAGGGTCCCCCGGTTTC
TTTGCGTCTGGCGACGACGTGCGGTGCGGAGATGCCTATTTCCCCGGCCA
ATGTATCTGCATCGAGCATCGCTTCTCACCCGGGTCCGCTCATGGGCGTT
GGCGGAGCAGACATGAGAGGGGCGCCGGGGTCCTCGGGTGGTTTTCCTCG
GGCGACGATGTGTGGTGCGGGGATGCCGCCTCTGTCCCCGGCCAATGTGT
CTGCACCCAGCATCGCCCCTGGCCCGAGGAGGGCTCAGCCGCGTCCGGCC
CTTGCAATGCCACAGCTTCTTCCGGTACCTCAGACCACAGTTAGTAGCGG
AGGGGTGGGGGGGAAGAGAGCAGCCGCGGAAACACTAGCACATGTGGACC
TCATTCCAACCACTGATCATGACAGCGACAATCAGCGACGGACTGACGGC
CCCGGCACATCCGCCAGCACATCGACGGGGGGGAGGCGAAAGGGGCAGCT
GGCTCAACAAGCCAGCACCTGCCACGGGTGTAGGATCAATAAACCCACGG
GCAACGTTAGGCATGCTTGCCAGGGTGGGGACGAGGGTGGTGAGGCGCGG
GGATGCAACTATTGGGTGCGCCAGAAGTGTATGGGAAGATGGATGCAAGC
GTCTGGACAGCCGAGAGGATTCTGGTGCTGCCTACATTCGGGTAGGGAGT
GGTGCCCGTGCGCCGAGAGGATTTCCACGAAGAGGAGCAAGGCAGTTTCG
GTGGTGGATCGATCCAGGCTAGCGCAGAATCGTCAGGAGAGCACAGATGT
GTACGAGTTCCCGACAACAACCTCATCTCCCACGGCCGCAACGACAGCTG
CTTCTCCCACACCACCCTCTGGACCGGGCACGACTTACTCCGTGTGCACA
TCGAACGGCCAGAACCGCGTCGCCGTGATCAAGGCTGGTGCCCGGTTCTT
GTGCTCACGGCCCGATTGCAGACGAATCGAGGGTCTCAGCTCCGCAGCGA
CTGGTGACACGGCCTCTGCGCTGCCATCTCGCTGCGCTCATGCAGAAGTC
GTCATCGAGGCAGAGAAAACATCTATGCCGATGCCCAAAGCAGATGCTCT
TCTCTCGGCGGGCGATTTTGAGAGCGCGTTGGATAAAGTTCCGGCGGGAA
CTTTCAACCAACGCACGGTGGCATCCATGCGCGCACGCGCTGACCAGGCG
GCGAAAGAAGGCCTGCCGTTGCTTGTCCGCGTCGGGAACACGAAGTACTT
TGCGGTGAGGGACGGCCAGAAGTTCAACCGCACCGTGATTGGAGAGTGGG
GGCACGTGAAGTACGACCAGCGCGGGAGCAAAGTATTCCAGTGCAAGGCG
AGTGACGGGAGCCCGTGCAGCGACGGTGCGTCAAGGAAAAGCACCGGCCG
GTGTATTCACGCCGCCATCGTTGCGGTGTACATTTACGACCGGTACAAGT
CCGGCGTTGCGGGGGAAGAGCTGGAGCTGGAGCGTGATGGCGACATGGAC
GGCATGGAGTTCGGGCCAGAGGGGGAGGGGTGGGGGGCTGAAGGCACCAT
CGGTGGTGACACGGGGTTCGCATCGTACACTCAGGGTGAAAATCCTCTGT
ATTTCGGAGAAAAAATGGCTCAGCTCAGAGTGATCACGGCTGTCTACAAG
TTTCCCGTGGCTGAGCCTGAGCTCAAGCCAGGAACGTACGGGCGCAAAAG
GATTCACGTCAACGCATGCTTTTGCACAGGTTGCGGACAGAAGTACCAAG
AACTTCCCGACGGCGAAGCAACCCTTCTCGGCCAGCGGACAAACGGGGGG
GCAGAACTGCGAGTGGTGAAGGTCGAGCGGAAGGGATGCAAGAGGTGCAA
GCTGATCGGATGGGCGGGCGACGATATCTATGCGGACGGCGTATTCAACT
ACAACAACAATGTTGTGCTTGCACTTTCTCTCCTGTACACCATCCGTAGG
GCGGTCAGTGCCGATACTCCTGTATCAACCTGGGTGAGGACCTTCCTCAG
GCCCCTGCTGGATGACCTGACATGGCTGGACGCCTCGAACGAAAACCGCG
CATTGGCTTCACGGAAGCTGAGTTTCTCGAGCGTTCTCCTGCGGGGACAC
CTGTCCGGCAAACAGAACTTAGAGGTCGGCTTGTAG

protein sequence of EsuBft962_7a-0001

>EsuBft962_7 ID=EsuBft962_7|Name=EsuBft962_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=711bp
MGDSGIDIGHAQGPPVSLRLATTCGAEMPISPANVSASSIASHPGPLMGV
GGADMRGAPGSSGGFPRATMCGAGMPPLSPANVSAPSIAPGPRRAQPRPA
LAMPQLLPVPQTTVSSGGVGGKRAAAETLAHVDLIPTTDHDSDNQRRTDG
PGTSASTSTGGRRKGQLAQQASTCHGCRINKPTGNVRHACQGGDEGGEAR
GCNYWVRQKCMGRWMQASGQPRGFWCCLHSGREWCPCAERISTKRSKAVS
VVDRSRLAQNRQESTDVYEFPTTTSSPTAATTAASPTPPSGPGTTYSVCT
SNGQNRVAVIKAGARFLCSRPDCRRIEGLSSAATGDTASALPSRCAHAEV
VIEAEKTSMPMPKADALLSAGDFESALDKVPAGTFNQRTVASMRARADQA
AKEGLPLLVRVGNTKYFAVRDGQKFNRTVIGEWGHVKYDQRGSKVFQCKA
SDGSPCSDGASRKSTGRCIHAAIVAVYIYDRYKSGVAGEELELERDGDMD
GMEFGPEGEGWGAEGTIGGDTGFASYTQGENPLYFGEKMAQLRVITAVYK
FPVAEPELKPGTYGRKRIHVNACFCTGCGQKYQELPDGEATLLGQRTNGG
AELRVVKVERKGCKRCKLIGWAGDDIYADGVFNYNNNVVLALSLLYTIRR
AVSADTPVSTWVRTFLRPLLDDLTWLDASNENRALASRKLSFSSVLLRGH
LSGKQNLEVGL

mRNA from alignment at Scaffold_230:717..4263-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft962_7a-0001 ID=EsuBft962_7a-0001|Name=EsuBft962_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3547bp|location=Sequence derived from alignment at Scaffold_230:717..4263- (Ectocarpus subulatus male Bft15b)
ATGGGCGATAGCGGAATAGACATCGGACATGCCCAGGGTCCCCCGGTTTC
TTTGCGTCTGGCGACGACGTGCGGTGCGGAGATGCCTATTTCCCCGGCCA
ATGTATCTGCATCGAGCATCGCTTCTCACCCGGGTCCGCTCATGGGCGTT
GGCGGAGCAGACATGAGAGGGGCGCCGGGGTCCTCGGGTGGTTTTCCTCG
GGCGACGATGTGTGGTGCGGGGATGCCGCCTCTGTCCCCGGCCAATGTGT
CTGCACCCAGCATCGCCCCTGGCCCGAGGAGGGCTCAGCCGCGTCCGGCC
CTTGCAATGCCACAGCTTCTTCCGGTACCTCAGACCACAGTTAGTAGCGG
AGGGGTGGGGGGGAAGAGAGCAGCCGCGGAAACACTAGCACATGTGGACC
TCATTCCAACCACTGATCATGACAGCGACAATCAGCGACGGACTGACGGC
CCCGGCACATCCGCCAGCACATCGACGGGGGGGAGGCGAAAGGGGCAGCT
GGCTCAACAAGCCAGCACCTGCCACGGGTGTAGGATCAATAAACCCACGG
GCAACGTTAGGCATGCTTGCCAGGGTGGGGACGAGGGTGGTGAGGCGCGG
GGATGCAACTATTGGGTGCGCCAGAAGTGTATGGGAAGATGGATGCAAGC
GTCTGGACAGCCGAGAGGATTCTGGTGCTGCCTACATTCGGGTAGGGAGT
GGTGCCCGTGCGCCGAGAGGTGAGATTACTGTTAAAAGTATTCCCCACAC
GTCCTTCATACAACACGTGGATGAGACAGCAAAATACAGATGTTGTTAGC
CCTTGATAAAGTCAGAGATATCGAGAGACCCAAGCGTTGCGAAAGCAAAA
GCCGGAAACATGCAATGATTGAAGCCCCGAACAAATATGGGGCGTACCGT
GCAAGTGAAAGGGGCTTGGGCTGTGCGAGATAAGCAAGGGAAGGACGACT
TTAAACTGGAAAGTTGCTAGTCTGGCACAGCAGTTCACCCGCGAAATGTT
TGCAATCAGCCCTAATTTTCTCTAATGCCGTGCAATGGCACAAATGGCAA
GGTTAGCGAATCGACAGTCTTGTCTGATCTATGTTTCGGTGGCCGTCGTG
CCCCCTGTCTATCACGCCTCCTGCACGGCCTAAATTAGGATTTCCACGAA
GAGGAGCAAGGCAGTTTCGGTGGTGGATCGATCCAGGCTAGCGCAGAATC
GTCAGGAGAGCACAGATGTGTACGAGTTCCCGACAACAACCTCATCTCCC
ACGGCCGCAACGACAGCTGCTTCTCCCACACCACCCTCTGGACCGGGCAC
GACTTACTCCGTGTGCACATCGAACGGCCAGAACCGCGTCGCCGTGATCA
AGGCTGGTGCCCGGTTCTTGTGCTCACGGCCCGATTGCAGACGGTGAGAG
ATAGACTCAAGAGTTTAGTTACCGTTGCTCCAAGAGTTGTTATGCTCACA
GACGGAAACATACGCCGTCGTTGATGGTATTGCTATGAGACATCTTCCTG
TTGAATGCCAAGACGAAAACTGCTTCCGCATTGCCGTCCGCCTTGGTACT
CGAACGCAAAACGGTCTCACACTCTGCCCCATCACGCCAACATTTCCGCC
GCCTTATTCAGAATCGAGGGTCTCAGCTCCGCAGCGACTGGTGACACGGC
CTCTGCGCTGCCATCTCGCTGCGCTCATGCAGAAGTCGTCATCGAGGCAG
AGAAAACATCTATGCCGATGCCCAAAGCAGATGCTCTTCTCTCGGCGGGC
GATTTTGAGAGCGCGTTGGATAAAGTTCCGGCGGGAACTTTCAACCAACG
CACGGTGGCATCCATGCGCGCACGCGCTGACCAGGCGGCGAAAGAAGGCC
TGCCGTTGCTTGTCCGCGTCGGGAACACGAAGTACTTTGCGGTGAGGGAC
GGCCAGAAGTTCAACCGCACCGTGATTGGAGAGTGGGGGCACGTGAAGTA
CGACCAGCGCGGGAGCAAAGTATTCCAGTGCAAGGTGGGTGAAGATTCAG
GATAAGTGTGCGGTGGTGTAATGGCAGCAGGGTTGAGGTGCGTCAGGGTA
CCTCGTTGTGGTTAGGTCAACCGCGGATCCGACAGGAGTGATGACGCTGT
TGCACAAAAAGAAGTTGCTTGAGGTGATGAGCCCAAGAGCGCCAACACCA
AAAAAGTATACGGCACTGATCGCGTTAATATTGCAGGGCGTGCGACGTAG
CATATACCCATTGTGACCGGACTGTGGGAATGGGCATGAAGTATGCGGGC
GTGTTTGCCGAATGATGGATCCAAACGCATCCGGAGGTTCCGACACCTTC
AGTCCTGGAGACACGACCACTCGTCCCTCCCTCCAGCGCACCTCAAGGCC
TGGCTCAATGACTGCTGTTATTTATTTTTCCTCTCGGTCTTTCTATGCTG
GCCTTTGATGAAGGCGAGTGACGGGAGCCCGTGCAGCGACGGTGCGTCAA
GGAAAAGCACCGGCCGGTGTATTCACGCCGCCATCGTTGCGGTGTACATT
TACGACCGGTACAAGTCCGGCGTTGCGGGGGAAGAGCTGGAGCTGGAGCG
TGATGGCGACATGGACGGCATGGAGTTCGGGCCAGAGGGGGAGGGGTGGG
GGGCTGAAGGCACCATCGGTGGTGACACGGGGTTCGCATCGTACACTCAG
GGTGAAAATCCTCTGTATTTCGGAGAAAAAATGGCTCAGCTCAGAGTGAT
CACGGCTGTCTACAAGTTTCCCGTGGCTGAGCCTGAGCTCAAGCCAGGAA
CGTACGGGCGCAAAAGGATTCACGTCAACGCATGCTTTTGCACAGGTTGC
GGACAGAAGTACCAAGAACTTCCCGACGGCGAAGCAACCCTTCTCGGCCA
GGTGGGTCATGGTATGGAGCAGCAGAAGTGGGGTCAACATTGATTTCCTC
TGAGAGATGTGTACGCTGCGGCAACGTGGTAGTTCCACTCTGGAAAACAA
CGGCGTGAAACAGAGGGTAGCTTGGTCAACATTGTCCATGTGATCAGCGA
GTATTTGCCTCCTTTATCATCTGTAGTTTTTTAGGGACAGGTCGTTGAAA
TCCGTCAGGGTTAGGATTGGCTTGTGCGCGGGCAGGAGTAGTGGACCGGC
AGCTACATACGACACTGACCATTCATTTGCACCTCTATATTGGTTTTGCA
GCGGACAAACGGGGGGGCAGAACTGCGAGTGGTGAAGGTCGAGCGGAAGG
GATGCAAGAGGTGCAAGCTGATCGGATGGGCGGGCGACGATATCTATGCG
GACGGCGTATTCAACTACAACAACAATGTTGTGCTTGCACTTTCTCTCCT
GTACACCATCCGTAGGGCGGTCAGTGCCGATACTCCTGTATCAACCTGGG
TGAGGACCTTCCTCAGGCCCCTGCTGGATGACCTGACATGGCTGGACGCC
TCGAACGAAAACCGCGCATTGGCTTCACGGTGAGTGATACTCGGCGATTG
TGTATTTGTTTGTTGGGGAAATAGGAAGCTGAGTTTCTCGAGCGTTCTCC
TGCGGGGACACCTGTCCGGCAAACAGAACTTAGAGGTCGGCTTGTAG

Coding sequence (CDS) from alignment at Scaffold_230:717..4263-

>EsuBft962_7a-0001 ID=EsuBft962_7a-0001|Name=EsuBft962_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2136bp|location=Sequence derived from alignment at Scaffold_230:717..4263- (Ectocarpus subulatus male Bft15b)
ATGGGCGATAGCGGAATAGACATCGGACATGCCCAGGGTCCCCCGGTTTC
TTTGCGTCTGGCGACGACGTGCGGTGCGGAGATGCCTATTTCCCCGGCCA
ATGTATCTGCATCGAGCATCGCTTCTCACCCGGGTCCGCTCATGGGCGTT
GGCGGAGCAGACATGAGAGGGGCGCCGGGGTCCTCGGGTGGTTTTCCTCG
GGCGACGATGTGTGGTGCGGGGATGCCGCCTCTGTCCCCGGCCAATGTGT
CTGCACCCAGCATCGCCCCTGGCCCGAGGAGGGCTCAGCCGCGTCCGGCC
CTTGCAATGCCACAGCTTCTTCCGGTACCTCAGACCACAGTTAGTAGCGG
AGGGGTGGGGGGGAAGAGAGCAGCCGCGGAAACACTAGCACATGTGGACC
TCATTCCAACCACTGATCATGACAGCGACAATCAGCGACGGACTGACGGC
CCCGGCACATCCGCCAGCACATCGACGGGGGGGAGGCGAAAGGGGCAGCT
GGCTCAACAAGCCAGCACCTGCCACGGGTGTAGGATCAATAAACCCACGG
GCAACGTTAGGCATGCTTGCCAGGGTGGGGACGAGGGTGGTGAGGCGCGG
GGATGCAACTATTGGGTGCGCCAGAAGTGTATGGGAAGATGGATGCAAGC
GTCTGGACAGCCGAGAGGATTCTGGTGCTGCCTACATTCGGGTAGGGAGT
GGTGCCCGTGCGCCGAGAGGATTTCCACGAAGAGGAGCAAGGCAGTTTCG
GTGGTGGATCGATCCAGGCTAGCGCAGAATCGTCAGGAGAGCACAGATGT
GTACGAGTTCCCGACAACAACCTCATCTCCCACGGCCGCAACGACAGCTG
CTTCTCCCACACCACCCTCTGGACCGGGCACGACTTACTCCGTGTGCACA
TCGAACGGCCAGAACCGCGTCGCCGTGATCAAGGCTGGTGCCCGGTTCTT
GTGCTCACGGCCCGATTGCAGACGAATCGAGGGTCTCAGCTCCGCAGCGA
CTGGTGACACGGCCTCTGCGCTGCCATCTCGCTGCGCTCATGCAGAAGTC
GTCATCGAGGCAGAGAAAACATCTATGCCGATGCCCAAAGCAGATGCTCT
TCTCTCGGCGGGCGATTTTGAGAGCGCGTTGGATAAAGTTCCGGCGGGAA
CTTTCAACCAACGCACGGTGGCATCCATGCGCGCACGCGCTGACCAGGCG
GCGAAAGAAGGCCTGCCGTTGCTTGTCCGCGTCGGGAACACGAAGTACTT
TGCGGTGAGGGACGGCCAGAAGTTCAACCGCACCGTGATTGGAGAGTGGG
GGCACGTGAAGTACGACCAGCGCGGGAGCAAAGTATTCCAGTGCAAGGCG
AGTGACGGGAGCCCGTGCAGCGACGGTGCGTCAAGGAAAAGCACCGGCCG
GTGTATTCACGCCGCCATCGTTGCGGTGTACATTTACGACCGGTACAAGT
CCGGCGTTGCGGGGGAAGAGCTGGAGCTGGAGCGTGATGGCGACATGGAC
GGCATGGAGTTCGGGCCAGAGGGGGAGGGGTGGGGGGCTGAAGGCACCAT
CGGTGGTGACACGGGGTTCGCATCGTACACTCAGGGTGAAAATCCTCTGT
ATTTCGGAGAAAAAATGGCTCAGCTCAGAGTGATCACGGCTGTCTACAAG
TTTCCCGTGGCTGAGCCTGAGCTCAAGCCAGGAACGTACGGGCGCAAAAG
GATTCACGTCAACGCATGCTTTTGCACAGGTTGCGGACAGAAGTACCAAG
AACTTCCCGACGGCGAAGCAACCCTTCTCGGCCAGCGGACAAACGGGGGG
GCAGAACTGCGAGTGGTGAAGGTCGAGCGGAAGGGATGCAAGAGGTGCAA
GCTGATCGGATGGGCGGGCGACGATATCTATGCGGACGGCGTATTCAACT
ACAACAACAATGTTGTGCTTGCACTTTCTCTCCTGTACACCATCCGTAGG
GCGGTCAGTGCCGATACTCCTGTATCAACCTGGGTGAGGACCTTCCTCAG
GCCCCTGCTGGATGACCTGACATGGCTGGACGCCTCGAACGAAAACCGCG
CATTGGCTTCACGGAAGCTGAGTTTCTCGAGCGTTCTCCTGCGGGGACAC
CTGTCCGGCAAACAGAACTTAGAGGTCGGCTTGTAG