EsuBft961_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft961_9a-0001
Unique NameEsuBft961_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:189007..192072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft961_9
Protein domainsCoil
Protein domainsIPR003034
Protein domainsSSF68906
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length159
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9aEsuBft961_9aEctocarpus subulatus male Bft15bgeneScaffold_82 189007..192072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9a-0001-exonagat-exon-89206Ectocarpus subulatus male Bft15bexonScaffold_82 189007..190406 -
EsuBft961_9a-0001-exonEsuBft961_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 191881..192072 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9a-0001-exonagat-three_prime_utr-23545Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 189007..190013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9a-0001-cdsEsuBft961_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 190014..190406 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9a-0001-exonagat-five_prime_utr-15319Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 192070..192072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_9a-0001EsuBft961_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 190014..192069 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft961_9a-0001 ID=EsuBft961_9a-0001|Name=EsuBft961_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1592bp|location=Sequence derived from alignment at Scaffold_82:189007..192072- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGATGAAGGCAGCGGCGGAGGCGGCGAGACTAGAGGGGGAAGCAGCTAA
GGCTAAGGCGGGGACGCCCGCCGCCGCGGCGGCAGGGGCGGGGGCTGGGG
CTGGGGCGGCCGCCAGGGTTAAGAACACGCAGCCGAAGAAGACGACGGCA
CGGCAGGCGGCGCTGGAGGCAAAGGAGAGAAAGGCCAGCGAGGAGGCGGA
GGCAAAGAAGGCCCAGGCCGCCGCCGCGGCCGAAAGAGAAGCGCAGAAGA
TCAAGGACATCAAGGTCGAGAAGAATATTGCCACGGCAGGGGCGGCGGCC
TCTGCAGCGAAGCCGCGGCCGCTGCCGCATGAGGGTCACCAGGCGGCCCC
CGCCAAGAAAACAACAACTCGGGCGAGAGGTCGGGCAGCAGCGCCGGCTA
CATCAAAGGCGAAAGCCGCCACTGTTGCCGGGGAGGGGGAGGGAGGGGGC
TTGTCCAAGGAGGGGTTGATGAAGTTGACGGTGAAGGATTTGAGGGAGCG
TTGTAAGGCGGCCGGGGTGCCGACATCGGGGAGGAAGGCGGACATCGTGG
ACCGACTATTAGACTCGGGCCTCGTTGCTTCGTAGTACCTAGTAGCTTGC
ATGCCATACAATACAGTACTGATTTACTATTAGAACGCAGGTCTCGGTGG
TAACAGTACCTCGTGAAATAGCGTACGTACCATACAGCGGGCGATGCTGC
TGCTGTTGTTATTGTTGTGATGCGCTGAACGGCTGTCGTTCTTAGGCGCG
TGTTGCCCTTCTCGGAACCAATGCTTCACTTGCCGGCTCTTGAGGAGACG
CTGGCTGTCCTTGACAAGCCACGAAACCGGCGCCGGACCGCTTCCGGGAT
CTGCTCTTTTGATTCTACGGCTGAGATTAATAAGTGGAATGTGAATCCAT
CTCCGCTCTTTCGCGTAACGTTTTTGGCAGTTCTAGTGACAACGCCGGTG
ATATCTCCCGTCTAGGAATCCGATAGGGTGAAGGTTAGGTGTTCTTGCTT
GGGGTTTGGTTGGTTTCCCTATCTGATTTGGTGTTGTCGGGGAACGTCCG
CAGGTAGCAGCTAGCCGAAGAGGCACCTGGTAAGTTTACAGGTTGGGGGG
GGGGGGGGGGGGGGGGGGGGTTTTNNNNNNNGGGGGGGGGGGGGGGGACG
GGCGGTCTTTTGACAAACGAGCGCTGTCGTCGGAAGGGAAAGTGGATGCG
AGCTTTTCGTGGAAAAGCATAGCATGATGCCGATGTTTTTTTTTAGATGT
TTTCTTCTTTTAGGAAAAAGGCATGCGCGGGTGTGGGCGTGGGTGTGTAG
AGAGGCCATGACAAAAACAATGAATGAAAACCGAGCCTCAGCATATATTC
GCCTACCGCTCAACAACGCAAGATTGTAGCGGTGGCGAAGGGTGTAGCGC
AGGAAGAGAGCAAGAAGCCAAGGAGATGACGCTTGCCATGTAGAAAGGAG
AGGAAGTGTGTGTTTTGTGTTGTATTTGATAGAGAAGGAGGGGGCGCGCG
GTTGCCGCCCGCGCGTTGTGTACGCTATTTCTCGCTTGGATTTTTATTGA
CGAAAAGGCAACCCGGAGCAACGAATGACGTCGGTCAGGACT
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protein sequence of EsuBft961_9a-0001

>EsuBft961_9 ID=EsuBft961_9|Name=EsuBft961_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=193bp
MKAAAEAARLEGEAAKAKAGTPAAAAAGAGAGAGAAARVKNTQPKKTTAR
QAALEAKERKASEEAEAKKAQAAAAAEREAQKIKDIKVEKNIATAGAAAS
AAKPRPLPHEGHQAAPAKKTTTRARGRAAAPATSKAKAATVAGEGEGGGL
SKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLDSGLVAS
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mRNA from alignment at Scaffold_82:189007..192072-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft961_9a-0001 ID=EsuBft961_9a-0001|Name=EsuBft961_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3066bp|location=Sequence derived from alignment at Scaffold_82:189007..192072- (Ectocarpus subulatus male Bft15b)
GCGATGAAGGCAGCGGCGGAGGCGGCGAGACTAGAGGGGGAAGCAGCTAA
GGCTAAGGCGGGGACGCCCGCCGCCGCGGCGGCAGGGGCGGGGGCTGGGG
CTGGGGCGGCCGCCAGGGTTAAGAACACGCAGCCGAAGAAGACGACGGCA
CGGCAGGCGGCGCTGGAGGCAAAGGAGAGAAAGGCCAGCGAGGTGCGTGG
TGGTGCTTTTGAGGCTCTCTCTCTCTGTCGTCTCTCGTGGTGGCTACGAG
CTTGTCGGTGTAATGATCTGTCTACTCCTCATCTCGTCAGTGTTGGTGTG
CGTTCTCTTTAGATGTTTAGCTCACTCACAGCTGTTGGTGGCGGTGGATT
GAGCCTGTTTCGTCACGATGGTTTCGAGTTACGAGCCGTTCGGGGGGGTG
TCTGTCTGTATATCCCTCATCCTCATCCCTCACACGCACTCTTCTCGTCA
TTCTGGGCGTGTGCTCTTGGATGTTTGATTGGCAGCGGCTGGTGGTGGTG
CTTTAAGGCTCTCTCGTCACGACGACTGCAAGCTTCCGAGTGCTCTTTCG
CACAGATCCCTCAGCTCGCCGTTGCACCTTACCGCTCAAGAGTTTGTCTG
CGCTGCTGGTGGTGATGGGATTGTGCGTGTGGGTGTTTTCTCGACTCCAT
GTGGTGCTTTGTTTGGTTGGGATGTTTGGTCTTTTCAGATCATACGCCCC
GTTTTTTGGGACGCGAGCAGAGGTTATGTATACTTCCACACCCGCCTCTG
ATTGAACAGCAGACGGTTGTTGTTGTTGTTGTTGTTACTGTTTCTCACAT
TAGCTCTATAGTCCACGAAAAATGGGGAGCCCGTGGTCTCAATACTCGGC
ACATACGACGCCGCGGGGGAACAAAACAAAAACATACTTGCAGTTCCTCG
TTCTGGCACGATCGCCGTGCAAACACGAATCGAAGCTTGTTTCGTCGCTG
CAAGCTTGTTTCGTTGCAAGCTTGTTTCGTCGTTGCAGGCTTGCTTCGTC
GTTGTCGCTCCGAGTGTGATCAGTCCACAACGCATGCCAGAGGGAGGCCT
TCGGCCGACGACATTCACAAGCTGCAGCCTATGGCATGCGGTCATACATA
TGCTCTCTCTCTCTGTGGGCGAACCAAAAAAACAGGGCGCCCCTAGTCTT
GCTGGCCGTACACGAGCCGAAAATGTGGAACTGAATGAAACATGCTCATA
GCTTGAATCAGCCTTTTTCTTTCCCATTTGGGCAGAAATGAAAATAAATA
TGCCTCGAGGAGCCGTAAGAAGGTCCGTCGGATCTGAATTCTGTTCCCCG
GCAGGCCGCCCCCCCCCAGTGAGAGAGGACGAGAAATCCCGGAAAAACGG
TGCTTGAGAAACGGCCCAAGATAGGTCTTCTCTGGTTTCGTTTTTCCCTT
TTTTTTCATTATATCGCACGATTCACCCATCTCTATCCGCAGGTATCTGT
GATATTTTTTTTTGAGAATATACATAACACGTTGGCTACAACCGTTCGAG
ATTACAGTCGAATGTATACTTCATTTCGTTTATTTTGTTTTCATGTTATT
TGCTTATTTTATCTAACATACATGACAAACACAGAGATTACAACCCGTTC
GAGGTCACCGTCGGAGGTATACTTAATTTTGTTTTTATTTATGTACTTTT
TTTTTCGGCGCGGCAGGAGGCGGAGGCAAAGAAGGCCCAGGCCGCCGCCG
CGGCCGAAAGAGAAGCGCAGAAGATCAAGGACATCAAGGTCGAGAAGAAT
ATTGCCACGGCAGGGGCGGCGGCCTCTGCAGCGAAGCCGCGGCCGCTGCC
GCATGAGGGTCACCAGGCGGCCCCCGCCAAGAAAACAACAACTCGGGCGA
GAGGTCGGGCAGCAGCGCCGGCTACATCAAAGGCGAAAGCCGCCACTGTT
GCCGGGGAGGGGGAGGGAGGGGGCTTGTCCAAGGAGGGGTTGATGAAGTT
GACGGTGAAGGATTTGAGGGAGCGTTGTAAGGCGGCCGGGGTGCCGACAT
CGGGGAGGAAGGCGGACATCGTGGACCGACTATTAGACTCGGGCCTCGTT
GCTTCGTAGTACCTAGTAGCTTGCATGCCATACAATACAGTACTGATTTA
CTATTAGAACGCAGGTCTCGGTGGTAACAGTACCTCGTGAAATAGCGTAC
GTACCATACAGCGGGCGATGCTGCTGCTGTTGTTATTGTTGTGATGCGCT
GAACGGCTGTCGTTCTTAGGCGCGTGTTGCCCTTCTCGGAACCAATGCTT
CACTTGCCGGCTCTTGAGGAGACGCTGGCTGTCCTTGACAAGCCACGAAA
CCGGCGCCGGACCGCTTCCGGGATCTGCTCTTTTGATTCTACGGCTGAGA
TTAATAAGTGGAATGTGAATCCATCTCCGCTCTTTCGCGTAACGTTTTTG
GCAGTTCTAGTGACAACGCCGGTGATATCTCCCGTCTAGGAATCCGATAG
GGTGAAGGTTAGGTGTTCTTGCTTGGGGTTTGGTTGGTTTCCCTATCTGA
TTTGGTGTTGTCGGGGAACGTCCGCAGGTAGCAGCTAGCCGAAGAGGCAC
CTGGTAAGTTTACAGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGTTTTNN
NNNNNGGGGGGGGGGGGGGGGACGGGCGGTCTTTTGACAAACGAGCGCTG
TCGTCGGAAGGGAAAGTGGATGCGAGCTTTTCGTGGAAAAGCATAGCATG
ATGCCGATGTTTTTTTTTAGATGTTTTCTTCTTTTAGGAAAAAGGCATGC
GCGGGTGTGGGCGTGGGTGTGTAGAGAGGCCATGACAAAAACAATGAATG
AAAACCGAGCCTCAGCATATATTCGCCTACCGCTCAACAACGCAAGATTG
TAGCGGTGGCGAAGGGTGTAGCGCAGGAAGAGAGCAAGAAGCCAAGGAGA
TGACGCTTGCCATGTAGAAAGGAGAGGAAGTGTGTGTTTTGTGTTGTATT
TGATAGAGAAGGAGGGGGCGCGCGGTTGCCGCCCGCGCGTTGTGTACGCT
ATTTCTCGCTTGGATTTTTATTGACGAAAAGGCAACCCGGAGCAACGAAT
GACGTCGGTCAGGACT
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Coding sequence (CDS) from alignment at Scaffold_82:189007..192072-

>EsuBft961_9a-0001 ID=EsuBft961_9a-0001|Name=EsuBft961_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=582bp|location=Sequence derived from alignment at Scaffold_82:189007..192072- (Ectocarpus subulatus male Bft15b)
ATGAAGGCAGCGGCGGAGGCGGCGAGACTAGAGGGGGAAGCAGCTAAGGC
TAAGGCGGGGACGCCCGCCGCCGCGGCGGCAGGGGCGGGGGCTGGGGCTG
GGGCGGCCGCCAGGGTTAAGAACACGCAGCCGAAGAAGACGACGGCACGG
CAGGCGGCGCTGGAGGCAAAGGAGAGAAAGGCCAGCGAGGAGGCGGAGGC
AAAGAAGGCCCAGGCCGCCGCCGCGGCCGAAAGAGAAGCGCAGAAGATCA
AGGACATCAAGGTCGAGAAGAATATTGCCACGGCAGGGGCGGCGGCCTCT
GCAGCGAAGCCGCGGCCGCTGCCGCATGAGGGTCACCAGGCGGCCCCCGC
CAAGAAAACAACAACTCGGGCGAGAGGTCGGGCAGCAGCGCCGGCTACAT
CAAAGGCGAAAGCCGCCACTGTTGCCGGGGAGGGGGAGGGAGGGGGCTTG
TCCAAGGAGGGGTTGATGAAGTTGACGGTGAAGGATTTGAGGGAGCGTTG
TAAGGCGGCCGGGGTGCCGACATCGGGGAGGAAGGCGGACATCGTGGACC
GACTATTAGACTCGGGCCTCGTTGCTTCGTAG
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