EsuBft961_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft961_6a-0001
Unique NameEsuBft961_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:198318..202777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft961_6
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTMhelix
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon6
Length137
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionSAP domain
Ec32 orthologEc-04_001700.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft961_6aEsuBft961_6aEctocarpus subulatus male Bft15bgeneScaffold_82 198318..202777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_6a-0001EsuBft961_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 198318..202631 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_6a-0001-exonagat-exon-89201Ectocarpus subulatus male Bft15bexonScaffold_82 198318..198632 -
EsuBft961_6a-0001-exonEsuBft961_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 199592..199991 -
EsuBft961_6a-0001-exonagat-exon-89202Ectocarpus subulatus male Bft15bexonScaffold_82 200674..200712 -
EsuBft961_6a-0001-exonagat-exon-89200Ectocarpus subulatus male Bft15bexonScaffold_82 201060..201117 -
EsuBft961_6a-0001-exonagat-exon-89199Ectocarpus subulatus male Bft15bexonScaffold_82 201258..201535 -
EsuBft961_6a-0001-exonagat-exon-89203Ectocarpus subulatus male Bft15bexonScaffold_82 202492..202777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_6a-0001-cdsEsuBft961_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 198318..198632 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_6a-0001-exonagat-five_prime_utr-15318Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 202632..202777 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft961_6a-0001 ID=EsuBft961_6a-0001|Name=EsuBft961_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1376bp|location=Sequence derived from alignment at Scaffold_82:198318..202777- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTTCGGAGAGCGACATTCAAGCACGTGCGAACGGCTCAGGGCGCCCCAA
GATCTGCACCTTGTGCCAGCCAAGGGCGTGCTGCCGAGTGGGCGCGGAGG
TAGATTGTGCAAGAACGAGAGTCGTCACGAACGAGGACTATTGAAGATGC
GGGGTCGGCGAGTCTCGCTGGGGGTTGTTGTCCTGGGGTGGAGTCCATCA
GTGCAAGCCTTCGTTGCACCGTCGATTCCCGAGGCATCGTCTGCGAAATG
CGTACCGCTGTCGACGCCAGCAGTCAAGAGCGGCAGCGATGGCAGCAGCA
GCAGAAGCAGCATGAGCAATAGCGGGAGCGCCATCGGCATGAGCCGCCGA
CGGGCTGCTCTGGCCGCATCAACATCGGTCCTGAAGATGAGCGGCGAGGA
CGAAGCGGCGGAGGAATACGGGGACCCCGCGGCAGAAGTTGAGGTAGTTG
CCGCTGACAAAAGGAAGGACGCGGGCGTGCTGGCGGCGACGGGAGCGACG
GGGGCGATCGTGGGGTGGAGCTTGGGGCACTCCCTAGGGCTGGACATGAT
GGGAATGTTCGCAGGTGGCTTGCCACGGAAGGAAGGCGTCCGCTTCAGTA
AGAGCAGTACGGATATTAGAAGGCGAGAAGAGGGATTGGGTGGTGTACAG
GTCGCAACGAGCCGTCGGGATCACCAAGATGTTCGGAAAGGGCTCTCTCG
CCGAAAAAGAACTTACCTCCGAACATCGGAAGAAATCTTAACCTTCGTGG
ATCGTGCTTCTTACGCCGCTCGGACGGACACCGAGAAACATCGTAGTGCC
TCCTCCTGCCTGGCACACCCTGCTCCTCCACCAATTCGTGTTTTTTTCGC
AGGCTGTCTGGCAGCGGTAGGGCTTTTGGCGCAGGAGGGCACGATTGGGC
AAACGACCGCGAAGGTCGGCGAGTTCGCCCTCGGCGCGTTCGAAGTGGTT
AGCACCGTAGCTACGAGCACCAACGTCCCCGCAAAGGTGGCCAGCTCCGT
CGGAGAGGAGTTCCTCGAGGTGGTAGAATTTACCTCGGGTGCGGTCACAA
AGGTGGGGGGTCGTTCTCTCAAACCCCTTTTCGGATCCTCCTCTCACATC
TTCACCCAACACTTTTTTCACGCCAACTCGGGAACTCCCGGGGGGACTGA
AAAAAAGGGGTACATGGACAGCCTTCCGGATCCTGTGGTCAGGTACAAGG
CCCAGATCGCTAGATCCAAGCAAACCGCCGCGGAGCTGAAGGAACAGCTG
GACAAGGTGTCGGCGGCGTTCGCTGAGGCCAAGAAGCAGCTCAAGCAGCG
GGCGGAGAACCAGAGGATTGTGGACGCGGCCAAGACCACTGTTGCTGAGC
TGGCGGTGAGCGGGGGTGCACCATAG
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protein sequence of EsuBft961_6a-0001

>EsuBft961_6 ID=EsuBft961_6|Name=EsuBft961_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=409bp
MRGRRVSLGVVVLGWSPSVQAFVAPSIPEASSAKCVPLSTPAVKSGSDGS
SSRSSMSNSGSAIGMSRRRAALAASTSVLKMSGEDEAAEEYGDPAAEVEV
VAADKRKDAGVLAATGATGAIVGWSLGHSLGLDMMGMFAGGLPRKEGVRF
SKSSTDIRRREEGLGGVQVATSRRDHQDVRKGLSRRKRTYLRTSEEILTF
VDRASYAARTDTEKHRSASSCLAHPAPPPIRVFFAGCLAAVGLLAQEGTI
GQTTAKVGEFALGAFEVVSTVATSTNVPAKVASSVGEEFLEVVEFTSGAV
TKVGGRSLKPLFGSSSHIFTQHFFHANSGTPGGTEKKGYMDSLPDPVVRY
KAQIARSKQTAAELKEQLDKVSAAFAEAKKQLKQRAENQRIVDAAKTTVA
ELAVSGGAP
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mRNA from alignment at Scaffold_82:198318..202777-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft961_6a-0001 ID=EsuBft961_6a-0001|Name=EsuBft961_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4460bp|location=Sequence derived from alignment at Scaffold_82:198318..202777- (Ectocarpus subulatus male Bft15b)
GTTTCGGAGAGCGACATTCAAGCACGTGCGAACGGCTCAGGGCGCCCCAA
GATCTGCACCTTGTGCCAGCCAAGGGCGTGCTGCCGAGTGGGCGCGGAGG
TAGATTGTGCAAGAACGAGAGTCGTCACGAACGAGGACTATTGAAGATGC
GGGGTCGGCGAGTCTCGCTGGGGGTTGTTGTCCTGGGGTGGAGTCCATCA
GTGCAAGCCTTCGTTGCACCGTCGATTCCCGAGGCATCGTCTGCGAAATG
CGTACCGCTGTCGACGCCAGCAGTCAAGAGCGGCAGGTGCGGGCAGGGCA
TAGCAGTTGACAAAGGAGCAAGACCGAGAGAGTGTTACTACACCCGCGTT
TGGCCAACGAACGTCATGTTTTTCTTGCGGAGCTATCCAGAGTTGGCTGC
TGCGACCCCGTGTATGCAGCATAAGTTATCCTCAGCAGCGTGAGGGGGTC
CTGTAGCCCGCAAACTCGTGTTACACATTTGTTGGACCCGACCTGTGCAA
CACAAGGACTCGTGGCCTTGTTTATTCGGCAGTGTTGGGGGGCTCGCTCC
GCTTGGCACAAGTTTGCAGCGTCCCCCCGATTGCTGCTGCTGCTGCCGTA
CCAAGCATGGGTGGACGGACCAAACAAAATGCGGGAAAACCTTGGCTACA
AACGACACACCCTCCTAATATTGTCACGAACAAAAATAATTTGTGCACAC
CGCCCGTGCGTAGCGTGCGCGCATGCTTCCGTCAAGAAGGACTGCAGTTG
TTCCGCCGCCACACATCTCACTCTCTCTCTCTCTCGTCCTACACCACACA
CCGACCCATGGGGTATTGTCACCGCCGCCTTGCACACCATTTCTTTCACT
GCTGTTGGATCTGTTGGAAGTAGATCTTGCAGTATGAGGGGCTCCCTCCC
CTCCTGGAAACATGTGTCTGGTGCACACGCTCTTGTGCTGTTCTCTCACA
TGCACGTGTGTGTGGGGCTGCCTACCGCGAGGACGTTACGCTTATTTAAG
CATGAAGTACAGCAAAGGCAGGAGTTACGTAGCCCCTATCCCTAACACCC
GAGCTCCACAGATTCCATACTTGATGCAACATGTTATAGCATAGCTTCAT
CGACATCTGCGTTACAGGCAACCTGCGCTTGCACTCGGGACCGCACGCCG
AAAAAATGGCGACCAGCGCGCATGCGTACACAACCAACGGCGTCACGTAA
AAGAGTGCTCAATTTTGCCCGCAACCATGTCCACCCTACCAGCGATGGCA
GCAGCAGCAGAAGCAGCATGAGCAATAGCGGGAGCGCCATCGGCATGAGC
CGCCGACGGGCTGCTCTGGCCGCATCAACATCGGTCCTGAAGATGAGCGG
CGAGGACGAAGCGGCGGAGGAATACGGGGACCCCGCGGCAGAAGTTGAGG
TAGTTGCCGCTGACAAAAGGAAGGACGCGGGCGTGCTGGCGGCGACGGGA
GCGACGGGGGCGATCGTGGGGTGGAGCTTGGGGCACTCCCTAGGGCTGGA
CATGATGGGAATGTTCGCAGGTACTAAATTTTTTTTCCGTCTTAGTACTC
TTCACTCTTTTTAGGCGATGTGCTTCATTCAGACAACAACCACAAACCAG
CGCACTTTTTGGTTTGTTTTATGTTTTTTATGATTGCTCTAAATCAGTTT
TTTGGGGTAGGTGGCTTGCCACGGAAGGAAGGCGTCCGCTTCAGTAAGAG
CAGTACGGATATTAGAAGGTACTGAGCGGAGACCGGAACGGTTTTGAGTG
TAAGACGGCAACATCAACGAACAACAATAAATCAGAGCTTGCTGCTGGGC
ATCGGCTTCAATCCGTGCTCACTTCTCACATGGAAGGTGAAGGTTTCTCT
CCCTGAGGCGAACCTACACCCACCCCTCCTGCTACGCCTGCCCCAAACGG
AGAACATAATATTTCATAGCTGGCTAAATATGAGTGATTGTGCTGATGTA
CATGGTTTGATTTATTGATTACTCGTACGTGTGGTGTGTGTGTTCATCCC
AACTACGCTGGCGCTAGTAGATCATATGTGCATGACGGAAAATTCTTCTT
TTTTTGGAGGAGCAGGCGAGAAGAGGGATTGGGTGGTGTACAGGTCGCAA
CGAGGTTAGTCTTAGGCAAAAGCACAGCGTTGCCCTTGGATATGCTTCTT
TTTACGCCCACAAAGACAGGTCACGCGCAACACACTAAAAACCTTTTTCC
AACAGTGCGATCCGTTGACTTTCACATAATATAGGTTGGGTTAGGGCGGT
TTAGGGTTGGGAGTTTAGCGCACAGCAGCAACACACCTCTCTAGCTACAC
ATTTCCCGGTCTCATGACAAGCCTACAACAACGCGCTTCCCCACCTACTG
GTTTTCAGGTCGCAAGACTATGCTACGACACCTTAAACGGGCAATAAAAA
GACTGCTGTATACAGATTTGTGAGATTTCACTACCAAGAATTATCGGAAT
AGTTTTCCCGCCGAGAAGTTGCATGTCGGTGCTTCTCTCTAGGGACATGG
ATGGTCGCAGTCTGGGGGTGTCTCTGGGGGGCACCGTAGGTTGCATGGGA
CATGACTCCCCCTAGACCGATCTCTAAGCTGAACTACTCTGCAGCACAAA
CAGTGCGAGCACAAACAGTGCGGTGCCCCCGAAAATGGCGGCGTTGGAAC
AGACTCGTCGATGGCTTTCCGAAGACACATCTCTTTGACTGCTGTGGCAT
TCTTTCTCGTTGTCGTGGAGTGATGGAGCATTATGATCGGTCCGGGAGGT
GTGGGGCCTTATGCAACCTGCTGGGGGCTCGTGCAGCCGTCGGGATCACC
AAGATGTTCGGAAAGGGCTCTCTCGCCGAAAAAGAACTTACCTCCGAACA
TCGGAAGAAATCTTAACCTTCGTGGATCGTGCTTCTTACGCCGCTCGGAC
GGACACCGAGAAACATCGTAGTGCCTCCTCCTGCCTGGCACACCCTGCTC
CTCCACCAATTCGTGTTTTTTTCGCAGGCTGTCTGGCAGCGGTAGGGCTT
TTGGCGCAGGAGGGCACGATTGGGCAAACGACCGCGAAGGTCGGCGAGTT
CGCCCTCGGCGCGTTCGAAGTGGTTAGCACCGTAGCTACGAGCACCAACG
TCCCCGCAAAGGTGGCCAGCTCCGTCGGAGAGGAGTTCCTCGAGGTGGTA
GAATTTACCTCGGGTGCGGTCACAAAGGTGGGGGGTGTATTATTTATTCA
CTTGTTTTTGTAGGCAGCGCCTTTCTAGAGTTTGTATCAAGTACTTTGTG
TAGCACGCGCCGTCACTGGAGGAGAGGCGGGACTAAAAAATTGACAGAAA
CTCTTGTGTAGTCCGGGTGATACTCCAACTTGGACACCAAGAGACGTGTT
CACTGGCAGCCAGAATAGATAGATGGGGCGAACACACACACGCACTTGAG
TCAGTTTACTGGCACAGCGATAGTGTTACCATGAAGACAGCAACAATTTT
TGCATTACATGACACAGAGGAGGAGAAAGTTGAGTTATGTAGAGCCTCTG
AGAGGGTTGAAGGACTGTCACGTGCTGGATACTCCGTTGTTGTTTTCTCG
AGGATGGGTAGAGTACTCCACTACTGTTTCTCGAGGATGGGAAGAGGCGT
AAAATGCTTGGCAGTCGCCGTGTAAAGCCTAGTGCTAGATAGAGGGAGGA
AGACTCCTTGCGAGCGGTGTGTGCAACGAACGTTCTCACCCTACCCTTTA
GGACTGGTTCGAATCTTCCCCTCCCCCCCCCCCCCTCGTCTTCACGTTCG
CCTCGGACTCGTTTTTGCAAACTCTGGAACCCCAGCTGCGCGTGTAACGT
CCCCCCATCGCCTTCTCGATTAATGTTGGAACCTCCCTCTCACCCCTCTG
CCTTTCATGCTGCATTCTCGAAGACGCGTGGCCTAACAGTTAAGGCTCGC
AAAACATTAGTACGCCCCCCCCAGATAGACTAGGGAAGACATTTTTGAGC
CACCTTTGGCAAAGTAGGAAAAAACGATTGGACATCGGTGATCGGTCTTG
TGGGAACAATGCTCCGTCCTCTCGACGACGCGTGGCCAATGGTCTAACCG
CTAAGGCATGCAAAACATGAAGAGTACACACATCCCCCCCGTCTTGACCA
ACACTTTTTTCCCGCCTCTGAAACCCCAGCTTCGCGTGTATGTAGCGTTC
TCTCAAACCCCTTTTCGGATCCTCCTCTCACATCTTCACCCAACACTTTT
TTCACGCCAACTCGGGAACTCCCGGGGGGACTGAAAAAAAGGGGTACATG
GACAGCCTTCCGGATCCTGTGGTCAGGTACAAGGCCCAGATCGCTAGATC
CAAGCAAACCGCCGCGGAGCTGAAGGAACAGCTGGACAAGGTGTCGGCGG
CGTTCGCTGAGGCCAAGAAGCAGCTCAAGCAGCGGGCGGAGAACCAGAGG
ATTGTGGACGCGGCCAAGACCACTGTTGCTGAGCTGGCGGTGAGCGGGGG
TGCACCATAG
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Coding sequence (CDS) from alignment at Scaffold_82:198318..202777-

>EsuBft961_6a-0001 ID=EsuBft961_6a-0001|Name=EsuBft961_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1230bp|location=Sequence derived from alignment at Scaffold_82:198318..202777- (Ectocarpus subulatus male Bft15b)
ATGCGGGGTCGGCGAGTCTCGCTGGGGGTTGTTGTCCTGGGGTGGAGTCC
ATCAGTGCAAGCCTTCGTTGCACCGTCGATTCCCGAGGCATCGTCTGCGA
AATGCGTACCGCTGTCGACGCCAGCAGTCAAGAGCGGCAGCGATGGCAGC
AGCAGCAGAAGCAGCATGAGCAATAGCGGGAGCGCCATCGGCATGAGCCG
CCGACGGGCTGCTCTGGCCGCATCAACATCGGTCCTGAAGATGAGCGGCG
AGGACGAAGCGGCGGAGGAATACGGGGACCCCGCGGCAGAAGTTGAGGTA
GTTGCCGCTGACAAAAGGAAGGACGCGGGCGTGCTGGCGGCGACGGGAGC
GACGGGGGCGATCGTGGGGTGGAGCTTGGGGCACTCCCTAGGGCTGGACA
TGATGGGAATGTTCGCAGGTGGCTTGCCACGGAAGGAAGGCGTCCGCTTC
AGTAAGAGCAGTACGGATATTAGAAGGCGAGAAGAGGGATTGGGTGGTGT
ACAGGTCGCAACGAGCCGTCGGGATCACCAAGATGTTCGGAAAGGGCTCT
CTCGCCGAAAAAGAACTTACCTCCGAACATCGGAAGAAATCTTAACCTTC
GTGGATCGTGCTTCTTACGCCGCTCGGACGGACACCGAGAAACATCGTAG
TGCCTCCTCCTGCCTGGCACACCCTGCTCCTCCACCAATTCGTGTTTTTT
TCGCAGGCTGTCTGGCAGCGGTAGGGCTTTTGGCGCAGGAGGGCACGATT
GGGCAAACGACCGCGAAGGTCGGCGAGTTCGCCCTCGGCGCGTTCGAAGT
GGTTAGCACCGTAGCTACGAGCACCAACGTCCCCGCAAAGGTGGCCAGCT
CCGTCGGAGAGGAGTTCCTCGAGGTGGTAGAATTTACCTCGGGTGCGGTC
ACAAAGGTGGGGGGTCGTTCTCTCAAACCCCTTTTCGGATCCTCCTCTCA
CATCTTCACCCAACACTTTTTTCACGCCAACTCGGGAACTCCCGGGGGGA
CTGAAAAAAAGGGGTACATGGACAGCCTTCCGGATCCTGTGGTCAGGTAC
AAGGCCCAGATCGCTAGATCCAAGCAAACCGCCGCGGAGCTGAAGGAACA
GCTGGACAAGGTGTCGGCGGCGTTCGCTGAGGCCAAGAAGCAGCTCAAGC
AGCGGGCGGAGAACCAGAGGATTGTGGACGCGGCCAAGACCACTGTTGCT
GAGCTGGCGGTGAGCGGGGGTGCACCATAG
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