EsuBft961_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft961_5a-0001
Unique NameEsuBft961_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:204667..208622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LFM3
ProteomeIdEsuBft961_5
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSM00212
Protein domainsPS51257
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsPTHR24067
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsTRANSMEMBRANE
Protein domainsSIGNAL_PEPTIDE
Protein domainsIPR016135
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsIPR000608
Ownerapollo_admin@sb-roscoff.fr
Noteubiquitin-conjugating enzyme e2 j1 os:homo sapiens gn:ube2j1 pe:1 sv:2 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1222
Hectar predicted targeting categorysignal peptide
Evalue1.47e-176
EggNOG OGsCOG5078@1|root,KOG0428@2759|Eukaryota
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-04_001690.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameUBE2J1
KEGG koko:K10578
KEGG Pathwayko04120,ko04141,ko05012,map04120,map04141,map05012
GOsGO:0000003,GO:0001817,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006486,GO:0006487,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009889,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010556,GO:0010605,GO:0016567,GO:0016740,GO:0018193,GO:0018196,GO:0018279,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030433,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031625,GO:0032268,GO:0032269,GO:0032386,GO:0032387,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032680,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0034645,GO:0034976,GO:0036211,GO:0036503,GO:0042035,GO:0042176,GO:0042177,GO:0042221,GO:0042534,GO:0043161,GO:0043170,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0044703,GO:0045861,GO:0048232,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051051,GO:0051171,GO:0051172,GO:0051223,GO:0051224,GO:0051239,GO:0051246,GO:0051248,GO:0051603,GO:0051704,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070085,GO:0070201,GO:0070647,GO:0070861,GO:0070862,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090317,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903555,GO:1903573,GO:1903827,GO:1903828,GO:1904152,GO:1904153,GO:1904292,GO:1904293,GO:1904950,GO:1905897
EC2.3.2.23
Descriptionubiquitin protein ligase binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Cross References
External references for this mRNA
DatabaseAccession
GO0004842
GO0006513
GO0033554
GO0042221
GO0018279
GO0000209
GO0005783
GO0030433
GO0048471
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5aEsuBft961_5aEctocarpus subulatus male Bft15bgeneScaffold_82 204667..208622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5a-0001EsuBft961_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 205017..208617 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5a-0001-exonagat-exon-89198Ectocarpus subulatus male Bft15bexonScaffold_82 204667..205499 -
EsuBft961_5a-0001-exonagat-exon-89197Ectocarpus subulatus male Bft15bexonScaffold_82 206190..206345 -
EsuBft961_5a-0001-exonagat-exon-89196Ectocarpus subulatus male Bft15bexonScaffold_82 207194..207329 -
EsuBft961_5a-0001-exonEsuBft961_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 208526..208622 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5a-0001-exonagat-three_prime_utr-23543Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 204667..205016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5a-0001-cdsEsuBft961_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 205017..205499 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_5a-0001-exonagat-five_prime_utr-15317Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_82 208618..208622 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft961_5a-0001 ID=EsuBft961_5a-0001|Name=EsuBft961_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1222bp|location=Sequence derived from alignment at Scaffold_82:204667..208622- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACGGCATGATGGCGCGCGAGCGGTGTAGCTTGCTAAGGCGATGGTGGGCT
CTCGTTTTGTTGATGGGCATGGCCTGTTCCTCGGCAAGACGGTCGAGTCA
CGTGTTGTCCCAGAACAGCCCTTCCATGAGACGCATCATGAGCGAGTGGA
AGCAGGTCCAAGCGGACGGGCTGGCCATGGGGCAGGGCCATTGGAGTTCC
AAAGGAAACTCAAGCGAAACGTTTCGATTAAAGCCGGTGGGGAACATGTT
CGAGTGGCATTTCACCTTCCTGGGCGCGAAGGACTCACCGTTCGAAGGCG
GACTCTACCATGGGAGCATCTCCCTGCCCGAGAACTATCCGCAGTCTGGC
CCGTCCGTCCGGCTGCTCAACACCAACATGCGTTTCAAGGTCGGCTCGCG
AATATGTCTCTCAGCCAGCGAGTACCACCAAGAGACCTGGCAGCCTTCCT
GGACAGTAGCATCACTGGTGTCGGCGCTGGTGGCCCACATGACAGAGGCC
GCGGTCGAGATCGGCGCCGTCAGGGGCGCGACGCCGTCCCAGAAGCGAAA
GGCGGCCGTCAAGTCACGCAGCTTTGTGTGCGCCGCCTGCGGGTGCTGCC
ACGATGCGTTCCCAGAGGACAGGTTTCCGATACCAAAGGGTTTCGATAAG
GGGAAGAAGGCGGGTGCGGGGGCTGATGGGTCGGCGGGGGCTCGGCGAGA
GGCACGGGTGGCGGTGGGAGTGGGGGAGGCGCCGGCAGCGGCGACTAGGG
GAGGCTTGACGGGGCGGAGTAGGTTGTCGTGGACGGTGCGGCTGATGACC
AGCAAGCCGTTCTTGCTCGCCTTGACCTTGATTATTGCCAGCGTCTTCCT
GAATCAGCCTAGACATAGCTGATCCATGCTTACTCGATATCGTGTTGACG
TCCAACTATATGCTGGTGAAGGTGTAGACTATGAGCTATTCTGACAAGTC
ATGGGCCATGGCCCCGTTGTAGCCCACCCAAGCTCACATCCCGCTGAACG
GGGGAGGGGTTGCTCAGCTTTGCCGCCTTGAGCACCTACCTCAAGGGTCG
GCACAAGATGTGTGCTGCACCCTCCAGTACCACCTACATCTTACAATGTA
GACTGCACGAACCCCGTAGAGATAGACGACTACCCCAGTATTTTGTCGAT
GGTTTGCTGGTGCTTCTGTGGCACAAGACGTCGATCGTGCACAAGAATGA
CCCTGCAGATGTCACGGAGATC
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protein sequence of EsuBft961_5a-0001

>EsuBft961_5 ID=EsuBft961_5|Name=EsuBft961_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=288bp
MMARERCSLLRRWWALVLLMGMACSSARRSSHVLSQNSPSMRRIMSEWKQ
VQADGLAMGQGHWSSKGNSSETFRLKPVGNMFEWHFTFLGAKDSPFEGGL
YHGSISLPENYPQSGPSVRLLNTNMRFKVGSRICLSASEYHQETWQPSWT
VASLVSALVAHMTEAAVEIGAVRGATPSQKRKAAVKSRSFVCAACGCCHD
AFPEDRFPIPKGFDKGKKAGAGADGSAGARREARVAVGVGEAPAAATRGG
LTGRSRLSWTVRLMTSKPFLLALTLIIASVFLNQPRHS
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mRNA from alignment at Scaffold_82:204667..208622-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft961_5a-0001 ID=EsuBft961_5a-0001|Name=EsuBft961_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3956bp|location=Sequence derived from alignment at Scaffold_82:204667..208622- (Ectocarpus subulatus male Bft15b)
ACGGCATGATGGCGCGCGAGCGGTGTAGCTTGCTAAGGCGATGGTGGGCT
CTCGTTTTGTTGATGGGCATGGCCTGTTCCTCGGCAAGACGGTCGAGGTG
AGTTTAAGCATAAAATACAGCAGGTTGGTGTATTTCACGCGGAGGGATTA
CGGACGGCGTCGTTCTCGCCAAACCCATATCCTGCAGCATCATCCGCGAT
ACGTGAGGTGCTCTCGAGAGGGCCAATGACCGCTGCTCGCATACCGCATA
CCGGGCAACATGGGTCTGCATGTTGGTACGCTTGGGGCAGATGTTGTCGT
GCGGCACACACACACGAACACAATAAACACACACACACGAACGTAGTACA
ACATGCAATTTTGACCGCTCTCTCTCTTGTAGCAGGTACCTACAGGTGAG
ATAAGATATCACACCCCGTCTAGACCACTTTTCAAAGAATGACTACACCC
CACCGCAACAACGATGGTGGCGTCGAGAATGGTGGCGTTGGAACCGGCTT
ATTGAGAGCTTTCCCACAATATATGATATGTTTTTTTCATCCTTTTCGCG
ATGGAGTAGTCGAGCTTTGAGAATGGGCGTAGGGGGTGGTGTATTATGTA
CTGTCACCTACGTTACCGCGCACCGCGCTTTCCATGAAACGGTTACGGTC
CCTCGGTAGAGCACGAAGCGGTTGCTGTACTTACTGAACCCTGCATTTTG
TTGACTCTCGGTGGTGCTGTCGAGCAACAACCTTGCGTCCGTGTGGCTTC
TGTGTCCAACATCGCTTGGCTATGTTGTTGTTGTGCCTACCGCATGTCGA
GTGGACTCATCTCTGGATCTCCCAGTCCTGTCTCTCGATCTCCGACACTT
TCCCACGCCTCTCCTGCGTACCAGTCTACGGCGATCTACTCCACTGTACT
TCTGTTTTATTAGTACAAGAGTATCATTTGTGGTGTGTATGCATACGACG
TTAATTCCATAGCTCTTGACGCCCTCGCCAGCACGCGTTCCGAAAGCGTC
CCTTGGAATATGTTTGTGTTCTGAAGATGTTCAAGTACGTTTGACGGACG
TATCTTACGCTGCCTGTGGGGAATACAGCGCAATGATAAACTCAGGATAT
CGTACAATGATGGAGATGTTGCTGCAGACTCGAGCCTTCGTGTCCCAATC
CCGTCCATCATGCCGAAATTCTCCCCTTCCTACAACGTCCGCGGGTCAAT
TGTTGTTGCTGCGAAATGCCGCGTTTCCGCCCCCCGTTATGGTCTACTCC
CAAGGCATGCAGAACGTGAGTATCCCCCCTCTCTGCCGCCCAGTCACGTG
TTGTCCCAGAACAGCCCTTCCATGAGACGCATCATGAGCGAGTGGAAGCA
GGTCCAAGCGGACGGGCTGGCCATGGGGCAGGGCCATTGGAGTTCCAAAG
GAAACTCAAGCGAAACGTTTCGATTAAAGGTGCGCGAGAGAGCCTTCTTG
CTAGCCTGCAGCCTACCATGTCAGATCAATGTTTGTTTACAGTGGATAGG
GACAGAGCCAGTAATTACTAGAGTGTTGCCTACCGCGTCAGATTTATTGT
TAGGTTAGAGGGGCTATCCCCTAGATCACAGCAGTAAAATCCCGCCTCGC
TTTCTGTGGAGTATGTGTTTCGTTAGATGTTCGGCGGGTCACCAGACGGT
AGCAACCTAGCAACCGATCCGTGTGGAGACACAAAGACGTGCTTCCCTTA
CCCTGAGCATTAGTCATGTTGACATGCACAGAGCTCATGTACAGGTGGGT
AGAGAGCCGAAGGCACTGGGAACCCCAGCTCCCCATTAATCAGATCACAC
ATAGGCTCCGTGTATCATGCCGACCGCCGGGCACCCCAACTGCTGAACAT
AAGCACATTGTCACAAAATCACAATATCACAATTTTCAGACGTCACCCAC
TTCCCGGAGAATAGTGAGAATACTACCCCCGGCTGATACAAACAGTCCGT
GGCACGCGGATATGCACCGACCCCTGTTTCGAAGAGTAAGCTATCCATGG
ACGTGCTGCACACACCAGCGTAATTTTTCCCCACGCTGCTCTTGTGCGTT
TGTCCTTGCTTCCCAACACCAGCCTTATATCCCCCTTCGTTGCCCTCGTC
TTTTACCCGTGCTTGCCAACACAGGTCTTATTCTTCCCTGCTCTTCTATT
GTGTTTTGCCAGCACCAGCCTCATGTTTCCCTACTCTGCTCTTGTGTTTT
GCCAACACCGGCCTTTTTTTTTCCCTACGCTGCTCTCGTATGTTTGCCCC
TGCCTGCCTGTACCGTATGAACACCAGCCGGTGGGGAACATGTTCGAGTG
GCATTTCACCTTCCTGGGCGCGAAGGACTCACCGTTCGAAGGCGGACTCT
ACCATGGGAGCATCTCCCTGCCCGAGAACTATCCGCAGTCTGGCCCGTCC
GTCCGGCTGCTCAACACCAACATGCGTTTCAAGGTCGGTTGAATGTGTTC
TTGTATACTTTCTAAGAATGTCTTGTGGTGTCGTTGCCGCGGGTCTATTT
GAGTAGGGCATCGTGTGGGATGAAAGGCTCAAGACCAACATGTTGTATTG
TTTGTTGCCCTAGTCTCTGATAAGGGTAGCCGGAAACATGATACTCAGGA
GAACACAAATGGGCACGCAACATGGCCCCTCGCTACATAGCGGGTGCGCA
ATATGTATGTATTATCGACCACCTAAGATAGTTTTGCGCGCGAGCTTGCT
TGTTCCGAAACCAATGCCGCCCTCGCACCGCTTCGCTTCTGTTCCTTCTT
GTCTCTCGGTCCCATTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCAATTATCGACCACCTAAGATAGCTCGGCGCGCGAGCT
TGCTTGTTCCAAAACCAATGCCGCCCTCCCACCGCTTGGTTTCTGTTCCT
ACTTGTCTCTCGGTCCCATTCCACCCCCCCGCAAACAAACCTCTACCAAA
AACTTGGGAAACCGGTACGTAAGGTCGGCTCGCGAATATGTCTCTCAGCC
AGCGAGTACCACCAAGAGACCTGGCAGCCTTCCTGGACAGTAGCATCACT
GGTGTCGGCGCTGGTGGCCCACATGACAGAGGCCGCGGTCGAGATCGGCG
CCGTCAGGGGCGCGACGCCGTCCCAGAAGCGAAAGGCGGCCGTCAAGTCA
CGCAGCTTTGTGTGCGCCGCCTGCGGGTGCTGCCACGATGCGTTCCCAGA
GGACAGGTTTCCGATACCAAAGGGTTTCGATAAGGGGAAGAAGGCGGGTG
CGGGGGCTGATGGGTCGGCGGGGGCTCGGCGAGAGGCACGGGTGGCGGTG
GGAGTGGGGGAGGCGCCGGCAGCGGCGACTAGGGGAGGCTTGACGGGGCG
GAGTAGGTTGTCGTGGACGGTGCGGCTGATGACCAGCAAGCCGTTCTTGC
TCGCCTTGACCTTGATTATTGCCAGCGTCTTCCTGAATCAGCCTAGACAT
AGCTGATCCATGCTTACTCGATATCGTGTTGACGTCCAACTATATGCTGG
TGAAGGTGTAGACTATGAGCTATTCTGACAAGTCATGGGCCATGGCCCCG
TTGTAGCCCACCCAAGCTCACATCCCGCTGAACGGGGGAGGGGTTGCTCA
GCTTTGCCGCCTTGAGCACCTACCTCAAGGGTCGGCACAAGATGTGTGCT
GCACCCTCCAGTACCACCTACATCTTACAATGTAGACTGCACGAACCCCG
TAGAGATAGACGACTACCCCAGTATTTTGTCGATGGTTTGCTGGTGCTTC
TGTGGCACAAGACGTCGATCGTGCACAAGAATGACCCTGCAGATGTCACG
GAGATC
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Coding sequence (CDS) from alignment at Scaffold_82:204667..208622-

>EsuBft961_5a-0001 ID=EsuBft961_5a-0001|Name=EsuBft961_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=867bp|location=Sequence derived from alignment at Scaffold_82:204667..208622- (Ectocarpus subulatus male Bft15b)
ATGATGGCGCGCGAGCGGTGTAGCTTGCTAAGGCGATGGTGGGCTCTCGT
TTTGTTGATGGGCATGGCCTGTTCCTCGGCAAGACGGTCGAGTCACGTGT
TGTCCCAGAACAGCCCTTCCATGAGACGCATCATGAGCGAGTGGAAGCAG
GTCCAAGCGGACGGGCTGGCCATGGGGCAGGGCCATTGGAGTTCCAAAGG
AAACTCAAGCGAAACGTTTCGATTAAAGCCGGTGGGGAACATGTTCGAGT
GGCATTTCACCTTCCTGGGCGCGAAGGACTCACCGTTCGAAGGCGGACTC
TACCATGGGAGCATCTCCCTGCCCGAGAACTATCCGCAGTCTGGCCCGTC
CGTCCGGCTGCTCAACACCAACATGCGTTTCAAGGTCGGCTCGCGAATAT
GTCTCTCAGCCAGCGAGTACCACCAAGAGACCTGGCAGCCTTCCTGGACA
GTAGCATCACTGGTGTCGGCGCTGGTGGCCCACATGACAGAGGCCGCGGT
CGAGATCGGCGCCGTCAGGGGCGCGACGCCGTCCCAGAAGCGAAAGGCGG
CCGTCAAGTCACGCAGCTTTGTGTGCGCCGCCTGCGGGTGCTGCCACGAT
GCGTTCCCAGAGGACAGGTTTCCGATACCAAAGGGTTTCGATAAGGGGAA
GAAGGCGGGTGCGGGGGCTGATGGGTCGGCGGGGGCTCGGCGAGAGGCAC
GGGTGGCGGTGGGAGTGGGGGAGGCGCCGGCAGCGGCGACTAGGGGAGGC
TTGACGGGGCGGAGTAGGTTGTCGTGGACGGTGCGGCTGATGACCAGCAA
GCCGTTCTTGCTCGCCTTGACCTTGATTATTGCCAGCGTCTTCCTGAATC
AGCCTAGACATAGCTGA
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