EsuBft961_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft961_2a-0001
Unique NameEsuBft961_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_82contigScaffold_82:251943..256016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft961_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length235
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft961_2aEsuBft961_2aEctocarpus subulatus male Bft15bgeneScaffold_82 251943..256016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_2a-0001EsuBft961_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_82 251943..253231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_2a-0001-exonagat-exon-89172Ectocarpus subulatus male Bft15bexonScaffold_82 251943..251953 +
EsuBft961_2a-0001-exonagat-exon-89170Ectocarpus subulatus male Bft15bexonScaffold_82 252320..252514 +
EsuBft961_2a-0001-exonagat-exon-89171Ectocarpus subulatus male Bft15bexonScaffold_82 253168..253703 +
EsuBft961_2a-0001-exonagat-exon-89173Ectocarpus subulatus male Bft15bexonScaffold_82 253757..254526 +
EsuBft961_2a-0001-exonEsuBft961_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_82 254867..255129 +
EsuBft961_2a-0001-exonagat-exon-89174Ectocarpus subulatus male Bft15bexonScaffold_82 255442..256016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_2a-0001-cdsEsuBft961_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_82 251943..251953 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft961_2a-0001-exonagat-three_prime_utr-23539Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 253232..253703 +
EsuBft961_2a-0001-exonagat-three_prime_utr-23540Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 253757..254526 +
EsuBft961_2a-0001-exonagat-three_prime_utr-23541Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 254867..255129 +
EsuBft961_2a-0001-exonagat-three_prime_utr-23542Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_82 255442..256016 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft961_2a-0001 ID=EsuBft961_2a-0001|Name=EsuBft961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2350bp|location=Sequence derived from alignment at Scaffold_82:251943..256016+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAGAGCGACGGAGGGCTCGGTCATCATCGTCGTCCGACCGGCGCGA
CGATGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATTTCGATC
TTCCCAAGGACCTGGGGATAAGGACGTGGACCAAGGCTCTCACGAAGGAG
GAGAGGGCCAAGCGGATGACGGGGCTTAAGAGCAAAACCGCCATTCTCTC
CGTGCAGTGCGTCCTTGCTGCCAGGAGACCGGTGCCGGTGGTGGTCTACA
CGGCTAAACCGGTACAGTGAACGTTTTTTCGGGGTCCTCTTTTTCGCTCG
GAGGATGTGGAGTTTGGTGCTTAGGTAGACGTGGTTCGGAGTATGGTCAG
TGACAGGCAACGGGATGCAACTCGCACTTTTTAACGGTTACCACACCGCG
TGCCGGCACCGTACCGAGCTCTGCTGTGTAGTAGAGGGTTTCGGACTGTT
TTGTTGGGATGGTGTGGTATGTAACGCTTTTGTGGACGTGGGTCGGAGTA
CTTTAGAAGGCCAGGGATGAGCAACGGACTGCAAGTGGCAGTTACTGTAC
CCTGTACAGGTACCGTACCGTGTGCACGTACCGTACCGTGCACAGTAGAA
CAGCAGTAGACGGTTTCAGGCATTATTTTGGGATGGTGTGGTATTTAACG
CTTGGTAAACGTGGATCAGAGTACTTGAGAAGGCAAGAGGGAGCAACGGA
ACGCCACCTTGCACTCGACGGCAGTTGTCGCCTTGCGTACAGGTACCGTA
CCGTGAACAGTAATGCAGTATACGGTGTCGTGTTTTTCTGTAAGGGTGAG
GTGGTGTTCAATGCTTGGGCAGACGTGGTTCGAAGTATTTTGTAAGGCCA
GGGATTGGCAACCGAACGCAACCCGGCACTTGATCGTTGCCGTACCGTGT
ACAGAGTTACCGTACCGTTGGCGGGAACCGTACGGTGTACGCAGTACAGT
ATACCGTGTTCATGATTGTTGGGTGAGATTTTGTTGTGTTCATTGCTTCG
TAGGCGTGGGTCGGAGAATCGTAGAAGGCCAAGGATTGGCAACGGAAGGC
AGCCTCGCGCTTGACGGTCACCGCACCGTGTGGATCGACCGTGCCGTGTA
AAGGAACACGCACCGTGCTGTGGACAGACCAACATACGTCGTGCCCTTGG
GGCCTGGTGGCCGCGCTGTTCAGTTTGACCCGGTTTGAGTTTGGTGGAGT
GTTGCACTCTCGTCAGGTGGTTGATCATCCGTGTGGGTGCTGGTTTAGAA
CGACTTTTCGTTCCTCATATATTGTTTTGAGTGTCTTGTCTTTACATGGA
TTTATTTTGGCCGTATCTTTTGCTTGGGGGTATGCTTGACTTAGACATGT
GTTGTTCGACCTCGAGGGTTGTCTTGTCATTTTCGATAACTTTATCGTGC
ATGTGTTGAGTAAGGAGCTTGATCTCTCCCGGGGATGCTCTTGGTTCGGT
GCGAGCGAAAATTAGTGGGTTACCTTCACTTGCTCCAGTGTATTCCGTCT
ATGAATTTCGTGGCTTGATGCTGTGTGGGCGAGCGATGGGGCGGTCTTGG
GGGCACGACCCTACTGCCGGCAAATGGCACGTTCGGCCGTTGGCTCGGGT
AACCAACTCGAGTCTTTGGCACTACACATACCTGAGTATGATGCGATATC
TTTTTTTTTTCTTAATGTAGCCGACATCGCCTCGGATAACCTAGGCGTGG
GGTGGCACCCCAATTATGATCGTCTGCAACTTGTTTTTGTTGTTTTGCAG
AAAATGGCGTGCCGTTTTGATAGTGGGGACGCCCGCAAAACTAGCGGCAT
TTCTGTGGTAGGCTTGTCGGGGTACCATCGAACATACCGTAGAGATGTCG
TGCCGTCCTGTTTACAACCGTTTGATTCATCGCGTTTGTCAAGGGAGGGA
GACGGCAGCATGTAGATTGGACCGAGCCGGCTCCAACACGAGCTTGCTGA
TTTGTATGATATTGCTAAGAGCTCCGGGAGCTTAATTAGCTTCGGTGTTT
TTGGCAGCAGATGAAATGGGCACTCGTTCCTCTGGCCGCCCAAACCAGTA
AATGCAGAGACTTGCGCCTCACACTCCCCATATGAGGGATGAGGGATGTT
TCTTTTGCTTAAGGAGGGGGGGGTGGCGGCAGCGCTTCCAAGGAGAAGTT
CGTCGCAGTCTAACGTTGCCTGCACAGTATTGGTCAACATACTTTTCGTT
CGTTTTGCATGAGTTTTGTTTCTGTTTTTCGTTGTCCGAAGAGGGAATGG
CGATGTGGCGGGGCGCCAACGTCGAAGCGCGTTATTTGAAAGTACAACGG
TGTGCGTGGAATCTACTTCGTGTTCTTATGATGGCTTGAAGATCAACTGG
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protein sequence of EsuBft961_2a-0001

>EsuBft961_2 ID=EsuBft961_2|Name=EsuBft961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=89bp
MVERRRARSSSSSDRRDDDEEEEEEEEEEEDFDLPKDLGIRTWTKALTKE
ERAKRMTGLKSKTAILSVQCVLAARRPVPVVVYTAKPVQ
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mRNA from alignment at Scaffold_82:251943..256016+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft961_2a-0001 ID=EsuBft961_2a-0001|Name=EsuBft961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4074bp|location=Sequence derived from alignment at Scaffold_82:251943..256016+ (Ectocarpus subulatus male Bft15b)
ATGGTAGAGCGGTTCATTAGCATTGAACAGGTAGGGAGATCGATGCTCTC
CACCTCCAGTGTTTTTTTGCAATCCTTATTCGGTTTGTTCTCTCTGATTT
TTTCTTAACCAAGCCGCTCTCGCTATTAGTAGATGTCGAAATCAAACCAT
TTCACTATTCGTCAGCTCTTACAGCTTGAAGAGGTTTGTCTTTCTTTCCG
TGGGACAATACACAACGGCAACTGGAACTTGTTGGGATAGATAATGTCAC
GAATGTTTAACAATCCTCATCTCAACCTATATTTCCGCCAACGAGGTTGT
TTGGCGTGGTGCTGCCACCGCCGTAGATGCCTAAAGATATGCCGCTGCTC
CTGCCGCTGCTCCTGCCGCTGCTGTAGACGGAGGGCTCGGTCATCATCGT
CGTCCGACCGGCGCGACGATGACGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAGATTTCGATCTTCCCAAGGACCTGGGGATAAGGACGTGGACCAA
GGCTCTCACGAAGGAGGAGAGGGCCAAGCGGATGACGGGGCTTAAGAGCA
AAACCGCCATTCTCTCCGTGCAGTAAGTGACATACACGTGCCCGCTCTTT
TCGTAGCCGTTTTTCCATGCTGAACCCCGAGAGCTTTCATTAGGTGTAAC
TCTGTCTCCTGCGAACACCACAAACTGCTTGAGATAAATCCAGTGTTGAC
CTTCCTGCTGCGCTACCCCGGCTGGAAGAATGTGCGTGACGGAAACGGTA
AAAATCTTTCTTGGATCTTTGTTTCCATCCCACCAGTTCACCTCATTTTT
TTTTTTTGCTTTATCGTGAGATTTTTGTATCACAGTGCGTTCGAAGGCAA
TCTTCGCCGAAAGGCATTTACGTGCGTTCGATGCTTTGCGAGTTCGTTTC
GTGTGATTTAAGCGATATGTAGTTGATCAGCCGTCGTTGCTGTTCGGAGC
GTTGCGCGGATATTGCCAGTTTTTTCGGCACGAATACGTACACGTTTATT
CGGCACGGATACGTACAAGTTTTTTCGGCACGAATACGTACACTACCCGT
GTTGTCAAATTCAAGAGACCTCCCCCCTCTCGCGCTGAGACCTCTACTCC
AACAAGCGCGATATACGCCCCCCCCCCCCCCCCNNNNNNNCCCCCCCCCC
TTGCCTCCCTGTCGCGGGTCATCTTGTCGCTTGAACTGCGTTTTCGGTGC
CCTTTGTCTCCCTTCTGTACCGCAGGTGCGTCCTTGCTGCCAGGAGACCG
GTGCCGGTGGTGGTCTACACGGCTAAACCGGTACAGTGAACGTTTTTTCG
GGGTCCTCTTTTTCGCTCGGAGGATGTGGAGTTTGGTGCTTAGGTAGACG
TGGTTCGGAGTATGGTCAGTGACAGGCAACGGGATGCAACTCGCACTTTT
TAACGGTTACCACACCGCGTGCCGGCACCGTACCGAGCTCTGCTGTGTAG
TAGAGGGTTTCGGACTGTTTTGTTGGGATGGTGTGGTATGTAACGCTTTT
GTGGACGTGGGTCGGAGTACTTTAGAAGGCCAGGGATGAGCAACGGACTG
CAAGTGGCAGTTACTGTACCCTGTACAGGTACCGTACCGTGTGCACGTAC
CGTACCGTGCACAGTAGAACAGCAGTAGACGGTTTCAGGCATTATTTTGG
GATGGTGTGGTATTTAACGCTTGGTAAACGTGGATCAGAGTACTTGAGAA
GGCAAGAGGGAGCAACGGAACGCCACCTTGCACTCGACGGCAGTTGTCGC
CTTGCGTACAGGTACCGTACCGTGTACAGGTACCGTACCGCGTACAGGAC
CGTGTCGTGCACAGGTACCGTACCGTGAACAGTAATGCAGTATACGGTGT
CGTGTTTTTCTGTAAGGGTGAGGTGGTGTTCAATGCTTGGGCAGACGTGG
TTCGAAGTATTTTGTAAGGCCAGGGATTGGCAACCGAACGCAACCCGGCA
CTTGATCGTTGCCGTACCGTGTACAGAGTTACCGTACCGTTGGCGGGAAC
CGTACGGTGTACGCAGTACAGTATACCGTGTTCATGATTGTTGGGTGAGA
TTTTGTTGTGTTCATTGCTTCGTAGGCGTGGGTCGGAGAATCGTAGAAGG
CCAAGGATTGGCAACGGAAGGCAGCCTCGCGCTTGACGGTCACCGCACCG
TGTGGATCGACCGTGCCGTGTAAAGGAACACGCACCGTGCTGTGGACAGA
CCAACATACGTCGTGCCCTTGGGGCCTGGTGGCCGCGCTGTTCAGTTTGA
CCCGGTTTGAGTTTGGTGGAGTGTTGCACTCTCGTCAGGTGGTTGATCAT
CCGTGTGGGTGCTGGTTTAGAACGACTTTTCGTTCCTCATATATTGTTTT
GAGTGTCTTGTCTTTACATGGATTTATTTTGGCCGTATCTTTTGCTTGGG
GGTATGCTTGACTTAGACATGTGTTGTTCGACCTCGAGGGTTGTCTTGTC
ATTTTCGATAACTTTATCGTGCATGTGTTGAGTAAGGAGCTTGATCTCTC
CCGGGGATGCTCTTGGTTCGGTGCGAGCGAAAATTAGTGGGTTACCTTCA
CTTGCTCCAGTGTATTCCGTCTATGAATTTCGTGGTAAGCATGTTCCTGT
CTACTTTGTTGGGTTCGGTTTGCCATGGAAGTCAACGTCTCTTTGATTTC
GTTCGGAAGTGAGGTGAGGGCAGGGGTTGGACATGTACCTCGGCAATGAT
TTACTTTTCTGTGAAGCCAAGGCAACATCGATCGGTGTGTCTGCCTTTTG
CTCCGCCCACGACTATCGGACAAGGCACCGACAGGGGTTTTCGCGAGTCT
GCACCGATGACTCCCCCCCAAAACCTGGGAGCGCCGCTGCTGCTGTGGCA
GCAAATAAACGTTCGGCCTTGTTCTATCGTGTCCTTCCTGCGGCGCTGAT
CTGGCAGCACTCAGATGTAGGCAGGCTTGATGCTGTGTGGGCGAGCGATG
GGGCGGTCTTGGGGGCACGACCCTACTGCCGGCAAATGGCACGTTCGGCC
GTTGGCTCGGGTAACCAACTCGAGTCTTTGGCACTACACATACCTGAGTA
TGATGCGATATCTTTTTTTTTTCTTAATGTAGCCGACATCGCCTCGGATA
ACCTAGGCGTGGGGTGGCACCCCAATTATGATCGTCTGCAACTTGTTTTT
GTTGTTTTGCAGAAAATGGCGTGCCGTTTTGATAGTGGTAAGTGTGAGTG
GTTGGGAGCCTTCCGCTGGTAGGTGGGGATTTTTTTCTCAAAAAGGGGCG
GAGTAGTTGTCATGAAAAGGGACAGTTTAGCCCTGCATTCGAAACGCGCA
CGCGTGTAGCAACGCGCGAAACTCATTCCTTGGCTCCCCTTTTGTGGCAA
CCTGGTGCCTCGCAGCCTCTGTGGAAAAAGGGGGTTAGTTGTTTCGGACA
GCTACATAGTGCACACCGTAGCTGACGTCAGCGATTGGATCAACTTGTGA
CCAGTGGTTGTTCGAGCCTCACAAGTGATTAAGCCACGCGTGTTGGCAGG
GGACGCCCGCAAAACTAGCGGCATTTCTGTGGTAGGCTTGTCGGGGTACC
ATCGAACATACCGTAGAGATGTCGTGCCGTCCTGTTTACAACCGTTTGAT
TCATCGCGTTTGTCAAGGGAGGGAGACGGCAGCATGTAGATTGGACCGAG
CCGGCTCCAACACGAGCTTGCTGATTTGTATGATATTGCTAAGAGCTCCG
GGAGCTTAATTAGCTTCGGTGTTTTTGGCAGCAGATGAAATGGGCACTCG
TTCCTCTGGCCGCCCAAACCAGTAAATGCAGAGACTTGCGCCTCACACTC
CCCATATGAGGGATGAGGGATGTTTCTTTTGCTTAAGGAGGGGGGGGTGG
CGGCAGCGCTTCCAAGGAGAAGTTCGTCGCAGTCTAACGTTGCCTGCACA
GTATTGGTCAACATACTTTTCGTTCGTTTTGCATGAGTTTTGTTTCTGTT
TTTCGTTGTCCGAAGAGGGAATGGCGATGTGGCGGGGCGCCAACGTCGAA
GCGCGTTATTTGAAAGTACAACGGTGTGCGTGGAATCTACTTCGTGTTCT
TATGATGGCTTGAAGATCAACTGG
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Coding sequence (CDS) from alignment at Scaffold_82:251943..256016+

>EsuBft961_2a-0001 ID=EsuBft961_2a-0001|Name=EsuBft961_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=270bp|location=Sequence derived from alignment at Scaffold_82:251943..256016+ (Ectocarpus subulatus male Bft15b)
ATGGTAGAGCGACGGAGGGCTCGGTCATCATCGTCGTCCGACCGGCGCGA
CGATGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGATTTCGATC
TTCCCAAGGACCTGGGGATAAGGACGTGGACCAAGGCTCTCACGAAGGAG
GAGAGGGCCAAGCGGATGACGGGGCTTAAGAGCAAAACCGCCATTCTCTC
CGTGCAGTGCGTCCTTGCTGCCAGGAGACCGGTGCCGGTGGTGGTCTACA
CGGCTAAACCGGTACAGTGA
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