EsuBft960_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft960_9a-0001
Unique Name	EsuBft960_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:1090764..1095234 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft960_9
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	201
Hectar predicted targeting category	other localisation
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a	EsuBft960_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 1090764..1095234 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a-0001	EsuBft960_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 1091073..1094502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a-0001-exon	EsuBft960_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1090764..1091102 +
EsuBft960_9a-0001-exon	agat-exon-42413	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1092630..1093256 +
EsuBft960_9a-0001-exon	agat-exon-42415	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1093766..1094056 +
EsuBft960_9a-0001-exon	agat-exon-42414	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 1094476..1095234 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a-0001-exon	agat-five_prime_utr-15316	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 1090764..1091072 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a-0001-cds	EsuBft960_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 1091073..1091102 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft960_9a-0001-exon	agat-three_prime_utr-23537	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 1094503..1095234 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:1090764..1095234+
coding sequence from alignment at Scaffold_242:1090764..1095234+

spliced messenger RNA

>EsuBft960_9a-0001 ID=EsuBft960_9a-0001|Name=EsuBft960_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2016bp|location=Sequence derived from alignment at Scaffold_242:1090764..1095234+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGGAAACAACCTCTGGCGATAAGGTGCTCGCGTATGCACGGAGTGTCGC
GCATCACAATAAGCAGCACAGAGGGTATTTCAGCTCTGTCTCGTGGTCAC
CACTACAAGCAGTTCGTGTGTACCATTTAGACAACAGCACGTACCCGACA
CCGAGCAACACAACAATTGACTGACGTCTCCCAGCGCCAGGTGCCTGCAA
CTTCAAGAATACCATTGGGATTCCCGAAGACAACCTTTCTCTATTTAGAG
GGTCTTGGGGTCCTTCTCGAGCTACTCCGTGTGGACATGCGTGTCCGGTC
ACTGCATACATGAAGAGAGAGCTAACAAGGTGCATGCAGGGGTACGTCAA
GGCCGTGTTCGACCTGATCGGGACGCTGCAGGAGCGCTGGGAGAAACACA
CAAGACTTGCCAAGGATGACGACCGCGACTACCACGGCGTCCAGGAAGCG
GTGGGCATCATTAAGATGCTGAAGACAGTGCCCGGTTTGGCGACAACGCC
AGCGGCGGGCGGAACCAACGAGGAAGCCATGGGGCTTCAGCTAAAGCGGG
GGATTGCCACCGTGGCTCGCGCGTTCGACGTATGGTGGGCTAGCCGCAAC
GAGTTCTCAGAGATGGTGAGAGCATGTAGAGGTTCGAATAAACAGTCGAC
GTTGGCCTGCCTACGTTTTATTTCGCAACAATGGCGAAGCTTTCATCATC
ATCAACTTCTACGTCGCCCGATCTCATTTCAACCGAACTCGTCGCAGCAC
ATCGTGGCCACCCTTCATCGGTCGATGGAGTTTGATGTTGGGCTCCAGAT
CGCCATGAACAACAGTGCGAGAGAAGCGGGGGGAGAACCCCACCACTCCT
CCTCCGCGTCGTCTTCCATGGCCGCACCAGACATGATGCGCCCCGCGTGT
AGTCTGGGCTACATTATTGGGATGGCGATGGAGAACATAGATACCGACCG
CAACGCCAATAGGACGGACCTTATGGAGATTTTCGATGGGGATGCGGAGG
CGGCGAGGGTGAACCACATTCACATCCACGGGATGGATGTATGGAAAGTC
TCGTGCCCGCACTACAACGTGCGGGTGAAGGCCGACCCTCTAGCAAACGC
CCTCGCGGTTGAGTACGGCCTCGACCTTGGCAAAGGCGATGCCGTCGCCC
TTTCCTGGCTTGAGAAGAGCCACCGGTGGCAAGAGGAGAATTATGTTGGC
ATCGGGGACTTCGTCAGTTCCGAGGAGCTCAAGGAGCTCGAGAAGCTCGA
GCGGGAGCGGGATGCCAACAAGGCAGCGAACTAACCGACCAGCGGAGCCA
CCGCCGCTGGTGCACCCTCGCCAGCTTCGAACGGCAACGCCGCGCGGTGG
CCGCTGTTGAACAGGCAAACGAACACCGAAATCGCCTCGGATGAGCTTGC
CGCCCGTGCTCTCGCTTCTCAGATTTACCAGGAGTTTCTCCTTAAGGAAA
AGAAGCAAGTGCAGGCAGACGAGGAATATGCGCGTAGCCTAGTTAGCGCT
CAACCCACGGAGCAGCAGGCCTCTCAGGCTGCCCAAAAGCGAGGCAGTGC
TGAAGAGGACGGCGAGGGATGGCAAACTGTGCGTAGGCCAAAGAATCGGC
AGAATCAGCCCCGGTCAAAGCCACGACAGCAGCCACCAAGGAAGCCCTAG
GACACTACAGTAACTCTTGAACGACACACGCCTAGTCGTCGAGATTGGTA
GTTCAATGCAGTGTTTTCTTACACCCCCCAGACTGTTTCCTACACAGTCC
GTAGATGTGCTTTGCACTTCGAAGCACGGCAGATGCAAGAACTAATTGTA
CCCTTCTCCTGTGCATTTAGGGAGGGAAATATGTTTTCTCTAGACCTGTG
TTTTGTCGAGTTTGTGCCAGGCTAGGCCGCTGAGGTGTCCGTGGTGCTGT
GCAATGCCACACTCTTGTCTAGGTGTAGACTATCATAACAGGGCGTGGAT
ATATTTGTTGCCCTGGATTATGCAACCCACGGTGTAAATGCGAGCAAGGG
TGTTCTCGAACATCGT

protein sequence of EsuBft960_9a-0001

>EsuBft960_9 ID=EsuBft960_9|Name=EsuBft960_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=324bp
MKRELTRCMQGYVKAVFDLIGTLQERWEKHTRLAKDDDRDYHGVQEAVGI
IKMLKTVPGLATTPAAGGTNEEAMGLQLKRGIATVARAFDVWWASRNEFS
EMVRACRGSNKQSTLACLRFISQQWRSFHHHQLLRRPISFQPNSSQHIVA
TLHRSMEFDVGLQIAMNNSAREAGGEPHHSSSASSSMAAPDMMRPACSLG
YIIGMAMENIDTDRNANRTDLMEIFDGDAEAARVNHIHIHGMDVWKVSCP
HYNVRVKADPLANALAVEYGLDLGKGDAVALSWLEKSHRWQEENYVGIGD
FVSSEELKELEKLERERDANKAAN

mRNA from alignment at Scaffold_242:1090764..1095234+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft960_9a-0001 ID=EsuBft960_9a-0001|Name=EsuBft960_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4471bp|location=Sequence derived from alignment at Scaffold_242:1090764..1095234+ (Ectocarpus subulatus male Bft15b)
TCGGAAACAACCTCTGGCGATAAGGTGCTCGCGTATGCACGGAGTGTCGC
GCATCACAATAAGCAGCACAGAGGGTATTTCAGCTCTGTCTCGTGGTCAC
CACTACAAGCAGTTCGTGTGTACCATTTAGACAACAGCACGTACCCGACA
CCGAGCAACACAACAATTGACTGACGTCTCCCAGCGCCAGGTGCCTGCAA
CTTCAAGAATACCATTGGGATTCCCGAAGACAACCTTTCTCTATTTAGAG
GGTCTTGGGGTCCTTCTCGAGCTACTCCGTGTGGACATGCGTGTCCGGTC
ACTGCATACATGAAGAGAGAGCTAACAAGGTGCATGCAGGTGAGAAAAGC
TGAATGATTTTACCCTCCAGAATATTCACGCCTGATGGCAAAAACATCAC
AGTCTATTTCAGGAGCGGATTTTGATACTATCCGCCTTCCTAAGCCAACG
CCTTCGAACACATGTTGGATACTCTTCCTCACACATGACATCCACCCCCA
AGCCTCAGCTGTCACCCCACAGCCCTTATATTCCCCCGACAAACGCAGAT
GGCAGCTTCATGCGGTCGTCACCTTTTGGGAGCGAACGACGGTACTTCAA
GTCGGCATGACAAACCAACTCTCTGCGGCTTCGCGAAAAACCTCCTGGAA
GGGGACAGCGAAGACAAAACTATAGACTATATGTAACCTGCACCACTCCA
TCGAATACCGCCCCCGCAAGCACGGACGAATTGAGCTCCTTCCAGCTGCA
GTTGGGAGACCTCTGAATGTGTTGATGAACAGCATATCCACTCTATAGGT
ACAACCCAGCGAAGAAAGGAGGATACACCGCACATCCACAGTGCGACAAA
AGTAGACTTTAACCGAGGTTCCGTTATTTAGATGTAGTCTACGGCATATT
CACTTTGCTGCAAATCAGCGCTGGCTTCTAGCATGGTAGATATGCTGTAC
ATCTAACACGACCGCGTCACGATCCTAAAAGCCACATGCAAAGCGCGGTT
CAGTTGATGGTGCCGACGACCCTAACAATGATACAGACACCCCAACTCTT
GACTCCCTCGGGTGGCTGGTGCCGAGCATAAACAGCATATTTTTGTCGTG
CATGCGGCTGTGCATGTGGTACCCCCCCGCCCCCCGCGGGAACATGAACC
GTGACGGGGTCGATATTCCGGCCTGAGGGCTTGTGTCTCCAAACTCGAGA
GAGAAACCCCCGAAGTGGGGCAGCGGTAAGCAGACGCCAATGAACATCCT
CGTCACCTCTGCGACGAAATCCAGCGCATCCTGCATGTGTCATAAAATGG
GGGCGTGATGCAACAGTTCGACGGCCGATGGAGGTGAGACGGCTACCCGA
TGTACTGCGGGCATCGCAAGTCCCGATGCAACAGTCCTGAATTGTTGAAC
ATGAGATACATAATGTGTCAATACGTTCCATTATCATTTACCACAGGAAA
CATGTGGTCGCGGGTATCTAATGGTTTTCTACCCATGGCCACCTCAAGCA
TTATCGTCATACAGTGGATATTTTCTCTTGCGTTGCGTTCCGACGAGGTA
GTTTGGCCCCGTGGGGCGCAATAACCGTCGACAACAAACCATTGTCCCCG
TAAAGTACTTGCCAGTAAAACTCCCTCGCGCTTGCTCCAGGAAACGCTGA
AGCCGGCCTTGGCTTCGGGGTGCACTGAAGTGGCCACGCTAGTCTTCTTT
GACGTGGCATTTCCCACATACGAGACTATCATGAACCGAGGTCACGACTG
ACACCGCCGCTACAAAACGACTCGTCGAGCGTGGATGGTGAATATGTGCA
CCGCATGTTTATCCCTTTCCCCCTCGCGCCGTCGCCCCCGTTGCCTCCAC
CCCCACTTCATTGCAGGGGTACGTCAAGGCCGTGTTCGACCTGATCGGGA
CGCTGCAGGAGCGCTGGGAGAAACACACAAGACTTGCCAAGGATGACGAC
CGCGACTACCACGGCGTCCAGGAAGCGGTGGGCATCATTAAGATGCTGAA
GACAGTGCCCGGTTTGGCGACAACGCCAGCGGCGGGCGGAACCAACGAGG
AAGCCATGGGGCTTCAGCTAAAGCGGGGGATTGCCACCGTGGCTCGCGCG
TTCGACGTATGGTGGGCTAGCCGCAACGAGTTCTCAGAGATGGTGAGAGC
ATGTAGAGGTTCGAATAAACAGTCGACGTTGGCCTGCCTACGTTTTATTT
CGCAACAATGGCGAAGCTTTCATCATCATCAACTTCTACGTCGCCCGATC
TCATTTCAACCGAACTCGTCGCAGCACATCGTGGCCACCCTTCATCGGTC
GATGGAGTTTGATGTTGGGCTCCAGATCGCCATGAACAACAGTGCGAGAG
AAGCGGGGGGAGAACCCCACCACTCCTCCTCCGCGTCGTCTTCCATGGCC
GCACCAGACATGATGCGCCCCGCGTGTAGTCTGGGCTACATTATTGGGAT
GGCGATGGAGAACATAGATACCGACCGCAACGCCAATAGGACGGTGAGTT
GCTGTTGCTGTTGCTGACATGGTCATTCTAACGGTGGTGTAGGTTTCTCC
CTCGTTGGTGTTGGTATTGCTGGTGCTGGTGTGTCGGTGGTATGGTACCA
CTGTTTTCACATAAAGAGGCGATGCCTTGGTACCGCCACACGCGAGCACA
AGCACCGCACAAAACAGTTAGCGTTCAATCCAGGACCCCGCAGGTAGACA
AAATACATAGTGCTTGATGCAGGTCATTTGCTTCTGGATAAGCGACGGAA
CTACAGCAAAACTTTTGCCACATGCTTCGCTTGTTGCCGCTCTCATCCGC
TTGAAAGCTTGACCCTGACCCCTTGGCAGCAATCCAGATATACGGCAACA
ACAACAAACGGTAGTTGGATGAAGCTTGAGCGATTGGGGATGTATATGTG
TTTCGTCTACATGGTTTGTTCATCCAACACCTTATTCAAGAAGAATCACC
ACCCTCATCCACCTGCGAACCCAACCTCCGATTCACAACTACGCCACAAC
AGGACCTTATGGAGATTTTCGATGGGGATGCGGAGGCGGCGAGGGTGAAC
CACATTCACATCCACGGGATGGATGTATGGAAAGTCTCGTGCCCGCACTA
CAACGTGCGGGTGAAGGCCGACCCTCTAGCAAACGCCCTCGCGGTTGAGT
ACGGCCTCGACCTTGGCAAAGGCGATGCCGTCGCCCTTTCCTGGCTTGAG
AAGAGCCACCGGTGGCAAGAGGAGAATTATGTTGGCATCGGGGACTTCGT
CAGTTCCGAGGAGCTCAAGGAGCTCGAGAAGCTCGAGCGGGAGGTGAGAA
AATAAGCTACAGATACGCTAGTCGCCAGGTCGCTTTGTGTCTTCAATGTC
CTGTTGAAATGTCCACTTGTTCTGTGGTTCCTCTAACCCCTACACTCGAG
GTTGCTGAGGGCGTCCCGCAATATCTTGGAACTCAGCACCTCTTCGACTG
TCCCGGCATCTCATCTACCACACTAATCTACAGTTTGCCATGAATACTTC
GCCCTCCGTCGTAACCACACTCCTCTGGCTCTCGATAGATGACATGGCAC
CAAGCAATGCGAAAGAGCAGAGCATCCTTCTACGCAACGCCGTGCATCTA
AACTCCTCTCGAAATGCGCGTCGCTGTTGCTTGTGTTCGTTGTGCACCGT
GCACGTGCATGTCTTCTACCTGTTGCCGGCCTGGATTCAACATCAACGAA
ACGTCGTATCAGCGGGATGCCAACAAGGCAGCGAACTAACCGACCAGCGG
AGCCACCGCCGCTGGTGCACCCTCGCCAGCTTCGAACGGCAACGCCGCGC
GGTGGCCGCTGTTGAACAGGCAAACGAACACCGAAATCGCCTCGGATGAG
CTTGCCGCCCGTGCTCTCGCTTCTCAGATTTACCAGGAGTTTCTCCTTAA
GGAAAAGAAGCAAGTGCAGGCAGACGAGGAATATGCGCGTAGCCTAGTTA
GCGCTCAACCCACGGAGCAGCAGGCCTCTCAGGCTGCCCAAAAGCGAGGC
AGTGCTGAAGAGGACGGCGAGGGATGGCAAACTGTGCGTAGGCCAAAGAA
TCGGCAGAATCAGCCCCGGTCAAAGCCACGACAGCAGCCACCAAGGAAGC
CCTAGGACACTACAGTAACTCTTGAACGACACACGCCTAGTCGTCGAGAT
TGGTAGTTCAATGCAGTGTTTTCTTACACCCCCCAGACTGTTTCCTACAC
AGTCCGTAGATGTGCTTTGCACTTCGAAGCACGGCAGATGCAAGAACTAA
TTGTACCCTTCTCCTGTGCATTTAGGGAGGGAAATATGTTTTCTCTAGAC
CTGTGTTTTGTCGAGTTTGTGCCAGGCTAGGCCGCTGAGGTGTCCGTGGT
GCTGTGCAATGCCACACTCTTGTCTAGGTGTAGACTATCATAACAGGGCG
TGGATATATTTGTTGCCCTGGATTATGCAACCCACGGTGTAAATGCGAGC
AAGGGTGTTCTCGAACATCGT

Coding sequence (CDS) from alignment at Scaffold_242:1090764..1095234+

>EsuBft960_9a-0001 ID=EsuBft960_9a-0001|Name=EsuBft960_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=975bp|location=Sequence derived from alignment at Scaffold_242:1090764..1095234+ (Ectocarpus subulatus male Bft15b)
ATGAAGAGAGAGCTAACAAGGTGCATGCAGGGGTACGTCAAGGCCGTGTT
CGACCTGATCGGGACGCTGCAGGAGCGCTGGGAGAAACACACAAGACTTG
CCAAGGATGACGACCGCGACTACCACGGCGTCCAGGAAGCGGTGGGCATC
ATTAAGATGCTGAAGACAGTGCCCGGTTTGGCGACAACGCCAGCGGCGGG
CGGAACCAACGAGGAAGCCATGGGGCTTCAGCTAAAGCGGGGGATTGCCA
CCGTGGCTCGCGCGTTCGACGTATGGTGGGCTAGCCGCAACGAGTTCTCA
GAGATGGTGAGAGCATGTAGAGGTTCGAATAAACAGTCGACGTTGGCCTG
CCTACGTTTTATTTCGCAACAATGGCGAAGCTTTCATCATCATCAACTTC
TACGTCGCCCGATCTCATTTCAACCGAACTCGTCGCAGCACATCGTGGCC
ACCCTTCATCGGTCGATGGAGTTTGATGTTGGGCTCCAGATCGCCATGAA
CAACAGTGCGAGAGAAGCGGGGGGAGAACCCCACCACTCCTCCTCCGCGT
CGTCTTCCATGGCCGCACCAGACATGATGCGCCCCGCGTGTAGTCTGGGC
TACATTATTGGGATGGCGATGGAGAACATAGATACCGACCGCAACGCCAA
TAGGACGGACCTTATGGAGATTTTCGATGGGGATGCGGAGGCGGCGAGGG
TGAACCACATTCACATCCACGGGATGGATGTATGGAAAGTCTCGTGCCCG
CACTACAACGTGCGGGTGAAGGCCGACCCTCTAGCAAACGCCCTCGCGGT
TGAGTACGGCCTCGACCTTGGCAAAGGCGATGCCGTCGCCCTTTCCTGGC
TTGAGAAGAGCCACCGGTGGCAAGAGGAGAATTATGTTGGCATCGGGGAC
TTCGTCAGTTCCGAGGAGCTCAAGGAGCTCGAGAAGCTCGAGCGGGAGCG
GGATGCCAACAAGGCAGCGAACTAA