EsuBft960_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft960_3a-0001
Unique NameEsuBft960_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1029583..1034533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPW5
ProteomeIdEsuBft960_3
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsSignalP-TM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsIPR023222
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length153
Hectar predicted targeting categorysignal peptide
Evalue3.05e-154
EggNOG OGs2E2BQ@1|root,2S9JQ@2759|Eukaryota
Ec32 ortholog descriptionPsbQ-like domain
Ec32 orthologEc-15_001890.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3aEsuBft960_3aEctocarpus subulatus male Bft15bgeneScaffold_242 1029583..1034533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3a-0001EsuBft960_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1029622..1033781 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3a-0001-exonEsuBft960_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1029583..1029839 +
EsuBft960_3a-0001-exonagat-exon-42362Ectocarpus subulatus male Bft15bexonScaffold_242 1031561..1031675 +
EsuBft960_3a-0001-exonagat-exon-42361Ectocarpus subulatus male Bft15bexonScaffold_242 1032450..1032725 +
EsuBft960_3a-0001-exonagat-exon-42363Ectocarpus subulatus male Bft15bexonScaffold_242 1033650..1034533 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3a-0001-exonagat-five_prime_utr-15312Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 1029583..1029621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3a-0001-cdsEsuBft960_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1029622..1029839 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_3a-0001-exonagat-three_prime_utr-23531Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1033782..1034533 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft960_3a-0001 ID=EsuBft960_3a-0001|Name=EsuBft960_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1532bp|location=Sequence derived from alignment at Scaffold_242:1029583..1034533+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCATACGTACCCCACGCGCCGATCTCTCCCTGCTCTCTCATGAAGCTCGG
AAACTCGTCGGCAGCCGTATCCTCGTTGGTCTTTCTTCTACGTGTTGCAG
CGTCGGGAGTCCACAGCTTCGTGCTTCGTCCCCATGCTATCGCGTCAGCA
GCACCGGCAAATTGCGGCGCAATCTCGTTCGTACGAAAACAACATGCTCC
GGCAGCAAGAGCAGCAGCAGCAGCAGGAGTAGGGCCAGACCCTTCTAGCA
GAAGCAGGGCCACCAGGATGACGACTGGCGCCCTGCCGAGTGACGGCGGC
GGGATATCGCGAGGCGAATGGGCCGGTAGAATGCTAGGAGTTGCCATCAC
GGGCGCGGTGGCGGTATCACAGGGACCGGAGTTTGCCTCGGCCGAGGTAG
GCGTAGGAGAAGGGGGGCTGCCGGACGGGGCGCGGCAATTCTCCAACCTC
GTCAAGGTGCAGAAGGACTGGGCGGCCCTGGGCAAGTCGATCGAGAGCCA
GGGCGCGGACGTGACCGCCGACGAGTGGAAGAACGTGGCCCTCTTCCTCC
GCAAGGTGTATCAGCTCGGCGGGGAACTCGAGTACCTCGCGGGCACGTTC
CCGCCGGACAAGAAGAAGTCCGCCCTCGCCCTCGTGCGGAGCATCCAGAA
AGAGGTGCAGGCGGCGGACGTGCCTGCGAGAGAGAAGGACGCGGCTGCCT
TCATGAAGGCGCAAGCTTCCGTGCAGAAGAAGTTCGAGGATTTCATGGAG
CTTTTTAACGACGTACCGTCCGAGCTTTGAGATCTGCTGACGTCATCGCC
GCTGCTACGGCAGAAGCTGCTGCTGCTGCTAGTGGGGGTTAGAATAAAAC
GGTAACCAAGAGGTACAGGTATTGTGTCCATATAGAAGCAGTTTCGTTGA
CCGGTGGATAAATTCGTCGGGAGCATTAGCTTCGAAGGGAATCGTACGGT
AACGGAAGGGTAGATAGATATGTTCCAGCAGCATATACTCAATTAAGCAC
GTTTATGACGCCACATCCATTCTGGTTGTTGGAGATCTAGAGGTCCGTGG
AGACTCAAGAATTACGCCCATCCCCGATCCGATGGACTGCCTTTGGCATC
ATCGGCAAGTAGAGCATGGGGTTGGTCGACAGAGCAGACGCGAGCAGGTG
TCGAGTTCATGGGACAGATGTCGAGGTCATGGGAAATCATGGACGAGGGG
GATAGAAGCTCCGGGGTCTACTGCCGAATGACACATACATCTGGAACTCC
GTGGGACCACGCGTAGGGTGAGATTTGGTTGCCGACCTGATGAGAATAGC
ACAGCCCATTGTTTTATATCAGCAAGATTTTTCGTTTGTAGAAGGCCCTA
GTACGGGGCGAATTCTACGAGTGTAGTGGCATGTAGAAAATGCTGTAATG
AGTTGTTTCACTTTTCTTCGTGTGCCTGGTTTTTGCTCATGCAATGAACG
TCCCGTTACGATGCTAGCCGTTGGTCGCTCCGAACTGCTGCGGGAAACCA
GTGGTACACACGCAACAATACAAAACACGTAC
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protein sequence of EsuBft960_3a-0001

>EsuBft960_3 ID=EsuBft960_3|Name=EsuBft960_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=246bp
MKLGNSSAAVSSLVFLLRVAASGVHSFVLRPHAIASAAPANCGAISFVRK
QHAPAARAAAAAGVGPDPSSRSRATRMTTGALPSDGGGISRGEWAGRMLG
VAITGAVAVSQGPEFASAEVGVGEGGLPDGARQFSNLVKVQKDWAALGKS
IESQGADVTADEWKNVALFLRKVYQLGGELEYLAGTFPPDKKKSALALVR
SIQKEVQAADVPAREKDAAAFMKAQASVQKKFEDFMELFNDVPSEL
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mRNA from alignment at Scaffold_242:1029583..1034533+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft960_3a-0001 ID=EsuBft960_3a-0001|Name=EsuBft960_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4951bp|location=Sequence derived from alignment at Scaffold_242:1029583..1034533+ (Ectocarpus subulatus male Bft15b)
GCATACGTACCCCACGCGCCGATCTCTCCCTGCTCTCTCATGAAGCTCGG
AAACTCGTCGGCAGCCGTATCCTCGTTGGTCTTTCTTCTACGTGTTGCAG
CGTCGGGAGTCCACAGCTTCGTGCTTCGTCCCCATGCTATCGCGTCAGCA
GCACCGGCAAATTGCGGCGCAATCTCGTTCGTACGAAAACAACATGCTCC
GGCAGCAAGAGCAGCAGCAGCAGCAGGAGTAGGGCCAGACCCTTCTAGCA
GAAGCAGGTTTGGATCGCAGTTGCCTCGCTTTAATTGTCGATTGTTCGTG
GAAAGGGAGTGTTTCCCCCCTGTGTGTATAGATCATTGCGTGCAGCGACC
AGGAGAGAGAGACTGCCAAAGCTTGAAGGCGACAGGGAGTACAGGACTCT
TACGTTCCACGCCCGGAACATAACTTCGCACCGGGTGGACACAACTAGGA
GCATCAGGTATCGGCCACGTTGAATCTCTCACTTTCAATGTGACTTGAGC
CCAACGTTCCTGTATGTGATGACCTCAAGCTCGTTCGCAGTGCCGGTGCT
TGGAGCTACATGAGTATTTCGACTTTTTTTTCTATCTACGGCTGCAGCTG
CTCCAATTCGTACATTAGTCACACAAGATGGGTTCTCCCTCCAACCCTCC
TGCGGTGCTTGCCTTCGGTTTGTTTTGCGGGGAAGTTGTAGCACTCTCTT
CCCTCAGGCGTTGAAGATTGATGTTCTTTTGGAGTGCCGAACAACACTTC
TAAATCTTAACAGTGGTACAATAGCATATCAAACAGAGAGCAAGGCGACA
CATACCCGCATGCCAAAAGCCCCCTACCAACTGTTTGTACGACGCATATC
CGCAAGCCAAAGGGGAAGAAAGCCTCAATCGATTAGCCGGGGCACCCGGT
GAATGTGTCCGATGAATAAATGGTTTCCTCCTTGGTCGAATGTAACAACT
GCCACAGTTTGGCCACACTCACCGAAACTGCCCGGGCTTATCGATAGGGG
AGTTCCTCGTCTTCGGCATGTGGACATTTGTCCAATGGATACATGTTCTC
CACCGTTTCGATTCGGTAGGAGTGGTTTTCGGTTTTCGGCACTTGAAATT
TGCCGTTTCGATGGGGGGTGGGGCGGGGGGGAATGTCTCTTTTGGGAAAC
TCTTTGTCGGCAATCATGCCAAAACGTGTTTGAAGAATCAAGAATCCAAA
GACGGCATGCCGGTACATGAGATTGGTGGAAAGTGGTGGCTGCTGGATCA
CAAGGGTCGGGTATGATCCGGGGGGTCACAGGGGAAGAGCAGCCGAGAGC
GCTCCCATTAAGTGAGCAATCTTGTTCGCTAGCAGCGTTTCGCAGTCGAC
CATTGTTGTGATGCGATTGGAGGAGACATGGATGTATGGAAATAAACAGA
CGTCAATGCCACCATCGAGTACCAGAACGTCTCAAGCCCCACGAAGAATT
TTTGAGGCACCGGACTTGAACGTGAGGGAGGGAGTGGATACAACCGCCGC
GGGAAGTGATGCCACTGTTGTTTGATCCTACTAGCTGTGAAGAAGGACTG
ACATGAAAATGCGCTTATATTCACGATGATTCGGGTTTTTTCGCGAGGTT
GGCTGCTGTCAACTTTGTCAACTGCGTGTGTATGGGGCATGGATGCAGCT
GCTCCACAACTGTATTGAGCGAGCCGCTGTGACAATGCTTGTGATGTGTT
TGGTTTCGGTGGTGGGGGTGTACCTGTCTTTGACTTGGCAACCAGTGGGC
GCACCGCGTTCGTGCGTGCTTCCTTTGAAGCTTTGTAGTGGGCAGGGCAG
CTTCAGCGCCTCAAGCTCATCGTCCTTCAATCCCGTCGTTCCTGTACGCC
AGCCCGCTCGTCGAGAGAAAGGTGTCCCCCCGAACCGCGGGGCCTGTGTC
TTTTTCTGGTGGACGACGGCCGACTTCCTTCGTTTTCCTCGCGTGTGAAC
CGTTTCTTCGTTTACGTTCTCCCTGCAGGGCCACCAGGATGACGACTGGC
GCCCTGCCGAGTGACGGCGGCGGGATATCGCGAGGCGAATGGGCCGGTAG
AATGCTAGGAGTTGCCATCACGGGCGCGGTGGCGGTATCACAGGTGTGAG
GGTCAGTCAAGTCAGGCCGGAGTGCACTCAAGATACGCTTGTGTGTTTTT
TGGCACCTTGCGACGACACAAACGTTACACGGCTTGTGCCGGCACGACAG
GTCCAGGCGTGTTGGTCGTGCTCAGCATGAACGCACACATGGTTTCCGAT
GCAAGGCTTTCATTCATAGGACGGATCAGATCCCTACAGATCGAGCCACC
TCTTTTGAGGGTTGTGTCCCTGTTGATCTGCAGGACATAGATGATCGGGG
TACGTTCGCTCCATGGTGATCTGAAGGATATTGGTGATCGGGGTATGTTC
GCTCCATGGTGATGTGAAGGACACACGTGATCGGGGTATGTTTGCTCCAT
GGTGATCCAAAGGACATACGTGACGGGTGTATGTTTGCTCCATGGTGATC
GGTGGAACATACACGCAAGTGAGCTAGCTCTCGATCTGTGTTACGTGCGA
AGCTTTTCACCGCGGTTCGTGCAGACAAGCACCAAACGGTACAAGTAACA
GCGTACCGCCCTTTCGAGATCGTCACGTGCTGATGTTCAGTTGCCTGGCA
AGTCAGCAACCGACACGTACCCTCCTCGCAATACCCACGGTACATGGTAC
GTGAGTGCATCCACTTCCCGAACGCGTCGTCGCCTTGAGGCTCGCTCTCC
TGAGGGTAGGGGGTGCTGGGAATGCGATCCTCCACCGCCGATCTCTTCAA
GACCCCGCCGCCGCGCAGCGGTGCCCACCCATGACTTATTTTTTATTTTC
ACGACCCAATGGAGCAGGGACCGGAGTTTGCCTCGGCCGAGGTAGGCGTA
GGAGAAGGGGGGCTGCCGGACGGGGCGCGGCAATTCTCCAACCTCGTCAA
GGTGCAGAAGGACTGGGCGGCCCTGGGCAAGTCGATCGAGAGCCAGGGCG
CGGACGTGACCGCCGACGAGTGGAAGAACGTGGCCCTCTTCCTCCGCAAG
GTGTATCAGCTCGGCGGGGAACTCGAGTACCTCGCGGGCACGTTCCCGCC
GGACAAGAAGAAGTCCGCCCTCGCCCTCGTGCGGAGCATCCAGGTTTGTG
TTGATTGTTTGCATCGACCGCGATGACCGGCCGGCTGACCAATGACAAGA
CGTCAGTCTTGTGGCGGGATACAAAACACGAACGAAGACGATTTCTAAGC
ATCAAATGGTTCCAGCGGACACGGGGGGCAAAATGTCCTGCTTCGGAAGT
GCAGTGAAGGACCCAATACTCTAGTGTCTGTGGTTCTTTCCGCATCGAGC
TCTACACGCGCCGCCGTAACCTCCCTTATTCGAGTTGATGTCTTGGGGCC
AGCTCTTGCTGCCGTGTCCAGATGAATGCGCGCGCCAGGTTACACAGATG
CCCACCACATTTTTGCGGGAAACGCTGGGTAGATGAGACATTGGTTGCCT
CTCCTATGTCCGCGTCCAAACCATCGGCGTTGCAGCTGTCGATATGGAGC
GTGTTCGACAACTGTGTCGCCGGCAGAAGAGCTGCAAACACCTTGACTCG
TGCACGATGATCCATCGCGGGAAGGATTGAGGGATATTTCGATGTTTCCC
CTCCCCCCCCCCCNTACGCCCGCCTGTTGTAAAATGAAGTAGTGGAATAG
TCGGGGCACCGTGATTCGAAGAGAAGTGGAGATGGCGGGGGTACTGGCCA
AAGAGTTTAGTATTGCCTACCCCTTGGCCTATGTGTATTTTGGAAGCCTG
GAAGCCGTATGTGTATGTCCTCATGCGACCGTGTGACACCATGAACGAAG
AGTCAGGTACAGGCACTTGCAGTGCTAGTGGGAGCTTATTGGGAGCTGAA
TCACGCGCCNCCCCCCCCCCCCCCTGTGACACGTAGCCTGTGCCCCCGAA
AACTAGGCATTTCGCTCCGTCCCGACGTTGTAGGGATGCGAGGTCAATCG
TCTAATACGATTGCGACATGCATTTACATGAGCATACTTCCCCCTCCCCC
CCGACATGGCCTTGTAGAAAGAGGTGCAGGCGGCGGACGTGCCTGCGAGA
GAGAAGGACGCGGCTGCCTTCATGAAGGCGCAAGCTTCCGTGCAGAAGAA
GTTCGAGGATTTCATGGAGCTTTTTAACGACGTACCGTCCGAGCTTTGAG
ATCTGCTGACGTCATCGCCGCTGCTACGGCAGAAGCTGCTGCTGCTGCTA
GTGGGGGTTAGAATAAAACGGTAACCAAGAGGTACAGGTATTGTGTCCAT
ATAGAAGCAGTTTCGTTGACCGGTGGATAAATTCGTCGGGAGCATTAGCT
TCGAAGGGAATCGTACGGTAACGGAAGGGTAGATAGATATGTTCCAGCAG
CATATACTCAATTAAGCACGTTTATGACGCCACATCCATTCTGGTTGTTG
GAGATCTAGAGGTCCGTGGAGACTCAAGAATTACGCCCATCCCCGATCCG
ATGGACTGCCTTTGGCATCATCGGCAAGTAGAGCATGGGGTTGGTCGACA
GAGCAGACGCGAGCAGGTGTCGAGTTCATGGGACAGATGTCGAGGTCATG
GGAAATCATGGACGAGGGGGATAGAAGCTCCGGGGTCTACTGCCGAATGA
CACATACATCTGGAACTCCGTGGGACCACGCGTAGGGTGAGATTTGGTTG
CCGACCTGATGAGAATAGCACAGCCCATTGTTTTATATCAGCAAGATTTT
TCGTTTGTAGAAGGCCCTAGTACGGGGCGAATTCTACGAGTGTAGTGGCA
TGTAGAAAATGCTGTAATGAGTTGTTTCACTTTTCTTCGTGTGCCTGGTT
TTTGCTCATGCAATGAACGTCCCGTTACGATGCTAGCCGTTGGTCGCTCC
GAACTGCTGCGGGAAACCAGTGGTACACACGCAACAATACAAAACACGTA
C
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Coding sequence (CDS) from alignment at Scaffold_242:1029583..1034533+

>EsuBft960_3a-0001 ID=EsuBft960_3a-0001|Name=EsuBft960_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=741bp|location=Sequence derived from alignment at Scaffold_242:1029583..1034533+ (Ectocarpus subulatus male Bft15b)
ATGAAGCTCGGAAACTCGTCGGCAGCCGTATCCTCGTTGGTCTTTCTTCT
ACGTGTTGCAGCGTCGGGAGTCCACAGCTTCGTGCTTCGTCCCCATGCTA
TCGCGTCAGCAGCACCGGCAAATTGCGGCGCAATCTCGTTCGTACGAAAA
CAACATGCTCCGGCAGCAAGAGCAGCAGCAGCAGCAGGAGTAGGGCCAGA
CCCTTCTAGCAGAAGCAGGGCCACCAGGATGACGACTGGCGCCCTGCCGA
GTGACGGCGGCGGGATATCGCGAGGCGAATGGGCCGGTAGAATGCTAGGA
GTTGCCATCACGGGCGCGGTGGCGGTATCACAGGGACCGGAGTTTGCCTC
GGCCGAGGTAGGCGTAGGAGAAGGGGGGCTGCCGGACGGGGCGCGGCAAT
TCTCCAACCTCGTCAAGGTGCAGAAGGACTGGGCGGCCCTGGGCAAGTCG
ATCGAGAGCCAGGGCGCGGACGTGACCGCCGACGAGTGGAAGAACGTGGC
CCTCTTCCTCCGCAAGGTGTATCAGCTCGGCGGGGAACTCGAGTACCTCG
CGGGCACGTTCCCGCCGGACAAGAAGAAGTCCGCCCTCGCCCTCGTGCGG
AGCATCCAGAAAGAGGTGCAGGCGGCGGACGTGCCTGCGAGAGAGAAGGA
CGCGGCTGCCTTCATGAAGGCGCAAGCTTCCGTGCAGAAGAAGTTCGAGG
ATTTCATGGAGCTTTTTAACGACGTACCGTCCGAGCTTTGA
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