EsuBft960_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft960_2a-0001
Unique NameEsuBft960_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:1024249..1029366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LPW4
ProteomeIdEsuBft960_2
Protein domainsPTHR13773
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsIPR000374
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notephosphatidate cytidylyltransferase os:haemophilus influenzae (strain atcc 51907 dsm 11121 kw20 [Automatic annotation]
Nb exon6
Max annot lvl2759|Eukaryota
Length1669
Hectar predicted targeting categorysignal peptide
Evalue1.28e-232
EggNOG OGs2D098@1|root,2SDA9@2759|Eukaryota
Ec32 ortholog descriptionPhosphatidate cytidylyltransferase
Ec32 orthologEc-15_001900.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionCytidylyltransferase family
COG categoryI
Cross References
External references for this mRNA
DatabaseAccession
GO0016772
GO0006629
GO0003333
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft960_2aEsuBft960_2aEctocarpus subulatus male Bft15bgeneScaffold_242 1024249..1029366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_2a-0001EsuBft960_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 1024760..1029366 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_2a-0001-exonagat-exon-42358Ectocarpus subulatus male Bft15bexonScaffold_242 1024249..1024885 -
EsuBft960_2a-0001-exonagat-exon-42359Ectocarpus subulatus male Bft15bexonScaffold_242 1026083..1026519 -
EsuBft960_2a-0001-exonagat-exon-42356Ectocarpus subulatus male Bft15bexonScaffold_242 1026774..1026850 -
EsuBft960_2a-0001-exonEsuBft960_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 1028300..1028543 -
EsuBft960_2a-0001-exonagat-exon-42360Ectocarpus subulatus male Bft15bexonScaffold_242 1028867..1028988 -
EsuBft960_2a-0001-exonagat-exon-42357Ectocarpus subulatus male Bft15bexonScaffold_242 1029215..1029366 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_2a-0001-exonagat-three_prime_utr-23530Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 1024249..1024759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft960_2a-0001-cdsEsuBft960_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 1024760..1024885 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft960_2a-0001 ID=EsuBft960_2a-0001|Name=EsuBft960_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1669bp|location=Sequence derived from alignment at Scaffold_242:1024249..1029366- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTACGCGAGAGGCTTCTGACGGCTGCGGTGGCCCTACCGCTGGC
CCTGTGGGCCATTTTCCATGACGCCTGGCTGTGCCTTTCCCTGGTTCTAG
TGCTACAGGCGGTTTGCGTGCAGGAGGTGGGCGAGCTTCTCCGCAGAACA
AGGGCCGCTCGAGCAGTAGCTGCCACGGGCGTTGGGGCGGGTTTGCTGGG
CAGCACGTTCCTCTTCCACATCATCGCCGAGACGATTTCTCTAATCACCG
CGTTCTGTGGCCGCGACGCTGCAGGGATCGCGATGTGCGTCGGTATGGCT
TTAATTGTGGCCCGCCGCCTGGTGCTCATGCGTGACCACTGGGCTGCTTC
GAACCTATCCGCGGAGAAACCGGTTTGGGTTGGCGGGAGGGGCGGTGATG
GTGGGGAAGGGGATGGCGCTGGGGTGATGGAGGCTGGAGTTTTCCTGCTG
GCCCTCGAAATTTCTGCGATGCTTTGGCTGGTCTGTGGCTGCTCCTCACT
TGTAGCGCTTCGATTCAGGGGCTCAAGAGGCGCTGCAGATGTTCTTTTCC
TCCTGGCGGTTGTGTTTAACTCGGACAACGGAGGGTTGCTGGCGGGCTCC
ATGTACAAGGCTCTTCGACGAAAGCGGCAGCTGCACCTTCCCAGCAGCGA
GCTTCTCCAACGACGCAAACGATCGTCTGCGAGTCAAACACCGCCGGCCG
CCACTGGTGCCGCCGAGATGACCCCCGGGAAAAAACAGCCAGGTCTCCTC
ACCGTCGCGAGTCCCGGCAAAACCTGGGTAGGCGTCACTGGATCCATCGC
CCTGGGAACGGCCACTGCCCTGACTCTGGAACAGGCTCTTCTCTTTCTGT
TGCATGGAACGTTGCTGTCGAAAGTCGGGGAGAGTCTCCCGGGCGAGGAG
GAACGAGGGGATGTTTTGTCCGTCGGGGGCATGTCATCCGGGGGCCTCGG
CGTTGTAGGGGCTGGCCTTTGCGTCGTGGGCGTCGTGGGGGATTTATGGG
AGTCTCTGCTGAAGCGAACGGCGATGGTAAAGGATTCCGGCACGGTCTTT
CCTGGCCACGGGGGCTGCCTGGACCGTCTGGACGGTGTCTTGGCAGCAGC
ACCGCTATACTTGGCTGTGCTCGCGGCGTTTGGGTTGTCACCAGTAGATG
AGCCATAGATGTGGCAGCTGATGTTCGCACACGGTAGCAGTGTTTAACTG
GTTTTAACATTACGTGCGACGCAGAATGTCCCTCGCCGCTTACCCACACG
TGCATGACCTCCACTCCCGTAGTACCCGGTGTTTTGTTTCGGCGTCATGA
TGCGGAGGCCACGACTGACAGCTTTCATCGCACAGGTGATGATTCTGAAA
AGTTTCCTATTGTCATTTGGTAGCTTGCGCCACGTGATTTCCTGGTCGCC
CTCAAGCGGCAAGTGCTCACCGGGAGAAGAACGGTGAATGGCCAAGCGAC
GTTTTTTTGGAACCACGTACCCAAACGCAACGGCAAACCAACGTCATGTC
GAGGAAGAATACGATCAAAGACCTACAGTAGTGGCGTGCAGTAATCCTGC
AAGCTGTGGTGTGCCCGAGGATGACTATGGTGAAACGATCCCGTTGTGTT
GGTTCCTCCGTCTGTGCCATGGTCGGGCGGTGGAGTGAAAGAGCGTGTTG
AATCGAGGTGAAACATTTC
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protein sequence of EsuBft960_2a-0001

>EsuBft960_2 ID=EsuBft960_2|Name=EsuBft960_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=385bp
MGLRERLLTAAVALPLALWAIFHDAWLCLSLVLVLQAVCVQEVGELLRRT
RAARAVAATGVGAGLLGSTFLFHIIAETISLITAFCGRDAAGIAMCVGMA
LIVARRLVLMRDHWAASNLSAEKPVWVGGRGGDGGEGDGAGVMEAGVFLL
ALEISAMLWLVCGCSSLVALRFRGSRGAADVLFLLAVVFNSDNGGLLAGS
MYKALRRKRQLHLPSSELLQRRKRSSASQTPPAATGAAEMTPGKKQPGLL
TVASPGKTWVGVTGSIALGTATALTLEQALLFLLHGTLLSKVGESLPGEE
ERGDVLSVGGMSSGGLGVVGAGLCVVGVVGDLWESLLKRTAMVKDSGTVF
PGHGGCLDRLDGVLAAAPLYLAVLAAFGLSPVDEP
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mRNA from alignment at Scaffold_242:1024249..1029366-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft960_2a-0001 ID=EsuBft960_2a-0001|Name=EsuBft960_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5118bp|location=Sequence derived from alignment at Scaffold_242:1024249..1029366- (Ectocarpus subulatus male Bft15b)
ATGGGCCTACGCGAGAGGCTTCTGACGGCTGCGGTGGCCCTACCGCTGGC
CCTGTGGGCCATTTTCCATGACGCCTGGCTGTGCCTTTCCCTGGTTCTAG
TGCTACAGGCGGTTTGCGTGCAGGAGGTGGGCGAGCTTCTCCGCAGAACA
AGGTGATGGTTGGCCCTTGTGCACGAGGTGGGCCTATCTCTAGCCTCTAA
TTGTGCCTGCTGTACCCTGGCGGTGTTGCCTGCTACACCCCACCACCTGT
ACCATGTGCAAGTGCTGCTGCTTGTACGGAGAAAGTACTGCTGTTGTTGT
TCTTTGGACAACCAAGGGTGGCAAAGAGACCGAGCAGCCTCAAACGAACA
ACTGCGTCCCACCGTTGAACACACGCAGGGCCGCTCGAGCAGTAGCTGCC
ACGGGCGTTGGGGCGGGTTTGCTGGGCAGCACGTTCCTCTTCCACATCAT
CGCCGAGACGATTTCTCTAATCACCGCGTTCTGTGGCCGCGACGCTGCAG
GTGGGCGACATCTGTGAGATGCACTATGTGCTGTAAACAATCCCCCCCAC
ACACGATCAGTAGATCTTCAGAGCAACGATGGTACATTACTAGCGAGGGC
TCAAAGGGGAGTTGCAGGGATGGCCGTCATGAACTAGTAGCGTAGTAGCA
ATGTCCCTCCCGCAAGGTACGGTCGGATAGAAAGCCAGCCTGTAGGGTAG
ACTACCGTACATACAGCAGCATGAAGTTTTCGTTGGTCAACCGGCTAGCC
CGGTCGATGCTGACTCAAACCTGCTCTCAACATTGCCCTGATTGCGCGTT
CGCGGTTAAATATGCACCTGTAGGGATCGCGATGTGCGTCGGTATGGCTT
TAATTGTGGCCCGCCGCCTGGTGCTCATGCGTGACCACTGGGCTGCTTCG
AACCTATCCGCGGAGAAACCGGTTTGGGTTGGCGGGAGGGGCGGTGATGG
TGGGGAAGGGGATGGCGCTGGGGTGATGGAGGCTGGAGTTTTCCTGCTGG
CCCTCGAAATTTCTGCGATGCTTTGGCTGGTCTGTGGCTGCTCCTCACTT
GTAGCGCTTCGATTCAGGTGCTGCCTGTGGTTGTGTTGCTATTTTTTTAC
TCATACTTACGGAAGATTAAGATTGGATTGATTCTCTACCCTTGCTGCGA
CAGACTTCACAGTTTTACACCACGTCTTCCCAGATCGCAGCAATTTTTTT
CCTCTCCCGGCGCACCACCGGCCAGCAATCGAAGGTCGCCGGTTGTTTTC
AATGCCGCGGTCCTTTCCACGCACCCCTAGGACAAATTACATGAATACAG
AGTACATTCGGCGGTCCTCTGTCGCTGTGATCTGTTCGACAGCATGCTGC
GTGTCTGCCTCTGCCAATAGTACAGTAGTGCTCCCGCTGGCGCTGCGATC
ACTTATTTTTGTTGCACCTCGTACACTGTCTTCGCATCACTCCAGCCACA
AAAGCTGTCATCCCCGCGCGCAAGCGACGTGCGTAGTCAATCGTTCGCTG
AGATTCATATTCGTCAACCATGTGTGTGCATGTGCAGTGATCAGCGCGCA
CGACCTTCATCCGTTTGACGCTTGGCTCCCCATAGTTATTTTCGGGGGTG
GAATGGTTGGCAAGGAGCAGAGATGCGGGCAACAACAACGATTTTTCGGG
GGGCCGAACAGTTGGCTAAATGGAAAGGTGGATGATTGATTCCACAACCA
GCGAGTAGGAAAACACCCATATCTTCGTGCGCCGGCGGCCTCGGCGTGCA
TTGCGTCGACCCACATGTTTATGTGTGATTGAGTGCGAAAGGCATACTAT
GTTATTGTTCATATAATAGCTGATGGCAGTCCTCGGTCATGGTGGGACAC
GGCATGTCGTCTTCTGCCATCTACGTTTGTATTGGTATTGGCGCATGGTG
CGTTTTCCGGCTCGTGCGTTTCTGCGACTTGGATTTCTCCACGCAGATAC
ACAGTACCATCTCGACTGGTGTCCGTAGCACAGTTTTCCGCGGTCTTGGC
AATCTATGTTGTCTTTTTGGCTTCTCCGTGTTCTTCGATAGGAACATGTC
CGGGCATCTGTGCTATTTTTCGTAGTGGTTCTGCACGCAAGAACTGCTGT
ATCTCACCTCCTGTTTATGTAAGCAAAGGGAATGAGCCTCAACATCTTTC
CGACTTCCTTTTTCTTGGACCAAGGGACACCGTCAATGTACATCGTCGAA
ATTCCCGCGTTGCACACCAACCTCTCGAGTGGCAAATACTTTTCTCGCGT
CACACGACACGTCGTCTCTTACGCCCCGCCTTGAACAATATCTCCTCCTA
AACCATCACTGAATCTCCTGGAATTTCACGCACCAGATTATTCATCCCTA
AAAAGCAAAATATGTTTTGGAATCGCTTCAGAAAGCGTGGCGGATAAAAC
CGCCGAAAACCTAATAATTTCGAATATATTCCCCCCTTCCGTATTTTTCA
TTTCCTGATTACGACTGCGACACCGCCTGTGCTTCTTGTCAACAATAACA
TCCGTCTGAAATGCAGGGGCTCAAGAGGCGCTGCAGATGTTCTTTTCCTC
CTGGCGGTTGTGTTTAACTCGGACAACGGAGGGTTGCTGGCGGGTGAGAA
GAACACTAAGATATACAGGATCGAGACCGCAATCAGTCTCTGTGTGCAGC
ACATGTCATCAAAGTCAGCTACACCAGCGATGGAAAGCTTTTGGTATCGT
CCGTCTATCGACGCCACCTTGACCCTCCGCCCGGGCGCAAGCGCCTACTA
CACGCAAGTCACAGCAGCCGTCGTCAGAAGGTAATCCCTTGTTTTTGTTC
CCTTTTTTCTGCTTGTCCGATCCGACTGGCCGTACCCTGTCTCGCAGGCT
CCATGTACAAGGCTCTTCGACGAAAGCGGCAGCTGCACCTTCCCAGCAGC
GAGCTTCTCCAACGACGCAAACGATCGTCTGCGAGTCAAACACCGCCGGC
CGCCACTGGTGCCGCCGAGATGACCCCCGGGAAAAAACAGCCAGGTCTCC
TCACCGTCGCGAGTCCCGGCAAAACCTGGGTAGGCGTCACTGGATCCATC
GCCCTGGGAACGGCCACTGCCCTGACTCTGGAACAGGCTCTTCTCTTTCT
GTTGCATGGAACGTTGCTGTCGAAAGTCGGGGAGAGTCTCCCGGGCGAGG
AGGAACGAGGGGATGTTTTGTCCGTCGGGGGCATGTCATCCGGGGGCCTC
GGCGTTGTAGGGGCTGGCCTTTGCGTCGTGGGCGTCGTGGGGGATTTATG
GGAGTCTCTGCTGAAGCGAACGGCGATGGTAAAGGTGAGCCCATGGACAC
CTGGTCAATCCTCCTTGTGCTTCGTTGCCGTGGGTTAGTGACAAACACAC
CGAACGGTATGATACGTAACTCGTGTGTGGCTTGACTCAAATGAAAAGGT
TCGGTCCACGGCCGCGCAGTTGAGCTGTCTACAGGTCCGGTTCAGTTCCG
TTTTTCAGCTCTTATCGGTGTGCATGCCGAAATATCGCCGGTGTGCCTCG
CCTAAGAGGGAAAAAGTACGTAGAGACCAGAAGAGAGACGAAGAGGCAGC
CAGCCCCAATGGCACGCATAATAGCAATGTGCAAAGGGTACACACAGTAC
TACTTACATGTCAAATCCCTCTGATATGGGGCACATGCGCTTTGCACATC
ACCTATGAACTGCCTACTGGTGTATGATCCGAAGGGGAAAAATAGTACCA
CGTCGGGTGCATCAACACCCTTCGACATGTGCTCAACCCGGCCGCGCGTG
CGCGCGAAAGAGCAACGACAGCGCATGCCGTAATCACCTATTGGCCCGGT
GCTTGCTGTTGTTGAGGTTGCGGTGTGCGTGGTTCCCAGTATTGGAAGTT
GAAGGAGGTGCGCCTGCTATGTGCAATGTTCCGCTCAAAAGGAAACTGTG
TTCGTGACTACAGCTCCGATCTTTCCTGTCTATTTCTTGGTACAGAATCA
AACTAGACAAAGTTTTCCATTTTTTTTTTTTAAGTCATATATTGATGACG
GTCTCGATGAGCCGTTATGGTTTGCATCGATCTGGCGCGTGTAGTGGGTG
CCGCATTTTCCCTTCAACGTTTTTGCATCTGACGCTGATAGTATATGCGC
TTGGCGATTCCTTTAGCCAGGGATTTGCAGAAAAAATCATTGTGCCAGAT
TCCACACGTGCATCCTCGTTGCGGATGGTTGTTGTCGGACAGAGGCCTGC
ACTTGCTCACCACATCGACGCTGCTATACATTGTTTCTCTCTCCTACTGC
TGTATCATCCTTGCTGCCGTGATTTATATGTGTACATGCGCGGAAGGTCT
TGGAACACAGAGAACAGTTGTGGGAAGTTAAATACAAAGGAGTCAAATGA
ACCCAGCCATGGAAGGGTTACTTCGTAAAATGCTTCCGTGTTGTGTATTG
TAGCGCAACCAGTCGCCCGGATTAAATTGTTGTTTCCCTGTCAACTCGAT
TCACATGCCGGCCATGGTGTTACCCATCCAGGATTCCGGCACGGTCTTTC
CTGGCCACGGGGGCTGCCTGGACCGTCTGGACGGTGTCTTGGCAGCAGCA
CCGCTATACTTGGCTGTGCTCGCGGCGTTTGGGTTGTCACCAGTAGATGA
GCCATAGATGTGGCAGCTGATGTTCGCACACGGTAGCAGTGTTTAACTGG
TTTTAACATTACGTGCGACGCAGAATGTCCCTCGCCGCTTACCCACACGT
GCATGACCTCCACTCCCGTAGTACCCGGTGTTTTGTTTCGGCGTCATGAT
GCGGAGGCCACGACTGACAGCTTTCATCGCACAGGTGATGATTCTGAAAA
GTTTCCTATTGTCATTTGGTAGCTTGCGCCACGTGATTTCCTGGTCGCCC
TCAAGCGGCAAGTGCTCACCGGGAGAAGAACGGTGAATGGCCAAGCGACG
TTTTTTTGGAACCACGTACCCAAACGCAACGGCAAACCAACGTCATGTCG
AGGAAGAATACGATCAAAGACCTACAGTAGTGGCGTGCAGTAATCCTGCA
AGCTGTGGTGTGCCCGAGGATGACTATGGTGAAACGATCCCGTTGTGTTG
GTTCCTCCGTCTGTGCCATGGTCGGGCGGTGGAGTGAAAGAGCGTGTTGA
ATCGAGGTGAAACATTTC
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Coding sequence (CDS) from alignment at Scaffold_242:1024249..1029366-

>EsuBft960_2a-0001 ID=EsuBft960_2a-0001|Name=EsuBft960_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1158bp|location=Sequence derived from alignment at Scaffold_242:1024249..1029366- (Ectocarpus subulatus male Bft15b)
ATGGGCCTACGCGAGAGGCTTCTGACGGCTGCGGTGGCCCTACCGCTGGC
CCTGTGGGCCATTTTCCATGACGCCTGGCTGTGCCTTTCCCTGGTTCTAG
TGCTACAGGCGGTTTGCGTGCAGGAGGTGGGCGAGCTTCTCCGCAGAACA
AGGGCCGCTCGAGCAGTAGCTGCCACGGGCGTTGGGGCGGGTTTGCTGGG
CAGCACGTTCCTCTTCCACATCATCGCCGAGACGATTTCTCTAATCACCG
CGTTCTGTGGCCGCGACGCTGCAGGGATCGCGATGTGCGTCGGTATGGCT
TTAATTGTGGCCCGCCGCCTGGTGCTCATGCGTGACCACTGGGCTGCTTC
GAACCTATCCGCGGAGAAACCGGTTTGGGTTGGCGGGAGGGGCGGTGATG
GTGGGGAAGGGGATGGCGCTGGGGTGATGGAGGCTGGAGTTTTCCTGCTG
GCCCTCGAAATTTCTGCGATGCTTTGGCTGGTCTGTGGCTGCTCCTCACT
TGTAGCGCTTCGATTCAGGGGCTCAAGAGGCGCTGCAGATGTTCTTTTCC
TCCTGGCGGTTGTGTTTAACTCGGACAACGGAGGGTTGCTGGCGGGCTCC
ATGTACAAGGCTCTTCGACGAAAGCGGCAGCTGCACCTTCCCAGCAGCGA
GCTTCTCCAACGACGCAAACGATCGTCTGCGAGTCAAACACCGCCGGCCG
CCACTGGTGCCGCCGAGATGACCCCCGGGAAAAAACAGCCAGGTCTCCTC
ACCGTCGCGAGTCCCGGCAAAACCTGGGTAGGCGTCACTGGATCCATCGC
CCTGGGAACGGCCACTGCCCTGACTCTGGAACAGGCTCTTCTCTTTCTGT
TGCATGGAACGTTGCTGTCGAAAGTCGGGGAGAGTCTCCCGGGCGAGGAG
GAACGAGGGGATGTTTTGTCCGTCGGGGGCATGTCATCCGGGGGCCTCGG
CGTTGTAGGGGCTGGCCTTTGCGTCGTGGGCGTCGTGGGGGATTTATGGG
AGTCTCTGCTGAAGCGAACGGCGATGGTAAAGGATTCCGGCACGGTCTTT
CCTGGCCACGGGGGCTGCCTGGACCGTCTGGACGGTGTCTTGGCAGCAGC
ACCGCTATACTTGGCTGTGCTCGCGGCGTTTGGGTTGTCACCAGTAGATG
AGCCATAG
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