EsuBft95_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft95_9a-0001
Unique Name	EsuBft95_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:235046..238780 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	4530.OS08T0125300-01
ProteomeId	EsuBft95_9
Protein domains	IPR001584
Protein domains	PTHR11439
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon	4
Max annot lvl	35493\|Streptophyta
Length	1728
Hectar predicted targeting category	other localisation
Evalue	4.8e-20
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,37THH@33090\|Viridiplantae,3GG2K@35493\|Streptophyta,3M5VU@4447\|Liliopsida,3IIIB@38820\|Poales
Date last modified	2016-06-14
Date creation	2016-06-14
Description	gag-polypeptide of LTR copia-type
COG category	L

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0003824
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft95_9a	EsuBft95_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 235046..238780 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_9a-0001-exon	agat-exon-30694	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 235046..236100 +
EsuBft95_9a-0001-exon	EsuBft95_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 237588..237829 +
EsuBft95_9a-0001-exon	agat-exon-30695	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 238050..238108 +
EsuBft95_9a-0001-exon	agat-exon-30696	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 238409..238780 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_9a-0001-cds	EsuBft95_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 235046..236100 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_9a-0001	EsuBft95_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 235046..238780 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:235046..238780+
coding sequence from alignment at Scaffold_129:235046..238780+

spliced messenger RNA

>EsuBft95_9a-0001 ID=EsuBft95_9a-0001|Name=EsuBft95_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1728bp|location=Sequence derived from alignment at Scaffold_129:235046..238780+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAACTGCA
GCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGACCCCGGTGCCGC
GGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACATCGAC
ATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTGATCAT
GTTCGTAGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCGGGCCA
AGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGAACGGC
AACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTCACGAG
TGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGAGTACA
CCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCATCTGG
CGAGCCATGAAGGGGGGCCACGCCGCCCGCCGCCACGTCCTCTCCATGGG
CCACTTCGACCTCGCCTCCATCCCCGGTATGGACGCCAACGGACACCGGC
TGTGGCTTGCATCGGCGATCTGGGCCTCCGGCTGCTTCAACCGTTCCGCG
ACGTCGGCCAACCCGGCCTGGATGTCGCCGTTCGAGGCCTTCTTCGGACG
CAAACCGCCGCTCAAGGTCGTCCCCTTTTTCCAGGAGGGGATGATGCGCG
TGAAGCGCGCCAGCAAGGCGGACGTCCAATCCGTTCGTTGCTTCTACCTG
CACGGAGCGCGCAGTCACTCCGACGCCACTGCCGTCGTACTCCGCGCCGA
CATCGGAAGGATCTGCCTGTCCAACAACGTCGTGTGGATCAGCCGCCGCA
CCGCCGTGCCGGCGCCGGTACCGGCCAGCGGGGGGGGTTCTTCGGTCACC
GCGGCGCCCTCGCCGGCCGCCGCCGCTCCTACAGCCGCTGCCGCACCGCC
ACCGCCATGGACATCGCGGACGTACACCCACACCCCGCCCACAGCGACTA
CCGCTACGCAGCCGCCCGCTTCACCGCCGCCAGCTTCTCCGTCGATCTTC
ACAGGTGACACGGAAATCATGGAGCAGCAGCTGGATGAGCTCCAGCTCTC
GGACGAGCAGCGAAATGTAATCGACGCTCTTATCAAGGAGCAGGTCAAGA
TCAAAGTAGAAGAAGCAGCAGCAGCAGCAGAGCGCCCCGCAACACAGAGC
GAGGGCATGCCTTCCGAAGGAGGCGACCCGGCTGGAGAGGCCGGCTGGCT
CGGAGTCAAGCCCGCGACCCGAAGACCAGCCCCGATCGCCGGTGGACGTA
TCACAATCCCTGCATTCACCGGGAAGTTCAGCCCCGAGGACGATGTACAG
ACGGCGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGGAGCCCCG
GCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCGTATG
GTTGGGTGCAATCCGATCGTGATGGTAACGTCCACTATGTCCGCAACCTT
CTGCCCGATGTTAATGTGCAGAGGAGCGTGTTGTTGGCGCATTCGGAGGT
CAAGACGGAATTGGTAGAGAAGGTGATTCTGACTGCCTGGGCGGAGACGG
AGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGCCCTCGTC
ACTGGCGGTGATAACCGTGGTGGCGGGGGCGGGAACATGGGGGATAGGGG
GAAGACGAGAGGACAACGGAGGANNNNN

protein sequence of EsuBft95_9a-0001

>EsuBft95_9 ID=EsuBft95_9|Name=EsuBft95_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=576bp
MRETAKQQGVQLVGELQPCVGCIEAKGRRTPVPRRGVTRAAVPFGKVHID
ITGPYSEAFDGSRYLIMFVDSASRWQRAYGMRAKSDTLTYTRRFLADLNG
NGPLGCFRMDNAGEFTSAAFVAFCDAAGIRREYTAPDTPKQNAVVESAIW
RAMKGGHAARRHVLSMGHFDLASIPGMDANGHRLWLASAIWASGCFNRSA
TSANPAWMSPFEAFFGRKPPLKVVPFFQEGMMRVKRASKADVQSVRCFYL
HGARSHSDATAVVLRADIGRICLSNNVVWISRRTAVPAPVPASGGGSSVT
AAPSPAAAAPTAAAAPPPPWTSRTYTHTPPTATTATQPPASPPPASPSIF
TGDTEIMEQQLDELQLSDEQRNVIDALIKEQVKIKVEEAAAAAERPATQS
EGMPSEGGDPAGEAGWLGVKPATRRPAPIAGGRITIPAFTGKFSPEDDVQ
TAGQWYSLKQQVGEEPRRYLTRASVLRQKLEAYGWVQSDRDGNVHYVRNL
LPDVNVQRSVLLAHSEVKTELVEKVILTAWAETEAARKRASESVGAYALV
TGGDNRGGGGGNMGDRGKTRGQRRXX

mRNA from alignment at Scaffold_129:235046..238780+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft95_9a-0001 ID=EsuBft95_9a-0001|Name=EsuBft95_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3735bp|location=Sequence derived from alignment at Scaffold_129:235046..238780+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAACTGCA
GCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGACCCCGGTGCCGC
GGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACATCGAC
ATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTGATCAT
GTTCGTAGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCGGGCCA
AGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGAACGGC
AACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTCACGAG
TGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGAGTACA
CCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCATCTGG
CGAGCCATGAAGGGGGGCCACGCCGCCCGCCGCCACGTCCTCTCCATGGG
CCACTTCGACCTCGCCTCCATCCCCGGTATGGACGCCAACGGACACCGGC
TGTGGCTTGCATCGGCGATCTGGGCCTCCGGCTGCTTCAACCGTTCCGCG
ACGTCGGCCAACCCGGCCTGGATGTCGCCGTTCGAGGCCTTCTTCGGACG
CAAACCGCCGCTCAAGGTCGTCCCCTTTTTCCAGGAGGGGATGATGCGCG
TGAAGCGCGCCAGCAAGGCGGACGTCCAATCCGTTCGTTGCTTCTACCTG
CACGGAGCGCGCAGTCACTCCGACGCCACTGCCGTCGTACTCCGCGCCGA
CATCGGAAGGATCTGCCTGTCCAACAACGTCGTGTGGATCAGCCGCCGCA
CCGCCGTGCCGGCGCCGGTACCGGCCAGCGGGGGGGGTTCTTCGGTCACC
GCGGCGCCCTCGCCGGCCGCCGCCGCTCCTACAGCCGCTGCCGCACCGCC
ACCGCCATGGACATCGCGGACGTACACCCACACCCCGCCCACAGCGACTA
CCGCTACGCAGCCGCCCGCTTCACCGCCGCCAGCTTCTCCGTCGATCTTC
ACAGGGTCCGGAGCTCCGTCGCCGATATCCACGGCGTCGTCGAGTGCACC
GCCGTCCACCGCAGCCANCTTCGTGATTGATTATTTTCGGACGTATTGTT
TTGGTGTTGGGATCTTGAATTTTGGCTTGGGGTTGACTGTGTTTTGGGAT
GAATTGGTATGAGAAGGATGACTTTGATATTTTGCCGGAGCATAACGATG
CATACGAGCAGGGGGACTATTCGATATACTCGTAGCGTATCATGCGGGTG
GTATATTGCGTATACACATGCGGGTATTGCAGTGACGAACTACGGAGGAA
CAAGAAGTTTCTTTATGTTTTCCTTGGGAGTGTGATAGATTGGTGGAGAT
TCATGAAGATTCGTTTTGGGTGTTTGAGCGTTGTGCGTGACTTGATGCCG
TGATGGAATGACGAGCTCAAGCACGCCCCCGATGAATACTACACGTATAC
AACACGTATACAATACGCATACAACACGTTTACAACACGTTTTTCCACAC
GTCTGTACGACTTTACCTACCCCTACGGCCCGTCATGGCCGAGCTGCTCT
ACACTCCCATCACACACAACTGAGCCACCCGAATTATCGATCACGGCAGA
CCGACTCCCAGAGATGATGCAGCTGAATCATCGCCGCCTGCAGCTGCAGC
AGGAACATCAGCCACCGCAGCACGGTGGTGAACATTTTCTAGATCTCTTT
CCTGAGCAGCTGCGGCCGCAGCAGTAATTGCAAACGCATGAAGGCGAAGT
CTTCTCGCCTCCGCAACCAGCAGTCGCCACCACAGTTCAACTTGTCGAAC
GACGGCGAATCGTTTCCCCAGACTGCGAAAATGAATTCGAACTGTGGGAA
TGCGGTTGGTTGGGGTTAGCTACGTGTGAGACAAGGTGCAGGGCAGCGGT
GTGTGTCATAGCAATCAATGCTTGACGTACTCCACAATTCGCTTCAAACA
TCTTTACTCCACACATCCTACCTGTACCTGCCTGGATTCATTTCGCTATG
TTTCTAGATTCTGGTACGCAAATACTGGTGCGTCCCCCCAGCACGGCGGG
CGCTGACTGATCGCGTCGAGATATCCATAAGAACTCACAACAACCTCAGC
AACGACATCAAAATGACGTGTTCGACCGTGAGGACTGATAGATATACTTG
TAGCAATGCCAAGTGGTTGGTGCTGGATGTTCCCATGGAATGAGGTAGAG
CGGAATACCGGGTGGTACGTAGAATGGATTCCAGGGATGTACCAGGTACC
CCTGTTGCCCCTGTTGAATACGGCGTCGCCCCCTCTACGGGGCTTGTGTG
TGTGTATGTGGATGCAACTAATCACGACAAGTTTTTCTCCTCGGCGCAAG
CTCGCCGAGTTGCCGATACCCTATTCAACACACGTCTTGCGACAAGCTAC
CCCCAGTTCGAGTTATCCAAACACGCTAGCGTGGTGATATCAACGGGATC
CCGAGGTGGGGCTAGTTACAAAAGGGTTCGGCCAGAGAACAGTGACACGG
AAATCATGGAGCAGCAGCTGGATGAGCTCCAGCTCTCGGACGAGCAGCGA
AATGTAATCGACGCTCTTATCAAGGAGCAGGTCAAGATCAAAGTAGAAGA
AGCAGCAGCAGCAGCAGAGCGCCCCGCAACACAGAGCGAGGGCATGCCTT
CCGAAGGAGGCGACCCGGCTGGAGAGGCCGGCTGGCTCGGAGTCAAGCCC
GCGACCCGAAGACCAGCCCCGATCGCCGGTGGACGTCAGCCTCATCNAAA
GGCATGCCTTCCGAAGGAGGCGACACCCGGCTGGAGAGACCGGCTGGCTC
GGAGTCAAGCACGCAACACGAAGACCAGCCCCGATCGCCGGCGGACGTCA
GCCTCATCGACACCCTCGCGCGGGCCTTGCAGAAGGTCAAGATAAACCGG
AGGATGAATACAGGGAAGTCCCAACCTCTAAAGAAACAATACTTATTAGC
GCAGGTATCACAATCCCTGCATTCACCGGGAAGTTCAGCCCCGAGGACGA
TGTACAGACGGCGGTAATGGATTTCGCCAGTCAATTTCGATCTTTGTTGG
AGCAGGAGCGTTGCCTTTGGGCAATAGAATCGAAGAACACGATTCGTGTA
GGGAAGACGGATGCGAATATCTAGGCATTGAAGGTGGAGCATGGGACGGA
AGCTGTAGATCGGGCGGTTAAGGCTTGGCAGCTAATTATATCCAAGATAC
AAGTCCCGACAATAGTCCCTGCAATCCTAGCTGGTGGTTGTCCCCCTGAA
TCGTGGGATCAACTTCTCAACTTTTACCGAGCGCACGCAGAAACGGACAA
GTTGGAGTTGCAGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGG
AGCCCCGGCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAA
GCGTATGGTTGGGTGCAATCCGATCGTGATGGTAACGTCCACTATGTCCG
CAACCTTCTGCCCGATGTTAATGTGCAGAGGAGCGTGTTGTTGGCGCATT
CGGAGGTCAAGACGGAATTGGTAGAGAAGGTGATTCTGACTGCCTGGGCG
GAGACGGAGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGC
CCTCGTCACTGGCGGTGATAACCGTGGTGGCGGGGGCGGGAACATGGGGG
ATAGGGGGAAGACGAGAGGACAACGGAGGANNNNN

Coding sequence (CDS) from alignment at Scaffold_129:235046..238780+

>EsuBft95_9a-0001 ID=EsuBft95_9a-0001|Name=EsuBft95_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1728bp|location=Sequence derived from alignment at Scaffold_129:235046..238780+ (Ectocarpus subulatus male Bft15b)
ATGCGGGAAACCGCCAAGCAGCAGGGTGTTCAATTGGTGGGGGAACTGCA
GCCATGCGTCGGCTGCATCGAGGCGAAGGGCAGGAGGACCCCGGTGCCGC
GGCGTGGAGTCACCCGCGCGGCGGTACCGTTCGGCAAGGTGCACATCGAC
ATCACCGGCCCGTACTCTGAGGCGTTCGATGGTTCCCGTTACCTGATCAT
GTTCGTAGACAGTGCGTCGCGGTGGCAACGGGCGTACGGCATGCGGGCCA
AGAGCGACACCCTGACGTACACGCGGCGTTTCCTCGCCGACCTGAACGGC
AACGGCCCTCTGGGGTGTTTCCGCATGGACAACGCGGGGGAGTTCACGAG
TGCTGCCTTCGTCGCGTTCTGCGACGCCGCTGGCATCCGGCGCGAGTACA
CCGCGCCCGACACCCCGAAGCAGAATGCGGTCGTGGAAAGCGCCATCTGG
CGAGCCATGAAGGGGGGCCACGCCGCCCGCCGCCACGTCCTCTCCATGGG
CCACTTCGACCTCGCCTCCATCCCCGGTATGGACGCCAACGGACACCGGC
TGTGGCTTGCATCGGCGATCTGGGCCTCCGGCTGCTTCAACCGTTCCGCG
ACGTCGGCCAACCCGGCCTGGATGTCGCCGTTCGAGGCCTTCTTCGGACG
CAAACCGCCGCTCAAGGTCGTCCCCTTTTTCCAGGAGGGGATGATGCGCG
TGAAGCGCGCCAGCAAGGCGGACGTCCAATCCGTTCGTTGCTTCTACCTG
CACGGAGCGCGCAGTCACTCCGACGCCACTGCCGTCGTACTCCGCGCCGA
CATCGGAAGGATCTGCCTGTCCAACAACGTCGTGTGGATCAGCCGCCGCA
CCGCCGTGCCGGCGCCGGTACCGGCCAGCGGGGGGGGTTCTTCGGTCACC
GCGGCGCCCTCGCCGGCCGCCGCCGCTCCTACAGCCGCTGCCGCACCGCC
ACCGCCATGGACATCGCGGACGTACACCCACACCCCGCCCACAGCGACTA
CCGCTACGCAGCCGCCCGCTTCACCGCCGCCAGCTTCTCCGTCGATCTTC
ACAGGTGACACGGAAATCATGGAGCAGCAGCTGGATGAGCTCCAGCTCTC
GGACGAGCAGCGAAATGTAATCGACGCTCTTATCAAGGAGCAGGTCAAGA
TCAAAGTAGAAGAAGCAGCAGCAGCAGCAGAGCGCCCCGCAACACAGAGC
GAGGGCATGCCTTCCGAAGGAGGCGACCCGGCTGGAGAGGCCGGCTGGCT
CGGAGTCAAGCCCGCGACCCGAAGACCAGCCCCGATCGCCGGTGGACGTA
TCACAATCCCTGCATTCACCGGGAAGTTCAGCCCCGAGGACGATGTACAG
ACGGCGGGGCAGTGGTACTCGTTGAAGCAGCAAGTAGGGGAGGAGCCCCG
GCGCTATCTCACAAGAGCATCAGTACTTCGCCAGAAACTAGAAGCGTATG
GTTGGGTGCAATCCGATCGTGATGGTAACGTCCACTATGTCCGCAACCTT
CTGCCCGATGTTAATGTGCAGAGGAGCGTGTTGTTGGCGCATTCGGAGGT
CAAGACGGAATTGGTAGAGAAGGTGATTCTGACTGCCTGGGCGGAGACGG
AGGCCGCTAGGAAGAGGGCGTCGGAGAGCGTGGGGGCGTATGCCCTCGTC
ACTGGCGGTGATAACCGTGGTGGCGGGGGCGGGAACATGGGGGATAGGGG
GAAGACGAGAGGACAACGGAGGANNNNN