EsuBft95_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft95_7a-0001
Unique NameEsuBft95_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:204648..209107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8B6
ProteomeIdEsuBft95_7
Protein domainsSSF159501
Protein domainsIPR007314
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Max annot lvl2759|Eukaryota
Length80
Hectar predicted targeting categoryother localisation
Evalue2.92e-173
EggNOG OGs2C7ZX@1|root,2S33F@2759|Eukaryota
Ec32 ortholog descriptionDomain of unknown function DUF399
Ec32 orthologEc-19_003860.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionHaem-binding uptake, Tiki superfamily, ChaN
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7aEsuBft95_7aEctocarpus subulatus male Bft15bgeneScaffold_129 204648..209107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7a-0001EsuBft95_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 204654..209086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7a-0001-exonagat-exon-30690Ectocarpus subulatus male Bft15bexonScaffold_129 204648..204862 +
EsuBft95_7a-0001-exonagat-exon-30692Ectocarpus subulatus male Bft15bexonScaffold_129 206187..206319 +
EsuBft95_7a-0001-exonagat-exon-30691Ectocarpus subulatus male Bft15bexonScaffold_129 207599..207715 +
EsuBft95_7a-0001-exonEsuBft95_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 208489..208538 +
EsuBft95_7a-0001-exonagat-exon-30693Ectocarpus subulatus male Bft15bexonScaffold_129 208822..209107 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7a-0001-exonagat-five_prime_utr-15310Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 204648..204653 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7a-0001-cdsEsuBft95_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 204654..204862 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_7a-0001-exonagat-three_prime_utr-23528Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 209087..209107 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft95_7a-0001 ID=EsuBft95_7a-0001|Name=EsuBft95_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=801bp|location=Sequence derived from alignment at Scaffold_129:204648..209107+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGGAAATGCAGTTCCAGCCGGCCCTTGATTCATACGTTGCCGGAGGAGG
CCAGGGGGGTGATGGGAAGGACGGGGACCTAGACAGCGCGGACGCCGAGC
TGGCGCGGGCCACGCAGTGGGCGGAGCGCTGCGCCTTTCCCTTCGAGAAC
TTCCTACCGTTGTTGCACCTCGCGAGAAGGCGAGGCCTGCCGATGGTCGC
CTTGGGAGTCGACAGCGAGAAGGTGTTCGACGTGATGCAGAACGGCATGG
ACTCGCTCGGGGAGGACGACAGGAACGCGTACGTGTCCGACTTCAAGGGC
TTCGTGACGTACGTGAGGGACAAGGGCTTCCAGGTCTACGCGGACAAACT
GATCTTCCCCTCGTACGACAGGCTCAAGGAGGCGGGGTTGTTGGGCAGCA
AACCGCCGACCAAGCCCAACTTCTTCGCCGCGAGAATCCTGGCTGACGAG
GCTCTCGCTTCTAAGAGGGAAGACCACGTTAAGTTCGGCTTCGGCGCTTC
GGGGAGAGCGGCAAGGATCGCCAAGAGCCTTGGGACCGAGATGCCGACCA
AGTCCGTCCTGATAAACCCCACCGCCGAGGGATCGCTGTCGCAGAGCCGG
TCCTTGAGGCTGGCGCTGGAGTACGCCGACGACCTCCAGAATGGGAAGCC
GCTGGCCAACTACCTTTGGTTTAGCAAGTCCCCGAAGGTCAACCAGATCC
CGCGCATGGTCAACCCGGAGGATAAGGGATGGCTCGAGAGGATCAACCTG
TACGACCTGAAGGGGGCGGCACCCTCGTAGTGTTGGAGGGAGAAGCGTCT
G
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protein sequence of EsuBft95_7a-0001

>EsuBft95_7 ID=EsuBft95_7|Name=EsuBft95_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=257bp
MQFQPALDSYVAGGGQGGDGKDGDLDSADAELARATQWAERCAFPFENFL
PLLHLARRRGLPMVALGVDSEKVFDVMQNGMDSLGEDDRNAYVSDFKGFV
TYVRDKGFQVYADKLIFPSYDRLKEAGLLGSKPPTKPNFFAARILADEAL
ASKREDHVKFGFGASGRAARIAKSLGTEMPTKSVLINPTAEGSLSQSRSL
RLALEYADDLQNGKPLANYLWFSKSPKVNQIPRMVNPEDKGWLERINLYD
LKGAAPS
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mRNA from alignment at Scaffold_129:204648..209107+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft95_7a-0001 ID=EsuBft95_7a-0001|Name=EsuBft95_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4460bp|location=Sequence derived from alignment at Scaffold_129:204648..209107+ (Ectocarpus subulatus male Bft15b)
GTGGAAATGCAGTTCCAGCCGGCCCTTGATTCATACGTTGCCGGAGGAGG
CCAGGGGGGTGATGGGAAGGACGGGGACCTAGACAGCGCGGACGCCGAGC
TGGCGCGGGCCACGCAGTGGGCGGAGCGCTGCGCCTTTCCCTTCGAGAAC
TTCCTACCGTTGTTGCACCTCGCGAGAAGGCGAGGCCTGCCGATGGTCGC
CTTGGGAGTCGACAGGTGCGTGCGGGTGTACAGCAGGGGTTGCGACGGCG
GTGTGTGTGTGTGGTGGTGGTAGGGGATGATGCATGCAGTTTCCTGCTGC
GTTTGGGCCAGGAGGGGCTTGATCTGCTATCGTTTGGGGTTTTCGGGGCG
GCGAGAGAAAACAGGAGCGCCGCTTTGATGTTTTGTTGGCGCGGAGGGGA
TTAAGGAGAAGATCGTAACGAGGGCCACTCGGCGATCATCGTGTGTGATT
GTTTTCTCTTTTGATAGGGACGCGCTACATGCTGTCATGTTTCGAATTCG
GTTTGGGCCTTCGTTAAGTTTGTCAGGCGCGCCATCTTGCATGATTGTTT
TTTTTTTTTATCGGGGACGCTACGATTTATTTTTCGAACCAGGTTTTGGC
CTTTGAAAAGTTTGTCAGGCGCCATTCTGTTTGTCAAGCGCCATCACGCA
TGATCATTTCGCTTTGTTCGGAGACGCTGGACAATGTATGATATTCGAAC
TCACGTTTGGTCTTGGTTAATTTGGTCCCCGTCCAGCCATTGTGCGGGTG
GTGTTCGTTCTGTTCAAGAACGCTGTACGATTTTCGAAGTCAGCTTGATC
TTCGTTAAGTTCATCTGATGCCATCGTGCGGGGTGTGCTTTTCTTGGGGC
TGGTCTCTCGGTAGCCGGGCTGTTGCACGTTGCGAAGAACGGCCTTCTGA
ATTCTTTTTGTAGGGCAAGGTGCTTCATTATTTATTCCCATCGTGTGCGC
GGTGAGGAGTTTTAGACGAACGGGTCGATCGTTTGGGTGTTCTCACGTTC
AGCTTTTGGCCCCGTTGGGCATGAAGACCTACAAGCACAGCACCGGACGT
CCGTACACCGTGTGGGGTTGCTATTTGATACCAGTATCACCTTTTGTGTG
GAGTCTTTTTGGTTATCCTTTCTGTCATTATTGACGTAATATATTATTAT
TATTTTTTTTGGGGCCCGACTTCGACGCTGGGACCTCGGCAATCCGCACC
CCTCGCCTCGCCTTTGATGCACGGCAGCGATGTTTTTCCGTGGCACAGTC
AAGCATGCGTGGGGCTCCGAAATACCCGACGATTTAATGAATATGCCTCC
CCACCCTTCAGAAAATGCGCGCTGTCAAGCAGTATATCCTTGCTGCGCGG
AAACATATTGTTGCGACCGTGTGCGGCATACTGGCAGTTTGCTGGTCCCG
AGCTTGTTTGTGCCTTTGCCGTGTGCTGTCTGTCCTTCAGGGTAGATATT
TTTTTTCGATATCGAGAAACGATACTTGATACCAAACACCGCATGTATGT
CGTGGATATTTTTTGGCGTGTTATTGTGTTTCCTGGCAGCGAGAAGGTGT
TCGACGTGATGCAGAACGGCATGGACTCGCTCGGGGAGGACGACAGGAAC
GCGTACGTGTCCGACTTCAAGGGCTTCGTGACGTACGTGAGGGACAAGGG
CTTCCAGGTCTACGCGGACAAAGTACGTTGTGTGTGAGTTTCGCTTTGTT
CTCCGACACTTCCTATTGTGGCTCATGATGGAAGTCCGTCCCTTACTGCT
GTATCGCCTTTCGCGACCTGGTGCTGTTCTGGGGCACCCGCAGATTGTAT
TGCTTCCCTTCTGGAGCAAGGAGCAACGCCGCTTTGTCCCAAACTTGGCC
TCTACAAACCCAAAATGTATTGAATTTTGTCGAAAGCACTGTTGAATTAT
ACCCAATTAGTTGTTCAGCGCTCGCGTCGGATTGGGTGGGCGGTGTTACT
ACCGCTCTGATTGACAACGTACCAACGGTAATCCATACCCCAAGTGACCC
GCCCTTGTGCTTGCAAACAGCGTGGTTCCTCGCCAACAGCTTTTTGCTTG
TTGTATGTTTCTGTGTGCCTGGTCTCACCCTCACCCTGAGGGAAGACGAG
AAGCCCGGGAAGTCCTGCCGCGAACCCCCTCTTTGCAGATCGCAATGTGT
TCCGAGTTCTCTTGCTTGTTGTCGACTCGAATCCAACATCTTGTACTGGT
GTTTCGTTCTCCGGCGGCATGACTTTGTCTTAGAATGGCTTCTGTAGGGT
TGCACTCGTTATTTCATTTCGTGGTTATCGGTGGCTGTAGGGAGCTTAGT
ATGATCCCGTATTTGTAGCGTCGAGGTGCTTCGTATGATGCCACACAGAA
AAGGTCACCCTGTTCGCCCTTCGATGTAGCTGACAAGCCGCCCGCCCTTT
CCTCCTTTCAGTCTGGGACTCGGGACGCGCACTAGACCAACAATCCCACA
CGTAGTATGCCGTCCCCCCCCGTTGTTTTTGAACATACGCATACAGTACA
CGTTTTTTTTTTTGCCGTCTCTGCCTCTTGTGTCGCGATGGTCGATGGTC
GGCACCCTACCCTATTTTGCTCCTGGCCTTGGGCGTTCGCTGGAAAGCCC
CTCGCTACCACCGGTACGGCCTCCGCTACACTCCACAGTCTCCTTTTTGT
ATCTAGAGCGCCGGCCAACAACCCACAAGCAGCGTGGAGGACCTGTCTCT
ACCTCCTTTGTAGCGATGGTCGGCACCCTGCCCCGCTTGCTTTGGGCCGT
GGGTGTTTCCTGTAACGCGCCCCGCCGCCATATTCCACCGCCTCCTTTTC
CGCCGCCTCATTTTTTGTTTCGGGAGTGGTGCTTGCGAGGAGGTGGCTTT
CGGCACGCCGCCGCCGGTTCCCTTAACCTCGCCGGGTTCGTTCATTTATT
CGCCCGTTCCGTGCCGTCCTGTCCTACCGCCGTCGTCGTCTCTCTCGACA
GCTGATCTTCCCCTCGTACGACAGGCTCAAGGAGGCGGGGTTGTTGGGCA
GCAAACCGCCGACCAAGCCCAACTTCTTCGCCGCGAGAATCCTGGCTGAC
GAGGCTCTCGCTTCTAAGGTACGGCAAAGCCGGGCCGGGGAGGGGCAATG
CCGGTAGCGTCCCGGCGCTCACGCTGCTTGTGCAAGTTCTGCGGGGGAGT
ACACTCGCAAGGTTGGGCCGTTGACTCGCACCCCTTCAAGGCCAGGACGG
AGCGAAATGTCGGGTTTTCATAGCGAGATGGATTGTTGTTCGAGGAGCGG
GGGTTGCGAGGCGCGCGGGGTTGGGGGGGAGGTATGCTGTCTAGGGGAAG
GGTAGCGGGGGTCGGAGAGAGGGTCGTTTCAAGAAGCAGCGTGTGATTGT
AGCCTTGGTCTCGCGGCGAGATTCTTTTTTGACGCCTTTTCCACACTGTG
CAGTGCAGATCGGCTCGCCGAATCTGTATGCAGAAGAGGCATTGTTCACA
GTCGCCTGCGAGCTTCACCGTCGCGTGTTGTGCCATGCTAATTCCGACAC
GGTCCCGAGCGTTGTTCCCTATTTAATACTTCAGTATGAGACGGGCTTGA
CAAGTTGGGTTCGGGAGCTGGGTGTGGGGTCGAAGCTGCTAGAGGCTGCC
TTCTCCCGACCCAGCCATCTGGCAAGCTCGATGTTCGGCGGAGTGGACAC
CTCATGCCTGCTTTTTTGTAGGCATGCAAGAATCTAGTAGGGAGTGAACG
ACGGCCATGCATGGTGCTTCATTGAAAAACCTCCCTTTTTGCCCCCCGTC
CCCCCCCTACCCGGGCGTTGCTGTGGAAAACCCTAACAAGGCGGTGGATT
GGGCGACCGATAACCAGGGGCTGAAATTGTTTGTGGTGCAGAGGGAAGAC
CACGTTAAGTTCGGCTTCGGCGCTTCGGGGAGAGCGGCAAGGTGAGTGAA
TGACGCCCCGGAGCTTCATGCCGTTCGAGCGTGTAGAACGGTACGCGTTT
GAACCGTGCGCTATATTTATTGGTTCGGAGTCGGGCTCGGCAACGCCGTT
TCTTGAAGCCTCACGACCGTGATGTTGTCGGCTCAGAAGATGGGGTGGCT
AGGATATTTGACTACTGCTGCTGCTTTTGATTGCCAACCAGTCGCGACTC
TTGGCCAAGGCAGCTGGCCCTCGCCGAAATCTTGATGACATTCATTCTCG
CGCGCGTCCCTACACGCCCGACAGGATCGCCAAGAGCCTTGGGACCGAGA
TGCCGACCAAGTCCGTCCTGATAAACCCCACCGCCGAGGGATCGCTGTCG
CAGAGCCGGTCCTTGAGGCTGGCGCTGGAGTACGCCGACGACCTCCAGAA
TGGGAAGCCGCTGGCCAACTACCTTTGGTTTAGCAAGTCCCCGAAGGTCA
ACCAGATCCCGCGCATGGTCAACCCGGAGGATAAGGGATGGCTCGAGAGG
ATCAACCTGTACGACCTGAAGGGGGCGGCACCCTCGTAGTGTTGGAGGGA
GAAGCGTCTG
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Coding sequence (CDS) from alignment at Scaffold_129:204648..209107+

>EsuBft95_7a-0001 ID=EsuBft95_7a-0001|Name=EsuBft95_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=774bp|location=Sequence derived from alignment at Scaffold_129:204648..209107+ (Ectocarpus subulatus male Bft15b)
ATGCAGTTCCAGCCGGCCCTTGATTCATACGTTGCCGGAGGAGGCCAGGG
GGGTGATGGGAAGGACGGGGACCTAGACAGCGCGGACGCCGAGCTGGCGC
GGGCCACGCAGTGGGCGGAGCGCTGCGCCTTTCCCTTCGAGAACTTCCTA
CCGTTGTTGCACCTCGCGAGAAGGCGAGGCCTGCCGATGGTCGCCTTGGG
AGTCGACAGCGAGAAGGTGTTCGACGTGATGCAGAACGGCATGGACTCGC
TCGGGGAGGACGACAGGAACGCGTACGTGTCCGACTTCAAGGGCTTCGTG
ACGTACGTGAGGGACAAGGGCTTCCAGGTCTACGCGGACAAACTGATCTT
CCCCTCGTACGACAGGCTCAAGGAGGCGGGGTTGTTGGGCAGCAAACCGC
CGACCAAGCCCAACTTCTTCGCCGCGAGAATCCTGGCTGACGAGGCTCTC
GCTTCTAAGAGGGAAGACCACGTTAAGTTCGGCTTCGGCGCTTCGGGGAG
AGCGGCAAGGATCGCCAAGAGCCTTGGGACCGAGATGCCGACCAAGTCCG
TCCTGATAAACCCCACCGCCGAGGGATCGCTGTCGCAGAGCCGGTCCTTG
AGGCTGGCGCTGGAGTACGCCGACGACCTCCAGAATGGGAAGCCGCTGGC
CAACTACCTTTGGTTTAGCAAGTCCCCGAAGGTCAACCAGATCCCGCGCA
TGGTCAACCCGGAGGATAAGGGATGGCTCGAGAGGATCAACCTGTACGAC
CTGAAGGGGGCGGCACCCTCGTAG
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