EsuBft95_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft95_2a-0001
Unique NameEsuBft95_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:141535..141938 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G8B3
ProteomeIdEsuBft95_2
Protein domainsIPR011989
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length36
Hectar predicted targeting categoryother localisation
Evalue1.03e-48
EggNOG OGsCOG5657@1|root,KOG2274@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameIPO9
KEGG rclassRC00002,RC00017
KEGG koko:K00876,ko:K20224
KEGG TC1.I.1
KEGG ReactionR00513,R00516,R00517,R00962,R00964,R00967,R00968,R00970,R01548,R01549,R01880,R02091,R02096,R02097,R02327,R02332,R02371,R02372,R08232
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0017016,GO:0017038,GO:0017076,GO:0019001,GO:0019899,GO:0022613,GO:0031224,GO:0031267,GO:0031647,GO:0031967,GO:0031975,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0035639,GO:0036094,GO:0042254,GO:0042393,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050821,GO:0051020,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061608,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EC2.7.1.48
DescriptionRan GTPase binding
COG categoryD
BRITEko00000,ko00001,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft95_2aEsuBft95_2aEctocarpus subulatus male Bft15bgeneScaffold_129 141535..141938 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_2a-0001-exonEsuBft95_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 141535..141888 +
EsuBft95_2a-0001-exonagat-exon-30650Ectocarpus subulatus male Bft15bexonScaffold_129 141930..141938 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_2a-0001-exonagat-five_prime_utr-15307Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 141535..141573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_2a-0001-cdsEsuBft95_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 141574..141888 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_2a-0001EsuBft95_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 141574..141938 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft95_2a-0001 ID=EsuBft95_2a-0001|Name=EsuBft95_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=363bp|location=Sequence derived from alignment at Scaffold_129:141535..141938+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGACGGTGTGCCAGCGTGCCGCGTGGTATACGGGCGAGATGGATGCAGT
GCTGTGCTCCGCGTTGTCCGCGGACAACACAGTCAGGCGGGGAGCGGAGG
CGGCGCTAAGCTACGCTAGGACGCAGCGAGGCTTCGCAATAGCGCTCGCG
AAGCAGCTCGCTTCCAACTACCATCCTCGTGGGGCTTATGTTGGAGATGG
AAATATGGCAAGGGCGGCACCGGCGGCGGAGAGGGAGCGGGACGGAATGT
GGATGCCCATGCGGCTTATGGCCGGGATGCTGCTGCAGCACTTCGTGAGG
GACCGGTGGGAGCTGGCCGACGATGCCGTGCTTCCCGCAGAGGACAAGAT
CCAGCAAGCGTAA
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protein sequence of EsuBft95_2a-0001

>EsuBft95_2 ID=EsuBft95_2|Name=EsuBft95_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=107bp
MDAVLCSALSADNTVRRGAEAALSYARTQRGFAIALAKQLASNYHPRGAY
VGDGNMARAAPAAERERDGMWMPMRLMAGMLLQHFVRDRWELADDAVLPA
EDKIQQA
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mRNA from alignment at Scaffold_129:141535..141938+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft95_2a-0001 ID=EsuBft95_2a-0001|Name=EsuBft95_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=404bp|location=Sequence derived from alignment at Scaffold_129:141535..141938+ (Ectocarpus subulatus male Bft15b)
TTGACGGTGTGCCAGCGTGCCGCGTGGTATACGGGCGAGATGGATGCAGT
GCTGTGCTCCGCGTTGTCCGCGGACAACACAGTCAGGCGGGGAGCGGAGG
CGGCGCTAAGCTACGCTAGGACGCAGCGAGGCTTCGCAATAGCGCTCGCG
AAGCAGCTCGCTTCCAACTACCATCCTCGTGGGGCTTATGTTGGAGATGG
AAATATGGCAAGGGCGGCACCGGCGGCGGAGAGGGAGCGGGACGGAATGT
GGATGCCCATGCGGCTTATGGCCGGGATGCTGCTGCAGCACTTCGTGAGG
GACCGGTGGGAGCTGGCCGACGATGCCGTGCTTCCCGCAGAGGACAAGAT
CCAGGTTAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGAGCAGCAGCAAGC
GTAA
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Coding sequence (CDS) from alignment at Scaffold_129:141535..141938+

>EsuBft95_2a-0001 ID=EsuBft95_2a-0001|Name=EsuBft95_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=324bp|location=Sequence derived from alignment at Scaffold_129:141535..141938+ (Ectocarpus subulatus male Bft15b)
ATGGATGCAGTGCTGTGCTCCGCGTTGTCCGCGGACAACACAGTCAGGCG
GGGAGCGGAGGCGGCGCTAAGCTACGCTAGGACGCAGCGAGGCTTCGCAA
TAGCGCTCGCGAAGCAGCTCGCTTCCAACTACCATCCTCGTGGGGCTTAT
GTTGGAGATGGAAATATGGCAAGGGCGGCACCGGCGGCGGAGAGGGAGCG
GGACGGAATGTGGATGCCCATGCGGCTTATGGCCGGGATGCTGCTGCAGC
ACTTCGTGAGGGACCGGTGGGAGCTGGCCGACGATGCCGTGCTTCCCGCA
GAGGACAAGATCCAGCAAGCGTAA
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