EsuBft95_22a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft95_22a-0001
Unique NameEsuBft95_22a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:376747..378984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft95_22
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length96
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22aEsuBft95_22aEctocarpus subulatus male Bft15bgeneScaffold_129 376747..378984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22a-0001EsuBft95_22Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 376767..378922 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22a-0001-exonEsuBft95_22a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 376747..376840 +
EsuBft95_22a-0001-exonagat-exon-30784Ectocarpus subulatus male Bft15bexonScaffold_129 377579..377694 +
EsuBft95_22a-0001-exonagat-exon-30783Ectocarpus subulatus male Bft15bexonScaffold_129 378228..378984 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22a-0001-exonagat-five_prime_utr-15306Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_129 376747..376766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22a-0001-cdsEsuBft95_22a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 376767..376840 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft95_22a-0001-exonagat-three_prime_utr-23515Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 378923..378984 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft95_22a-0001 ID=EsuBft95_22a-0001|Name=EsuBft95_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=967bp|location=Sequence derived from alignment at Scaffold_129:376747..378984+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGGAACTATATCGGCGGAGCATGCTCAGCGCAAGGGCGATACCTCGATCC
ACGGAAGTCAAACACTTGGTGATATTGGATGCTGCCATGGATAGCGAGGT
GTCGGTGACACCGATGGACGTGGAACCCAATGACAACGAGAGAGGTCGCG
GGCGTGGAGGTTCTCTAGGTGTCTCGAACAAGAGCACACTTCCGACACTT
CCACCTACAGGGGTTACCCCGGCTGCAGGGGTCACCCCTGCTGCGCCCGT
TGCTGCCGGGAGGATGTCGCGCAGAGCTTCAGCGGGAGACGGGGCGCATG
CGCAAGGCGGCAACTCCTGTAGTGGCAAAAGCACACGGCGCCGTGCGCAG
AGCATGCCACCTCCACCTCCGAACAGGCCCAGGAAGAAGAGAAAAAGCGG
TGCGTGCCCACTCGACTGTGACCACCACGGCGTGTTTGTCGGGGGAGTGT
ACGTGTGTCACGCGTGCGGCCTGGAGAGTGACAAGTGGGTTCACCTGCAG
CCAGACAAGGTCGGGGAGGCGCGCGAGTGGTGGGCATCAGGCCAGAGATG
GGAGGATAGCTGTGTCGCGGAGGACTACGAGCCAAGCAGCCTTTGCATTT
GCAGCAGGCGCCAGTGCTTCTTTCAGCAGCACAAGCGATGGCTTGAAGCA
AGAACCGTAGAAGAAAAGAAGAAGACGTGTGCGATCTGCAAGATGCGCGG
AGGCCATAAAAATCACTGGCACCACCCTGGTGGAATGCTTATAGTGCTAA
CTTCGTGGTTCAGGTCGGGCCGATCCAGCGTTGACGCGTTTTTGAACAGT
GGCGAGGATTTGACCCTCCTCAGTGACATCTGCAATCGGTGCTTTATGGA
AGGCTACAACAACAAGGCTAGGATCCCCCCGGACGCGAGGCCAACGACAG
GTTAGCTACATTATGATTTGCGGTCGCCGGCTTCCCATGCGGCTAGTTGG
GGAGCGACTTGGCCGGG
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protein sequence of EsuBft95_22a-0001

>EsuBft95_22 ID=EsuBft95_22|Name=EsuBft95_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=294bp
MLSARAIPRSTEVKHLVILDAAMDSEVSVTPMDVEPNDNERGRGRGGSLG
VSNKSTLPTLPPTGVTPAAGVTPAAPVAAGRMSRRASAGDGAHAQGGNSC
SGKSTRRRAQSMPPPPPNRPRKKRKSGACPLDCDHHGVFVGGVYVCHACG
LESDKWVHLQPDKVGEAREWWASGQRWEDSCVAEDYEPSSLCICSRRQCF
FQQHKRWLEARTVEEKKKTCAICKMRGGHKNHWHHPGGMLIVLTSWFRSG
RSSVDAFLNSGEDLTLLSDICNRCFMEGYNNKARIPPDARPTTG
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mRNA from alignment at Scaffold_129:376747..378984+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft95_22a-0001 ID=EsuBft95_22a-0001|Name=EsuBft95_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2238bp|location=Sequence derived from alignment at Scaffold_129:376747..378984+ (Ectocarpus subulatus male Bft15b)
CGGAACTATATCGGCGGAGCATGCTCAGCGCAAGGGCGATACCTCGATCC
ACGGAAGTCAAACACTTGGTGATATTGGATGCTGCCATGGATAGGTAAGC
GAGGGGTGTTGTGGCCCTCAAACAGAGAGCTAGAGGTGGTTGCAAGTAAG
AAATCGGCACCGCGGAATTGCGTGTGGAACATGCTGTTTTGCTGCGGCGG
GTTTGTGTCGCTCTGGTCTGCTGCCCACACATGTGTCTTGCGACTCGCTG
GTGCCTGAGGGGACAGACATAGAGCTAGTTCCGAGGACCGCGAGTGTAGC
AGTGAAACCGCGAGTGTAGTAGTGCGAGCGCAACCCGTGGTTGCGCCGTG
CACCTGTGAGAAACGAGACGATGAGTGTCGTACAGCAGTACAGCAGCAGA
GATCTCGAGACAGACCGAAGAAACACGATCTTGAAATCTCGCTGTTGTTG
ATGTCAACGCTGCGATGGGGCGTCGAGAGCCTCCTTACCTGCGGTTCTTC
AGCGTTGGTTCGAACGATAAGCTGATTTGTGGTTGCCCGGTGGACTAGGA
GGTTGGGGTATACACGAGCGACGAGTTACACCAGCGTTTCCAATAGCAAC
GCCGTTGTGTATTTATTTGTGGTCTGCTGCGAAGTTTCTGCTGGCCCCTA
TGTATGTATTATGTATGTAGCAGCAGTTACGAGCTTGCCCGAACCACTGT
TCAGGGCAGGACTCACCCTGGACACCATTGCCGCGACGAATCCTTGGGAG
AACTTCCTGCGATACGGTCGTCATTCGATGTTTTGTGTTCACGGATGTAT
TTGTATTGTCCCGCACCCCTCTCTCCCAGCAGCGAGGTGTCGGTGACACC
GATGGACGTGGAACCCAATGACAACGAGAGAGGTCGCGGGCGTGGAGGTT
CTCTAGGTGTCTCGAACAAGAGCACACTTCCGACACTTCCACCTACAGGT
GAGGGTTAGAGGTAAATTAGACAAACGTTCGCTTCCCGACGGTGGTTGAT
GTGGATGCGCCGACAAGCACGCCCGCGTGGCATGCATGGAGGTCCGGACG
GTAGTGTACACAGGTCTAAGATAGTGACTCGCGTTACCTGAACCCGTGGC
ATTTAGTAATATGAATAACCGAGGTAGGTACGGCTTGATTTCTAAACCTA
GGTAGGTACGACCGAGCCATGAGGAAAGAAACCATGAAAGATGGGCAGTG
TTGCTACAGAGCGCGCCCGCAAGTAGGCAACGGTCGGCTCAGTTAGTTAT
TTTCGCCGCCGATGTCAACCTTATTTTTTTGATAGTCTTTCAGTGTAGGA
TCAAATGATCGAGCTGTGCTTCTTTGCGCAATGTTTTGGTATCTCCCGGA
AATCTGAGCCTCCGTTTCATGTGTTTTGAACCTTTTCTTGCCTGCGGGCG
CCCTCTGGGTACACGAAACAATTGATTGATGAACTGGACACTCGTGGGTT
TGCTGCTCACCCGATTACGACATTTGGGCAGGGGTTACCCCGGCTGCAGG
GGTCACCCCTGCTGCGCCCGTTGCTGCCGGGAGGATGTCGCGCAGAGCTT
CAGCGGGAGACGGGGCGCATGCGCAAGGCGGCAACTCCTGTAGTGGCAAA
AGCACACGGCGCCGTGCGCAGAGCATGCCACCTCCACCTCCGAACAGGCC
CAGGAAGAAGAGAAAAAGCGGTGCGTGCCCACTCGACTGTGACCACCACG
GCGTGTTTGTCGGGGGAGTGTACGTGTGTCACGCGTGCGGCCTGGAGAGT
GACAAGTGGGTTCACCTGCAGCCAGACAAGGTCGGGGAGGCGCGCGAGTG
GTGGGCATCAGGCCAGAGATGGGAGGATAGCTGTGTCGCGGAGGACTACG
AGCCAAGCAGCCTTTGCATTTGCAGCAGGCGCCAGTGCTTCTTTCAGCAG
CACAAGCGATGGCTTGAAGCAAGAACCGTAGAAGAAAAGAAGAAGACGTG
TGCGATCTGCAAGATGCGCGGAGGCCATAAAAATCACTGGCACCACCCTG
GTGGAATGCTTATAGTGCTAACTTCGTGGTTCAGGTCGGGCCGATCCAGC
GTTGACGCGTTTTTGAACAGTGGCGAGGATTTGACCCTCCTCAGTGACAT
CTGCAATCGGTGCTTTATGGAAGGCTACAACAACAAGGCTAGGATCCCCC
CGGACGCGAGGCCAACGACAGGTTAGCTACATTATGATTTGCGGTCGCCG
GCTTCCCATGCGGCTAGTTGGGGAGCGACTTGGCCGGG
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Coding sequence (CDS) from alignment at Scaffold_129:376747..378984+

>EsuBft95_22a-0001 ID=EsuBft95_22a-0001|Name=EsuBft95_22a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=885bp|location=Sequence derived from alignment at Scaffold_129:376747..378984+ (Ectocarpus subulatus male Bft15b)
ATGCTCAGCGCAAGGGCGATACCTCGATCCACGGAAGTCAAACACTTGGT
GATATTGGATGCTGCCATGGATAGCGAGGTGTCGGTGACACCGATGGACG
TGGAACCCAATGACAACGAGAGAGGTCGCGGGCGTGGAGGTTCTCTAGGT
GTCTCGAACAAGAGCACACTTCCGACACTTCCACCTACAGGGGTTACCCC
GGCTGCAGGGGTCACCCCTGCTGCGCCCGTTGCTGCCGGGAGGATGTCGC
GCAGAGCTTCAGCGGGAGACGGGGCGCATGCGCAAGGCGGCAACTCCTGT
AGTGGCAAAAGCACACGGCGCCGTGCGCAGAGCATGCCACCTCCACCTCC
GAACAGGCCCAGGAAGAAGAGAAAAAGCGGTGCGTGCCCACTCGACTGTG
ACCACCACGGCGTGTTTGTCGGGGGAGTGTACGTGTGTCACGCGTGCGGC
CTGGAGAGTGACAAGTGGGTTCACCTGCAGCCAGACAAGGTCGGGGAGGC
GCGCGAGTGGTGGGCATCAGGCCAGAGATGGGAGGATAGCTGTGTCGCGG
AGGACTACGAGCCAAGCAGCCTTTGCATTTGCAGCAGGCGCCAGTGCTTC
TTTCAGCAGCACAAGCGATGGCTTGAAGCAAGAACCGTAGAAGAAAAGAA
GAAGACGTGTGCGATCTGCAAGATGCGCGGAGGCCATAAAAATCACTGGC
ACCACCCTGGTGGAATGCTTATAGTGCTAACTTCGTGGTTCAGGTCGGGC
CGATCCAGCGTTGACGCGTTTTTGAACAGTGGCGAGGATTTGACCCTCCT
CAGTGACATCTGCAATCGGTGCTTTATGGAAGGCTACAACAACAAGGCTA
GGATCCCCCCGGACGCGAGGCCAACGACAGGTTAG
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