EsuBft95_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft95_17a-0001
Unique Name	EsuBft95_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:337930..341921 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft95_17
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	35
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft95_17a	EsuBft95_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 337930..341921 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_17a-0001-exon	EsuBft95_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 337930..337953 +
EsuBft95_17a-0001-exon	agat-exon-30756	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 341595..341921 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_17a-0001-cds	EsuBft95_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 337930..337953 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_17a-0001-exon	agat-three_prime_utr-23510	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 341697..341921 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_17a-0001	EsuBft95_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 337930..341696 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:337930..341921+
coding sequence from alignment at Scaffold_129:337930..341921+

spliced messenger RNA

>EsuBft95_17a-0001 ID=EsuBft95_17a-0001|Name=EsuBft95_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=351bp|location=Sequence derived from alignment at Scaffold_129:337930..341921+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAGACCACACTGTACAAAGGGGACGGGGAGGAGGAGGAGGAGGA
GGAGGAGGGGCCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTGGTAG
ACGTGGACATGAGCGACGGGCAATAGACGACATGAGAGATGAAACACGAA
AGAGTAGGCTTCGGAGGCGTATGGTATGAAATAGTACTCTTTTTCTCAAT
GATGACTAGTGATAAACCGGTGCATTACTGCGACTAGACACAGAGTTATT
TACTTCCAAAGAACACAGATAAATGGACGAGCCCCGATCCATCTTGCGCA
ACAAGCATAGGATGCACGAGAGGGTGTAAAAAGGGTACCTGTACGGGCTA
G

protein sequence of EsuBft95_17a-0001

>EsuBft95_17 ID=EsuBft95_17|Name=EsuBft95_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=41bp
MEQTTLYKGDGEEEEEEEEGPGGGGASAEAGVVDVDMSDGQ

mRNA from alignment at Scaffold_129:337930..341921+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft95_17a-0001 ID=EsuBft95_17a-0001|Name=EsuBft95_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3992bp|location=Sequence derived from alignment at Scaffold_129:337930..341921+ (Ectocarpus subulatus male Bft15b)
ATGGAGCAGACCACACTGTACAAAGTAAACAAAATCCGAAGAGCTTTTTT
TGAAGGTTGAAACGACCGCATAGCCTGCGTTATCACAGGTAGGCCTGTCC
TCCATCGGCCGCGGCCGAAAGAGCCGATTTCTGAAAATTTCGGCCGGAAA
ACGGCCGCAAAACAAAACGGCCGATTTTGCAAACAAAGTGGCCGATTTTG
CAAACAAAGCAGCCGATTTTGGCCAGGGGATAGCCGAATGTCAGTCGGCT
GCGGCCGATTCCTAGTCGGCTACGGCCGATTCCAAATCGGCCACGGCCAA
TGTCCGATTTCAATGGGCCACCCCCCTCCCCCCCCCATAATAATTCAATG
TTGTGGGGAGTCCTACGTACCTACCTACCCTTTTCGAACATTTTTGCACT
TGCGCGGTGGTCTCCGCGTCTCCGCACTTGAAAAAAAAAAAAACACAAAA
AACTTCCAGCTTCCAGCTCGCCCATAGCTCGCGGCTCGCAGCACGCAGTC
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NNNNNNNNNNNNNAGGGGGACGGGGAGGAGGAGGAGGAGGAGGAGGAGGG
GCCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTGGTAGACGTGGACA
TGAGCGACGGGCAATAGACGACATGAGAGATGAAACACGAAAGAGTAGGC
TTCGGAGGCGTATGGTATGAAATAGTACTCTTTTTCTCAATGATGACTAG
TGATAAACCGGTGCATTACTGCGACTAGACACAGAGTTATTTACTTCCAA
AGAACACAGATAAATGGACGAGCCCCGATCCATCTTGCGCAACAAGCATA
GGATGCACGAGAGGGTGTAAAAAGGGTACCTGTACGGGCTAG

Coding sequence (CDS) from alignment at Scaffold_129:337930..341921+

>EsuBft95_17a-0001 ID=EsuBft95_17a-0001|Name=EsuBft95_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=126bp|location=Sequence derived from alignment at Scaffold_129:337930..341921+ (Ectocarpus subulatus male Bft15b)
ATGGAGCAGACCACACTGTACAAAGGGGACGGGGAGGAGGAGGAGGAGGA
GGAGGAGGGGCCTGGCGGTGGAGGGGCTAGCGCGGAGGCGGGGGTGGTAG
ACGTGGACATGAGCGACGGGCAATAG