EsuBft95_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft95_13a-0001
Unique Name	EsuBft95_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:271055..274869 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FJB4
ProteomeId	EsuBft95_13
Protein domains	TRANSMEMBRANE
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	CYTOPLASMIC_DOMAIN
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Max annot lvl	2759\|Eukaryota
Length	232
Hectar predicted targeting category	other localisation
Evalue	1.7e-269
EggNOG OGs	COG4043@1\|root,2QW79@2759\|Eukaryota
Ec32 ortholog description	conserved unknown protein
Ec32 ortholog	Ec-12_008170.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a	EsuBft95_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 271055..274869 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a-0001	EsuBft95_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 271148..274093 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a-0001-exon	agat-exon-30713	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 271055..271444 +
EsuBft95_13a-0001-exon	agat-exon-30714	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 271669..271686 +
EsuBft95_13a-0001-exon	agat-exon-30712	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 272120..272161 +
EsuBft95_13a-0001-exon	EsuBft95_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 272993..274869 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a-0001-exon	agat-five_prime_utr-15301	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_129 271055..271147 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a-0001-cds	EsuBft95_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 271148..271444 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft95_13a-0001-exon	agat-three_prime_utr-23506	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 274094..274869 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:271055..274869+
coding sequence from alignment at Scaffold_129:271055..274869+

spliced messenger RNA

>EsuBft95_13a-0001 ID=EsuBft95_13a-0001|Name=EsuBft95_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2327bp|location=Sequence derived from alignment at Scaffold_129:271055..274869+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCAACCATCAACCCTCCACCTCACTGGTTTCATCGGCGCCGTTCGCCCAA
ACGTGGTACAGGGTAGGCTTTTGGTAGACATCGTCAACCTCTCATGGGAG
CACGGCCTGATCTCAATGAGGGCGTCACGTTGCTGGTTTCGTGGGCGCTG
AGACTGGCTCTCAAGCAACCGGCTCATCAGGGGGACGAAGTTGCGCAGCA
GCTATTGTGTGTCGGAGATTCCCTGGATGTGCTTCGATCTGAAGCAGCCG
CATTGCCGAGGGATGCACCAAGGGTAGGTCTCATCGTCCAGCCATATGTT
TGGGCCCTGGCTCTTGCGATGGTCGACCTCGCCAATCGGCGACGCAAGGG
CATATACAGGCGAGCGGACATGAATGGAGTGATAAGTAAGGTGGAACGAC
AGCCTCAGGTTTGCGCGTTCATTGTGCAATTCTCTCTGCCGATACACCTG
GGCATTCTATCGACAAGACGCACTCGTTGGTCATCGATTCTACTTTCACC
CATGTCTGAAGCCTACCTTGTTGCGCTTCCTGTCCTGCGTCCGTGGTTGC
AAAGGTGCTTTGCCGACAAGGGATCCATCACCTCTCTAGAAACTGGCCAC
GTGGCGGAAGCAATCGAACACGAGGCATACTCCTTTGTGGAAATGGCTTC
CGAACTCTTCGCTGCAGGCTGTACTGGAGCAGGGAAGCGGACTGGCTTCG
GCTGTTCCGCGGCGCCTCTTGCGCCGCTGTTCGGGGCTTGCGAAATGTGT
GAGACAACCGCCGTCAAGTGCCACCGGTTTTTTCCCACGCCCTGTCGGCC
GGAGCTGTGTGTCTGTACGCATGGCTCTTCCCACCATGCCTGTATTGATC
CCCGCGTCACCCCGATTTTGTTACCGGCTTTGATGGAGCGGCCGGGAGAG
AATGAGGTCGGAGCTCGGGCCACTTGTGACTCCCGCGCCACACAATCGCC
ATCGGCTCGACGGAACCTTGCCGCTGTGGACCTCCTTCGACGTGGTGAGA
GTTTTATTTCGTCGATTGGACAGGCAGGAATCCGAGACCTGTTGGGACTG
AAGCGGACGGCGGGAAGCATCGATGGTTGCCTTCCCCCCTCTCGCCGCGT
CCTATTGAAGGCCATCAACAAGCCACACGTGTTGGTGGTGAGCGAAGGGT
GCGCAGTCACGCGTTCCTCAGAATCATGTCTTGCGACTGATGGGAGCGAC
AAGAGAAGCGAGGGACGCGCGATACGACCGAGGGCTACGACCGCCTGCAA
TTTGACGGTGGGTGGCCGCGCTCTTTGCAAGCATGCCGTGCGCGCAAGAG
AGGGCTGGTGGGGAGAGTGTGGGGGTACAGAAGCAGAAAAAAATGACCGC
GCCGAGGAGGTGACGTTGCGATTGCTGGCGGGGGCCACGTGGGTAAACCT
TCACGTGTTCGGAGGAGGAGGGAAAGATGGCGTGCTCGAGGTACGAGAAG
AGTCGGGCTATGGAGCCCGTTGGAGTGCAGACGGTGCTGTATTTCGAGGG
TTCGTTGAGCCTCATATGAAGGACGGGCACGAGAAGGGCTGGAGACATTG
ATTTGGTTTCGCTTGCCGTGAAACGCAATCGACGTGGCTGGTGTACATCC
GGTATCTGTATGTTTCTTGGAGGCGCGTTCCAGCGGACGGCGACAAATCA
TCTGACACAGGTGCCCAGTTTTGAGTGTACTGAAGTGCAACTGGAACATG
GGCAGCATATCCTCATCGAGTATCTTGTTCCGGATGACCCCTGACCGGAG
TTCTTCGATTCAAGGGGCGAGGCCATATAGTGTGCAGTCTATGCTGCGAA
AACGGTATTATCGATGGAATTGCGGCAGAACATGTGATGCGTTTATTTCC
CGGTCTGATGTCGTACTCTTGTGTGCTCGCCTGTCTTTGTCGTTCACGTA
TGCGTGTGATTGGGCAGTGACCTGCCCACATCTTGAGGTGTTGTCGGACC
CGGCACAGCACAAACGTTCCGATGGCTGTGTACTACGACACGTGTCCGCT
ATACGCCGTTCATCGGTCTTGTTTTTGTTCGTCTAGCCTTGATTGTACCG
AGGAATTGCACATGTTGTACGGGCTGATACCATGGTCAGGCAATTGGAAT
GAAGACAAGCGAATATATTGCTGACTGTGAATGTTGAGAGAACGACGACA
ATGTCAATGTCCGTACAAGGATTCGGGACGACCGAAAGCTCATGTAGACA
GACAAATGCGAAGGACATCGTGAATTATTCGAGCAGTTGGCCGAATGGAA
TGAAGCCGAACTGCATGCTAGACATGACATAAACGTTCACCACTTAACCT
TGCTGGGAGGCCTTGGCTGCAAGTGCG

protein sequence of EsuBft95_13a-0001

>EsuBft95_13 ID=EsuBft95_13|Name=EsuBft95_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=485bp
MGARPDLNEGVTLLVSWALRLALKQPAHQGDEVAQQLLCVGDSLDVLRSE
AAALPRDAPRVGLIVQPYVWALALAMVDLANRRRKGIYRRADMNGVISKV
ERQPQVCAFIVQFSLPIHLGILSTRRTRWSSILLSPMSEAYLVALPVLRP
WLQRCFADKGSITSLETGHVAEAIEHEAYSFVEMASELFAAGCTGAGKRT
GFGCSAAPLAPLFGACEMCETTAVKCHRFFPTPCRPELCVCTHGSSHHAC
IDPRVTPILLPALMERPGENEVGARATCDSRATQSPSARRNLAAVDLLRR
GESFISSIGQAGIRDLLGLKRTAGSIDGCLPPSRRVLLKAINKPHVLVVS
EGCAVTRSSESCLATDGSDKRSEGRAIRPRATTACNLTVGGRALCKHAVR
AREGWWGECGGTEAEKNDRAEEVTLRLLAGATWVNLHVFGGGGKDGVLEV
REESGYGARWSADGAVFRGFVEPHMKDGHEKGWRH

mRNA from alignment at Scaffold_129:271055..274869+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft95_13a-0001 ID=EsuBft95_13a-0001|Name=EsuBft95_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3815bp|location=Sequence derived from alignment at Scaffold_129:271055..274869+ (Ectocarpus subulatus male Bft15b)
TCAACCATCAACCCTCCACCTCACTGGTTTCATCGGCGCCGTTCGCCCAA
ACGTGGTACAGGGTAGGCTTTTGGTAGACATCGTCAACCTCTCATGGGAG
CACGGCCTGATCTCAATGAGGGCGTCACGTTGCTGGTTTCGTGGGCGCTG
AGACTGGCTCTCAAGCAACCGGCTCATCAGGGGGACGAAGTTGCGCAGCA
GCTATTGTGTGTCGGAGATTCCCTGGATGTGCTTCGATCTGAAGCAGCCG
CATTGCCGAGGGATGCACCAAGGGTAGGTCTCATCGTCCAGCCATATGTT
TGGGCCCTGGCTCTTGCGATGGTCGACCTCGCCAATCGGCGACGCAAGGG
CATATACAGGCGAGCGGACATGAATGGAGTGATAAGTAAGGTGTCAAGAG
ATATCACACCCCCGGACCGATAGTCGAAGCTCGATTGCTCCACAGTACAG
GGAGTGGCGGTGCCGAAGAGGGCGGCGTTGGAACCGTCTCATCCAGAGCT
TTCCGTTAACGTATGGTTTGGTGTGTGCATCCTCCCCGTGGTAGCTGTAG
ACACGGCTGTCCTATCCTTCTGTGGAAGTGGGTTCTACTATCATGAAAGA
GGGAAGGACCACAGGTGGAACGACAGCCTCAGGTGATTCCAGCCGAACTA
TATGCTGTCACCAACCTACGACGTACTTCATAGACTATGCATGTTTACAT
GAATCAGTAGTCAAAACACGACAATGTTCGCGTCTACTCCCATACGGGCA
CAGCGACCACAAATATTTAAGCAACAATCAAATGGTATACCGCACCTGTG
AAACAAAACGGCACACGAGGAACTCACAGCAGAAATGGACCCGGAGGCCC
CACGCTGGTTGGCCCAGACCACCGAGTCCCGTTTTCTGGCGGCTCAAGTG
GAGAGTACGGTGGTGGGGCTTCTCGAGGCGACTTACTATACCATTTCGGT
CACCGCGATCACTGTCGCAAACAATGACCGGGCGCAGTGTTATCTCAACC
AAGGGTTATCTCAACATCCCAGGAGTTGTGGGGAGAACCCACCTACGCCG
GCAGCACCATACTAGGTTTGCGCGTTCATTGTGCAATTCTCTCTGCCGAT
ACACCTGGTAAGTTGTACAGTCCGATAAATAGTATCATGGTAGGTTTGAA
GGTTGCACGTCTATGTGCAATAATAATTAGACCAACACATAGACATATGT
GTACCACGGAGCGCGTGTGTGGTTGTCCAAAAGAGGGTAGAGTTGGTCTG
TGCCTGAACACAGGGCAGGGACTAGCAGATCTCGGAACACGTGTGGCGGG
CGCGCGCGGCGTTGGCGGCGGCGGCGGCATGTTTTGCCCGGTTCTGCGTT
GGCAGGGCGAGGTGTTGGGAACACGGATGAGGTTGGAGAAATCAAGAGGC
CTCGGTGCATTGTAGTGCAATGTCGTTGGCCTTCGGCTCGTGACCTTGAT
TGGGTTGGATCATCTGCTGTGTTTGTATTGGAGTCCACGGTTGATGCCAG
TCTGCACTTGATCGGGAGGTGCGACGGTTGCACCAGCCGAACTGTCTTTG
TTCGGGAGTTTTATTGCGACAATACCCGGCGACCGGGGCGAGAGAGAACG
CTGCAAGCCGACCCGAGAGGCCTGGTCGCGGTAGTCTCCACTTGAGCTGT
CAGAAAATGACACTCGGTGGTCTTGGCAAACCAGGGTCAGGCATCGGGGT
CTATTCCTGTTGTTAGACAGTTCTTTGTGTTTTGTTCTATCGCACTGCCT
CTCTCATCCCGTGCAAATTGTTTTCATTGCGTAGATGGCTACTTTCCTAC
CGATCAATGTCATCACGATGCTCATGCCTTTTCTGTGGGTCATGTTTTTC
GCGCCATCGAGATTCTCGAGCTCAGAATATTTAGCTATTGTGGTGAAGTG
GCCAAGCACACGCGTAGCATCATTTCCTTCCATTTCAGGGCATTCTATCG
ACAAGACGCACTCGTTGGTCATCGATTCTACTTTCACCCATGTCTGAAGC
CTACCTTGTTGCGCTTCCTGTCCTGCGTCCGTGGTTGCAAAGGTGCTTTG
CCGACAAGGGATCCATCACCTCTCTAGAAACTGGCCACGTGGCGGAAGCA
ATCGAACACGAGGCATACTCCTTTGTGGAAATGGCTTCCGAACTCTTCGC
TGCAGGCTGTACTGGAGCAGGGAAGCGGACTGGCTTCGGCTGTTCCGCGG
CGCCTCTTGCGCCGCTGTTCGGGGCTTGCGAAATGTGTGAGACAACCGCC
GTCAAGTGCCACCGGTTTTTTCCCACGCCCTGTCGGCCGGAGCTGTGTGT
CTGTACGCATGGCTCTTCCCACCATGCCTGTATTGATCCCCGCGTCACCC
CGATTTTGTTACCGGCTTTGATGGAGCGGCCGGGAGAGAATGAGGTCGGA
GCTCGGGCCACTTGTGACTCCCGCGCCACACAATCGCCATCGGCTCGACG
GAACCTTGCCGCTGTGGACCTCCTTCGACGTGGTGAGAGTTTTATTTCGT
CGATTGGACAGGCAGGAATCCGAGACCTGTTGGGACTGAAGCGGACGGCG
GGAAGCATCGATGGTTGCCTTCCCCCCTCTCGCCGCGTCCTATTGAAGGC
CATCAACAAGCCACACGTGTTGGTGGTGAGCGAAGGGTGCGCAGTCACGC
GTTCCTCAGAATCATGTCTTGCGACTGATGGGAGCGACAAGAGAAGCGAG
GGACGCGCGATACGACCGAGGGCTACGACCGCCTGCAATTTGACGGTGGG
TGGCCGCGCTCTTTGCAAGCATGCCGTGCGCGCAAGAGAGGGCTGGTGGG
GAGAGTGTGGGGGTACAGAAGCAGAAAAAAATGACCGCGCCGAGGAGGTG
ACGTTGCGATTGCTGGCGGGGGCCACGTGGGTAAACCTTCACGTGTTCGG
AGGAGGAGGGAAAGATGGCGTGCTCGAGGTACGAGAAGAGTCGGGCTATG
GAGCCCGTTGGAGTGCAGACGGTGCTGTATTTCGAGGGTTCGTTGAGCCT
CATATGAAGGACGGGCACGAGAAGGGCTGGAGACATTGATTTGGTTTCGC
TTGCCGTGAAACGCAATCGACGTGGCTGGTGTACATCCGGTATCTGTATG
TTTCTTGGAGGCGCGTTCCAGCGGACGGCGACAAATCATCTGACACAGGT
GCCCAGTTTTGAGTGTACTGAAGTGCAACTGGAACATGGGCAGCATATCC
TCATCGAGTATCTTGTTCCGGATGACCCCTGACCGGAGTTCTTCGATTCA
AGGGGCGAGGCCATATAGTGTGCAGTCTATGCTGCGAAAACGGTATTATC
GATGGAATTGCGGCAGAACATGTGATGCGTTTATTTCCCGGTCTGATGTC
GTACTCTTGTGTGCTCGCCTGTCTTTGTCGTTCACGTATGCGTGTGATTG
GGCAGTGACCTGCCCACATCTTGAGGTGTTGTCGGACCCGGCACAGCACA
AACGTTCCGATGGCTGTGTACTACGACACGTGTCCGCTATACGCCGTTCA
TCGGTCTTGTTTTTGTTCGTCTAGCCTTGATTGTACCGAGGAATTGCACA
TGTTGTACGGGCTGATACCATGGTCAGGCAATTGGAATGAAGACAAGCGA
ATATATTGCTGACTGTGAATGTTGAGAGAACGACGACAATGTCAATGTCC
GTACAAGGATTCGGGACGACCGAAAGCTCATGTAGACAGACAAATGCGAA
GGACATCGTGAATTATTCGAGCAGTTGGCCGAATGGAATGAAGCCGAACT
GCATGCTAGACATGACATAAACGTTCACCACTTAACCTTGCTGGGAGGCC
TTGGCTGCAAGTGCG

Coding sequence (CDS) from alignment at Scaffold_129:271055..274869+

>EsuBft95_13a-0001 ID=EsuBft95_13a-0001|Name=EsuBft95_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1458bp|location=Sequence derived from alignment at Scaffold_129:271055..274869+ (Ectocarpus subulatus male Bft15b)
ATGGGAGCACGGCCTGATCTCAATGAGGGCGTCACGTTGCTGGTTTCGTG
GGCGCTGAGACTGGCTCTCAAGCAACCGGCTCATCAGGGGGACGAAGTTG
CGCAGCAGCTATTGTGTGTCGGAGATTCCCTGGATGTGCTTCGATCTGAA
GCAGCCGCATTGCCGAGGGATGCACCAAGGGTAGGTCTCATCGTCCAGCC
ATATGTTTGGGCCCTGGCTCTTGCGATGGTCGACCTCGCCAATCGGCGAC
GCAAGGGCATATACAGGCGAGCGGACATGAATGGAGTGATAAGTAAGGTG
GAACGACAGCCTCAGGTTTGCGCGTTCATTGTGCAATTCTCTCTGCCGAT
ACACCTGGGCATTCTATCGACAAGACGCACTCGTTGGTCATCGATTCTAC
TTTCACCCATGTCTGAAGCCTACCTTGTTGCGCTTCCTGTCCTGCGTCCG
TGGTTGCAAAGGTGCTTTGCCGACAAGGGATCCATCACCTCTCTAGAAAC
TGGCCACGTGGCGGAAGCAATCGAACACGAGGCATACTCCTTTGTGGAAA
TGGCTTCCGAACTCTTCGCTGCAGGCTGTACTGGAGCAGGGAAGCGGACT
GGCTTCGGCTGTTCCGCGGCGCCTCTTGCGCCGCTGTTCGGGGCTTGCGA
AATGTGTGAGACAACCGCCGTCAAGTGCCACCGGTTTTTTCCCACGCCCT
GTCGGCCGGAGCTGTGTGTCTGTACGCATGGCTCTTCCCACCATGCCTGT
ATTGATCCCCGCGTCACCCCGATTTTGTTACCGGCTTTGATGGAGCGGCC
GGGAGAGAATGAGGTCGGAGCTCGGGCCACTTGTGACTCCCGCGCCACAC
AATCGCCATCGGCTCGACGGAACCTTGCCGCTGTGGACCTCCTTCGACGT
GGTGAGAGTTTTATTTCGTCGATTGGACAGGCAGGAATCCGAGACCTGTT
GGGACTGAAGCGGACGGCGGGAAGCATCGATGGTTGCCTTCCCCCCTCTC
GCCGCGTCCTATTGAAGGCCATCAACAAGCCACACGTGTTGGTGGTGAGC
GAAGGGTGCGCAGTCACGCGTTCCTCAGAATCATGTCTTGCGACTGATGG
GAGCGACAAGAGAAGCGAGGGACGCGCGATACGACCGAGGGCTACGACCG
CCTGCAATTTGACGGTGGGTGGCCGCGCTCTTTGCAAGCATGCCGTGCGC
GCAAGAGAGGGCTGGTGGGGAGAGTGTGGGGGTACAGAAGCAGAAAAAAA
TGACCGCGCCGAGGAGGTGACGTTGCGATTGCTGGCGGGGGCCACGTGGG
TAAACCTTCACGTGTTCGGAGGAGGAGGGAAAGATGGCGTGCTCGAGGTA
CGAGAAGAGTCGGGCTATGGAGCCCGTTGGAGTGCAGACGGTGCTGTATT
TCGAGGGTTCGTTGAGCCTCATATGAAGGACGGGCACGAGAAGGGCTGGA
GACATTGA