|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LF46 |
| ProteomeId | EsuBft957_9 |
| Protein domains | IPR027417 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 148 |
| Evalue | 3.14e-231 |
| EggNOG OGs | 2CYK8@1|root,2S4YE@2759|Eukaryota |
| Ec32 ortholog description | LRR-GTPase of the ROCO family, putative pseudogene |
| Ec32 ortholog | Ec-01_001800.3 |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 |
| KEGG ko | ko:K01188 |
| KEGG Reaction | R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 |
| KEGG Pathway | ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 |
| GOs | GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 |
| EC | 3.2.1.21 |
| CAZy | GH1 |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1486bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTCGCCTACACGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGT
TTGCGTGCTCGTGTGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCG
AACATTGTGGTGGGGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGC
GTATGCGATTGGCTGCGATCGATATCTCTACGGGTTCCCGACAACGACGT
CATTCTCGTCGCAACCAAANTAGAATTGCGCATATGCGATTGGCTGCGAT
TGATATCTCGACGGGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAG
TGTGACCTGGCGGGTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAA
GTCCTGTCGAATGTGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCG
TTCGGTTGGAGTCCCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTT
GATGAGCATGGCGACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTG
GGCATGCGGCTGGCGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTC
TTCACCGGCTCGTCAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTC
TTCCTCGCAGCTGGGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCAT
GGACGATCCCGTGGAGGTGGTAGTGCGCATGTCTCCCGACCCCGACAGGG
AGGACGCGGCGGAAACGGCAGAGGGTAAGACAGACGTGTATCAGGGGATC
ACGGTCGAGGAGATGGGCACCAAATGGCACGAAACAGTGGATGAGCTTGA
GCGGAGAGGAATCACCGTTACAAACGCCGAGAATGCTTTGGAGGGAGCTC
TCTCAGTCAGGGAGTTCGACGGATCCCTCGTTCACCACGAGAAATTCGTC
TTTCTGGACGTCGTTTGGCTGGCGAGAATCCTCAAGTCCTTGCTCAATCA
CAAGGACCAGGAGACCTTCGACGGCCGTGTGAAACTTAGGGACACGGGCG
ACTCACCTATCACACTCGACGATCCATCAGACATCACTTCGTGGGACAGG
CTCAAGAAGGAAGGCGTTCTTGAACTCAGGTTGGCGTATGCCATGTGGCC
GGATGGTCTGTCGGAGTATACTCTCCCCACTCTTGCATCCTTGGGTCTCA
TTTTCCCACTCGAAAATGATCCTGATGAAGGCCTGGTGGTTCTGTTGAGA
CTTAAGCCAAACCGCCCCGACAGCGTCGGTAAAGTGATGGATACCTTCTG
CTCGGGGCTCACCCCGGCATTCAGCGCCAGCTGGAAGATCTTTCTCGGTG
TACCGCCTGGAGCGGTTGAAAAGGTGTTGACACGGTGCTGCGGTCTTGGT
GGTGTGCGAACATTCTGGCAGTATGGGGTGCTTGTGCATGGCAGCCTCGG
CGTCCAAGATGGGCGCAGGACGTTTGCTGTGGTATAAGAATACTCATCCA
CCGACAATGAGCTTACCGCTAAGATTTTCGGTGATA back to topprotein sequence of EsuBft957_9a-0001 >EsuBft957_9 ID=EsuBft957_9|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=478bp
MVAYTGLLQMPLTPRSVCVLVCNAGEFGQRRDSEHCGGVEEDCRKLEELR
VCDWLRSISLRVPDNDVILVATKXELRICDWLRLISRRVPDNDVILVATK
CDLAGGNAREIGSRMEKSCRMWLSGWVRNGMQPVRLESHVCLTSCFPERV
DEHGDRSTGNHGSKGGWACGWRDEEDDQPPPSFLHRLVNKRDVSAEPRWF
FLAAGISPSLFWKLSSMDDPVEVVVRMSPDPDREDAAETAEGKTDVYQGI
TVEEMGTKWHETVDELERRGITVTNAENALEGALSVREFDGSLVHHEKFV
FLDVVWLARILKSLLNHKDQETFDGRVKLRDTGDSPITLDDPSDITSWDR
LKKEGVLELRLAYAMWPDGLSEYTLPTLASLGLIFPLENDPDEGLVVLLR
LKPNRPDSVGKVMDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLG
GVRTFWQYGVLVHGSLGVQDGRRTFAVV back to topmRNA from alignment at Scaffold_68:267641..270654+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3014bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)
ATGGTCCGCACTTATAAGTGTTTGCTTATGTGCGCCACATGGAATCTTAG
CCCCCCGCTCTAGTGTGGAGTATCTACAGCGCATTGCCTTCTCGACTCGG
AGGTGGCTCGTGCCTCGAATAGGTCAATGGGGGATTGTGTCGTCTACAGA
CTTGGGCGAGGTATAGAATAATCCGCAAGGATTAGAGGCCACGAGGTCGA
TTATGTTTGATGTTTAAATCACATTTCGCACGTTTAACAGGTCGCCTACA
CGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGTTTGCGTGCTCGTG
TGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCGAACATTGTGGTGG
GGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGCGTATGCGATTGGC
TGCGATCGATATCTCTACGGGTTCCCGACAACGACGTCATTCTCGTCGCA
ACCAAANTAGAATTGCGCATATGCGATTGGCTGCGATTGATATCTCGACG
GGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAGTGTGACCTGGCGG
GTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAAGTCCTGTCGAATG
TGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCGTTCGGTTGGAGTC
CCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTTGATGAGCATGGCG
ACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTGGGCATGCGGCTGG
CGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTCTTCACCGGCTCGT
CAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTCTTCCTCGCAGCTG
GGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCATGGACGGTGAGATT
GATCATTGTTTTATGTTTGGGCTCTACAACGAGTTTGGATGCATTGGTAG
GTCGACGCCGGGGGTAATCTGAACACGTACAGTTTTCCCCACTGGGATAG
GGTTGAACCCCCCTATGCATATGTAGGAGACTTCACCGAAGTCCACCTTG
AAACACCCACGAAAAACGATCAATATGTTGGGGTGGGCGGCATTCGAAAA
CACGCTTTACTTTGCTCACCACCGCGAAACAATCCTTTAAGCTCTTGATT
GTTGGAAACTTGTCGCACCACAGCACCGCAACTTGAAACTCATACAAGCA
CGACACGAACCAAAATTGTGTACACAGACATTGTATGCCGCTATTGAAAC
ACGGAAGAACCGGAATGCCATCTACGTCCTCTGTGTTTGGGTTCTGCACA
GGAGGCTGTCGCATGCCTAGAGCCTGCGGGGTGTAGCAGCCCGGTATCCT
CTCATTGTTGGTTATTACTGTTGGCGGTAGTGGTGGCGGTGGTGGCGGTG
GTGGTTGTTCTTCGCGCTAACTACCCGGTCTGGCCTCTACTCAGTGCATG
CTCTTTGGTGCTCGTCATGGTGACGAAACGTAGTCCCATGGTCCCACGCC
AATAATAAATAGCCGAAGAGACGCAGATATGTCCTCGTCACTCGCAGGAA
TCAATTATTCCGCAGAATATAGGTTGTTGAGGCTAAGTAAAACCGATCGT
TCCATCTCGGTTCCGTCTCGAAGGCTAAGTCAAGTAAGAACACGTTTGTA
TGTGACTACCAGGTAGAGCGGTGGGAACACCGGCAATCGCTGGCTATTCG
TCTCTCCGCTCAAACCCCGTCGGATTCGCTTTTCGGTTGTCCAACAATGT
GTTTTTCGCGAGTCGCCGCTCTGGTCACGTTATTTTTGCTTAGTTGCACC
AGTAGCCCACATCGTGCAGCTGCTCGGATGGCATCTTCGTACACTAGCAC
GCATCAAGCACCGGCGACTTGCACGGTCGGGATGAATGAACGCCACGTTG
ACCCTGGTTTTCTTTGGACGTTGGCTGCCTAGAGATCCCGTGGAGGTGGT
AGTGCGCATGTCTCCCGACCCCGACAGGGAGGACGCGGCGGAAACGGCAG
AGGGTAAGACAGACGTGTATCAGGGGATCACGGTCGAGGAGATGGGCACC
AAATGGCACGAAACAGTGGATGAGCTTGAGCGGAGAGGAATCACCGTTAC
AAACGCCGAGAATGCTTTGGAGGGAGCTCTCTCAGTCAGGTAAAATATAT
CCAAATCGGCAGTCCGACACGGAGCCACCGGTTTCGTCACGCGGTGGGGC
CTGCTGCCAACAGTAGGTACAATTTCGCCATCCGCTGTGCACCTGCTCGA
TGGCTTAGCAACCAAGATTTGTATTGGTCCCATTGCGGAAAAGAGGTGGC
GACGCCGCTTCCGTATCCGCTCCTCATGGTTTGTGAACTCACCCTGGGCG
GATTTCCCAACTCGACCGTTGGCTTGACAATAATGCAGGGAGTTCGACGG
ATCCCTCGTTCACCACGAGAAATTCGTCTTTCTGGACGTCGTTTGGCTGG
CGAGAATCCTCAAGTCCTTGCTCAATCACAAGGACCAGGAGACCTTCGAC
GGCCGTGTGAAACTTAGGGACACGGGCGACTCACCTATCACACTCGACGA
TCCATCAGACATCACTTCGTGGGACAGGCTCAAGAAGGAAGGCGTTCTTG
AACTCAGGTTGGCGTATGCCATGTGGCCGGATGGTCTGTCGGAGTATACT
CTCCCCACTCTTGCATCCTTGGGTCTCATTTTCCCACTCGAAAATGATCC
TGATGAAGGCCTGGTGGTTCTGTTGAGACTTAAGCCAAACCGCCCCGACA
GCGTCGGTAAAGTGATGGATACCTTCTGCTCGGGGCTCACCCCGGCATTC
AGCGCCAGCTGGAAGATCTTTCTCGGTGTACCGCCTGGAGCGGTTGAAAA
GGTGTTGACACGGTGCTGCGGTCTTGGTGGTGTGCGAACATTCTGGCAGT
ATGGGGTGCTTGTGCATGGCAGCCTCGGCGTCCAAGATGGGCGCAGGACG
TTTGCTGTGGTATAAGAATACTCATCCACCGACAATGAGCTTACCGCTAA
GATTTTCGGTGATA back to topCoding sequence (CDS) from alignment at Scaffold_68:267641..270654+ >EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1437bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCTACACGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGT
TTGCGTGCTCGTGTGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCG
AACATTGTGGTGGGGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGC
GTATGCGATTGGCTGCGATCGATATCTCTACGGGTTCCCGACAACGACGT
CATTCTCGTCGCAACCAAANTAGAATTGCGCATATGCGATTGGCTGCGAT
TGATATCTCGACGGGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAG
TGTGACCTGGCGGGTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAA
GTCCTGTCGAATGTGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCG
TTCGGTTGGAGTCCCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTT
GATGAGCATGGCGACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTG
GGCATGCGGCTGGCGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTC
TTCACCGGCTCGTCAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTC
TTCCTCGCAGCTGGGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCAT
GGACGATCCCGTGGAGGTGGTAGTGCGCATGTCTCCCGACCCCGACAGGG
AGGACGCGGCGGAAACGGCAGAGGGTAAGACAGACGTGTATCAGGGGATC
ACGGTCGAGGAGATGGGCACCAAATGGCACGAAACAGTGGATGAGCTTGA
GCGGAGAGGAATCACCGTTACAAACGCCGAGAATGCTTTGGAGGGAGCTC
TCTCAGTCAGGGAGTTCGACGGATCCCTCGTTCACCACGAGAAATTCGTC
TTTCTGGACGTCGTTTGGCTGGCGAGAATCCTCAAGTCCTTGCTCAATCA
CAAGGACCAGGAGACCTTCGACGGCCGTGTGAAACTTAGGGACACGGGCG
ACTCACCTATCACACTCGACGATCCATCAGACATCACTTCGTGGGACAGG
CTCAAGAAGGAAGGCGTTCTTGAACTCAGGTTGGCGTATGCCATGTGGCC
GGATGGTCTGTCGGAGTATACTCTCCCCACTCTTGCATCCTTGGGTCTCA
TTTTCCCACTCGAAAATGATCCTGATGAAGGCCTGGTGGTTCTGTTGAGA
CTTAAGCCAAACCGCCCCGACAGCGTCGGTAAAGTGATGGATACCTTCTG
CTCGGGGCTCACCCCGGCATTCAGCGCCAGCTGGAAGATCTTTCTCGGTG
TACCGCCTGGAGCGGTTGAAAAGGTGTTGACACGGTGCTGCGGTCTTGGT
GGTGTGCGAACATTCTGGCAGTATGGGGTGCTTGTGCATGGCAGCCTCGG
CGTCCAAGATGGGCGCAGGACGTTTGCTGTGGTATAA back to top
|