EsuBft957_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_9a-0001
Unique NameEsuBft957_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:267641..270654 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LF46
ProteomeIdEsuBft957_9
Protein domainsIPR027417
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length148
Evalue3.14e-231
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
Ec32 ortholog descriptionLRR-GTPase of the ROCO family, putative pseudogene
Ec32 orthologEc-01_001800.3
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
EC3.2.1.21
CAZyGH1
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_9aEsuBft957_9aEctocarpus subulatus male Bft15bgeneScaffold_68 267641..270654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_9a-0001EsuBft957_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 267641..270605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_9a-0001-exonagat-exon-32330Ectocarpus subulatus male Bft15bexonScaffold_68 267641..267643 +
EsuBft957_9a-0001-exonEsuBft957_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 267881..268532 +
EsuBft957_9a-0001-exonagat-exon-32329Ectocarpus subulatus male Bft15bexonScaffold_68 269575..269779 +
EsuBft957_9a-0001-exonagat-exon-32331Ectocarpus subulatus male Bft15bexonScaffold_68 270029..270654 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_9a-0001-cdsEsuBft957_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 267641..267643 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_9a-0001-exonagat-three_prime_utr-23488Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 270606..270654 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1486bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTACACGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGT
TTGCGTGCTCGTGTGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCG
AACATTGTGGTGGGGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGC
GTATGCGATTGGCTGCGATCGATATCTCTACGGGTTCCCGACAACGACGT
CATTCTCGTCGCAACCAAANTAGAATTGCGCATATGCGATTGGCTGCGAT
TGATATCTCGACGGGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAG
TGTGACCTGGCGGGTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAA
GTCCTGTCGAATGTGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCG
TTCGGTTGGAGTCCCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTT
GATGAGCATGGCGACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTG
GGCATGCGGCTGGCGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTC
TTCACCGGCTCGTCAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTC
TTCCTCGCAGCTGGGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCAT
GGACGATCCCGTGGAGGTGGTAGTGCGCATGTCTCCCGACCCCGACAGGG
AGGACGCGGCGGAAACGGCAGAGGGTAAGACAGACGTGTATCAGGGGATC
ACGGTCGAGGAGATGGGCACCAAATGGCACGAAACAGTGGATGAGCTTGA
GCGGAGAGGAATCACCGTTACAAACGCCGAGAATGCTTTGGAGGGAGCTC
TCTCAGTCAGGGAGTTCGACGGATCCCTCGTTCACCACGAGAAATTCGTC
TTTCTGGACGTCGTTTGGCTGGCGAGAATCCTCAAGTCCTTGCTCAATCA
CAAGGACCAGGAGACCTTCGACGGCCGTGTGAAACTTAGGGACACGGGCG
ACTCACCTATCACACTCGACGATCCATCAGACATCACTTCGTGGGACAGG
CTCAAGAAGGAAGGCGTTCTTGAACTCAGGTTGGCGTATGCCATGTGGCC
GGATGGTCTGTCGGAGTATACTCTCCCCACTCTTGCATCCTTGGGTCTCA
TTTTCCCACTCGAAAATGATCCTGATGAAGGCCTGGTGGTTCTGTTGAGA
CTTAAGCCAAACCGCCCCGACAGCGTCGGTAAAGTGATGGATACCTTCTG
CTCGGGGCTCACCCCGGCATTCAGCGCCAGCTGGAAGATCTTTCTCGGTG
TACCGCCTGGAGCGGTTGAAAAGGTGTTGACACGGTGCTGCGGTCTTGGT
GGTGTGCGAACATTCTGGCAGTATGGGGTGCTTGTGCATGGCAGCCTCGG
CGTCCAAGATGGGCGCAGGACGTTTGCTGTGGTATAAGAATACTCATCCA
CCGACAATGAGCTTACCGCTAAGATTTTCGGTGATA
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protein sequence of EsuBft957_9a-0001

>EsuBft957_9 ID=EsuBft957_9|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=478bp
MVAYTGLLQMPLTPRSVCVLVCNAGEFGQRRDSEHCGGVEEDCRKLEELR
VCDWLRSISLRVPDNDVILVATKXELRICDWLRLISRRVPDNDVILVATK
CDLAGGNAREIGSRMEKSCRMWLSGWVRNGMQPVRLESHVCLTSCFPERV
DEHGDRSTGNHGSKGGWACGWRDEEDDQPPPSFLHRLVNKRDVSAEPRWF
FLAAGISPSLFWKLSSMDDPVEVVVRMSPDPDREDAAETAEGKTDVYQGI
TVEEMGTKWHETVDELERRGITVTNAENALEGALSVREFDGSLVHHEKFV
FLDVVWLARILKSLLNHKDQETFDGRVKLRDTGDSPITLDDPSDITSWDR
LKKEGVLELRLAYAMWPDGLSEYTLPTLASLGLIFPLENDPDEGLVVLLR
LKPNRPDSVGKVMDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLG
GVRTFWQYGVLVHGSLGVQDGRRTFAVV
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mRNA from alignment at Scaffold_68:267641..270654+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3014bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)
ATGGTCCGCACTTATAAGTGTTTGCTTATGTGCGCCACATGGAATCTTAG
CCCCCCGCTCTAGTGTGGAGTATCTACAGCGCATTGCCTTCTCGACTCGG
AGGTGGCTCGTGCCTCGAATAGGTCAATGGGGGATTGTGTCGTCTACAGA
CTTGGGCGAGGTATAGAATAATCCGCAAGGATTAGAGGCCACGAGGTCGA
TTATGTTTGATGTTTAAATCACATTTCGCACGTTTAACAGGTCGCCTACA
CGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGTTTGCGTGCTCGTG
TGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCGAACATTGTGGTGG
GGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGCGTATGCGATTGGC
TGCGATCGATATCTCTACGGGTTCCCGACAACGACGTCATTCTCGTCGCA
ACCAAANTAGAATTGCGCATATGCGATTGGCTGCGATTGATATCTCGACG
GGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAGTGTGACCTGGCGG
GTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAAGTCCTGTCGAATG
TGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCGTTCGGTTGGAGTC
CCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTTGATGAGCATGGCG
ACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTGGGCATGCGGCTGG
CGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTCTTCACCGGCTCGT
CAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTCTTCCTCGCAGCTG
GGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCATGGACGGTGAGATT
GATCATTGTTTTATGTTTGGGCTCTACAACGAGTTTGGATGCATTGGTAG
GTCGACGCCGGGGGTAATCTGAACACGTACAGTTTTCCCCACTGGGATAG
GGTTGAACCCCCCTATGCATATGTAGGAGACTTCACCGAAGTCCACCTTG
AAACACCCACGAAAAACGATCAATATGTTGGGGTGGGCGGCATTCGAAAA
CACGCTTTACTTTGCTCACCACCGCGAAACAATCCTTTAAGCTCTTGATT
GTTGGAAACTTGTCGCACCACAGCACCGCAACTTGAAACTCATACAAGCA
CGACACGAACCAAAATTGTGTACACAGACATTGTATGCCGCTATTGAAAC
ACGGAAGAACCGGAATGCCATCTACGTCCTCTGTGTTTGGGTTCTGCACA
GGAGGCTGTCGCATGCCTAGAGCCTGCGGGGTGTAGCAGCCCGGTATCCT
CTCATTGTTGGTTATTACTGTTGGCGGTAGTGGTGGCGGTGGTGGCGGTG
GTGGTTGTTCTTCGCGCTAACTACCCGGTCTGGCCTCTACTCAGTGCATG
CTCTTTGGTGCTCGTCATGGTGACGAAACGTAGTCCCATGGTCCCACGCC
AATAATAAATAGCCGAAGAGACGCAGATATGTCCTCGTCACTCGCAGGAA
TCAATTATTCCGCAGAATATAGGTTGTTGAGGCTAAGTAAAACCGATCGT
TCCATCTCGGTTCCGTCTCGAAGGCTAAGTCAAGTAAGAACACGTTTGTA
TGTGACTACCAGGTAGAGCGGTGGGAACACCGGCAATCGCTGGCTATTCG
TCTCTCCGCTCAAACCCCGTCGGATTCGCTTTTCGGTTGTCCAACAATGT
GTTTTTCGCGAGTCGCCGCTCTGGTCACGTTATTTTTGCTTAGTTGCACC
AGTAGCCCACATCGTGCAGCTGCTCGGATGGCATCTTCGTACACTAGCAC
GCATCAAGCACCGGCGACTTGCACGGTCGGGATGAATGAACGCCACGTTG
ACCCTGGTTTTCTTTGGACGTTGGCTGCCTAGAGATCCCGTGGAGGTGGT
AGTGCGCATGTCTCCCGACCCCGACAGGGAGGACGCGGCGGAAACGGCAG
AGGGTAAGACAGACGTGTATCAGGGGATCACGGTCGAGGAGATGGGCACC
AAATGGCACGAAACAGTGGATGAGCTTGAGCGGAGAGGAATCACCGTTAC
AAACGCCGAGAATGCTTTGGAGGGAGCTCTCTCAGTCAGGTAAAATATAT
CCAAATCGGCAGTCCGACACGGAGCCACCGGTTTCGTCACGCGGTGGGGC
CTGCTGCCAACAGTAGGTACAATTTCGCCATCCGCTGTGCACCTGCTCGA
TGGCTTAGCAACCAAGATTTGTATTGGTCCCATTGCGGAAAAGAGGTGGC
GACGCCGCTTCCGTATCCGCTCCTCATGGTTTGTGAACTCACCCTGGGCG
GATTTCCCAACTCGACCGTTGGCTTGACAATAATGCAGGGAGTTCGACGG
ATCCCTCGTTCACCACGAGAAATTCGTCTTTCTGGACGTCGTTTGGCTGG
CGAGAATCCTCAAGTCCTTGCTCAATCACAAGGACCAGGAGACCTTCGAC
GGCCGTGTGAAACTTAGGGACACGGGCGACTCACCTATCACACTCGACGA
TCCATCAGACATCACTTCGTGGGACAGGCTCAAGAAGGAAGGCGTTCTTG
AACTCAGGTTGGCGTATGCCATGTGGCCGGATGGTCTGTCGGAGTATACT
CTCCCCACTCTTGCATCCTTGGGTCTCATTTTCCCACTCGAAAATGATCC
TGATGAAGGCCTGGTGGTTCTGTTGAGACTTAAGCCAAACCGCCCCGACA
GCGTCGGTAAAGTGATGGATACCTTCTGCTCGGGGCTCACCCCGGCATTC
AGCGCCAGCTGGAAGATCTTTCTCGGTGTACCGCCTGGAGCGGTTGAAAA
GGTGTTGACACGGTGCTGCGGTCTTGGTGGTGTGCGAACATTCTGGCAGT
ATGGGGTGCTTGTGCATGGCAGCCTCGGCGTCCAAGATGGGCGCAGGACG
TTTGCTGTGGTATAAGAATACTCATCCACCGACAATGAGCTTACCGCTAA
GATTTTCGGTGATA
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Coding sequence (CDS) from alignment at Scaffold_68:267641..270654+

>EsuBft957_9a-0001 ID=EsuBft957_9a-0001|Name=EsuBft957_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1437bp|location=Sequence derived from alignment at Scaffold_68:267641..270654+ (Ectocarpus subulatus male Bft15b)
ATGGTCGCCTACACGGGGCTGCTGCAGATGCCTCTAACGCCACGGTCGGT
TTGCGTGCTCGTGTGCAACGCGGGGGAGTTCGGACAGCGGCGAGATAGCG
AACATTGTGGTGGGGTTGAGGAAGACTGCCGCAAGCTGGAAGAATTGCGC
GTATGCGATTGGCTGCGATCGATATCTCTACGGGTTCCCGACAACGACGT
CATTCTCGTCGCAACCAAANTAGAATTGCGCATATGCGATTGGCTGCGAT
TGATATCTCGACGGGTTCCCGACAACGACGTCATTCTCGTCGCCACCAAG
TGTGACCTGGCGGGTGGGAACGCACGGGAAATTGGCAGCAGAATGGAGAA
GTCCTGTCGAATGTGGCTATCGGGCTGGGTTCGCAATGGTATGCAGCCCG
TTCGGTTGGAGTCCCACGTTTGCCTCACGAGCTGCTTCCCGGAAAGAGTT
GATGAGCATGGCGACAGAAGTACTGGGAACCATGGATCGAAGGGGGGTTG
GGCATGCGGCTGGCGAGACGAGGAAGACGATCAACCCCCGCCCAGTTTTC
TTCACCGGCTCGTCAACAAGCGTGACGTCTCCGCGGAACCCAGATGGTTC
TTCCTCGCAGCTGGGATATCGCCCTCACTGTTCTGGAAGCTCTCGAGCAT
GGACGATCCCGTGGAGGTGGTAGTGCGCATGTCTCCCGACCCCGACAGGG
AGGACGCGGCGGAAACGGCAGAGGGTAAGACAGACGTGTATCAGGGGATC
ACGGTCGAGGAGATGGGCACCAAATGGCACGAAACAGTGGATGAGCTTGA
GCGGAGAGGAATCACCGTTACAAACGCCGAGAATGCTTTGGAGGGAGCTC
TCTCAGTCAGGGAGTTCGACGGATCCCTCGTTCACCACGAGAAATTCGTC
TTTCTGGACGTCGTTTGGCTGGCGAGAATCCTCAAGTCCTTGCTCAATCA
CAAGGACCAGGAGACCTTCGACGGCCGTGTGAAACTTAGGGACACGGGCG
ACTCACCTATCACACTCGACGATCCATCAGACATCACTTCGTGGGACAGG
CTCAAGAAGGAAGGCGTTCTTGAACTCAGGTTGGCGTATGCCATGTGGCC
GGATGGTCTGTCGGAGTATACTCTCCCCACTCTTGCATCCTTGGGTCTCA
TTTTCCCACTCGAAAATGATCCTGATGAAGGCCTGGTGGTTCTGTTGAGA
CTTAAGCCAAACCGCCCCGACAGCGTCGGTAAAGTGATGGATACCTTCTG
CTCGGGGCTCACCCCGGCATTCAGCGCCAGCTGGAAGATCTTTCTCGGTG
TACCGCCTGGAGCGGTTGAAAAGGTGTTGACACGGTGCTGCGGTCTTGGT
GGTGTGCGAACATTCTGGCAGTATGGGGTGCTTGTGCATGGCAGCCTCGG
CGTCCAAGATGGGCGCAGGACGTTTGCTGTGGTATAA
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