EsuBft957_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_7a-0001
Unique NameEsuBft957_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:257894..259038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCS7
ProteomeIdEsuBft957_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Max annot lvl2759|Eukaryota
Length97
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.8e-16
EggNOG OGsCOG4886@1|root,2QQYD@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_7aEsuBft957_7aEctocarpus subulatus male Bft15bgeneScaffold_68 257894..259038 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_7a-0001-exonagat-exon-32324Ectocarpus subulatus male Bft15bexonScaffold_68 257894..258250 +
EsuBft957_7a-0001-exonEsuBft957_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 258419..259038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_7a-0001-cdsEsuBft957_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 257894..258058 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_7a-0001-exonagat-three_prime_utr-23486Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 258059..258250 +
EsuBft957_7a-0001-exonagat-three_prime_utr-23487Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 258419..259038 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_7a-0001EsuBft957_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 257894..258058 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_7a-0001 ID=EsuBft957_7a-0001|Name=EsuBft957_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=977bp|location=Sequence derived from alignment at Scaffold_68:257894..259038+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCCAACAAAGCAACCCTCACGGGCGACTGGAAGGAGGAGAGCAC
GGTGTTTGCCGACGTGGAACCCATGGAGCTACAAGGCTCATCCGTTCGGG
TGTACGACTGCGCTGGACAGGTGACAAGTGTTGCTCATGCCGAAGCGTTT
ATGATCGGTGCTTAAAGGAGGTGTTGCGTGACCGTCGCCCAGGATCGTTC
GCTGTCCGCCTTGGATGCGAGTGATGCTGTAGCGACTACGTGGAGGAAGG
ATTGCCAGAAAAAGCGAAATCCTGCACTCAATATCTCCAAACGCCTTTCA
GCTTGTCCTGCCCATTACGAGTTGTTTCACGCGACACCGAAAAAGTTCAA
GTACCTGGACCGTTTTAAACGGACCGACTTTTTTGTCAAAATTTTCGACA
TTTGTCTTTCAAAAACTTGTAACCTGTATGCAGTCATTTTAAACGTGTGA
CGTGGACTTGTGCAACTTGTGTCAAAAAAAATGACGCCGTCCGTGAGTTG
TAGCGCTCACTTCGAGACAACACACACGACACAACACAAACCGCGGAAAA
CACGACATCATGGACACCGACATGGATATCACGGACACCCAGCGTGGCCG
GCAGACCAAAACCCCGGCGAAATTCCAGCAGACGGGCTCTCTCGGTGCCG
CCGTAGGCGGTGGAGGCTTGCTCTCCAGCAAGATAGTGCTGCTGCCTGGC
ATCTCGGGGAACACTCATGTTACCACGGGAGGCGCTGCCGCCACCAACAC
TCAGAGCGAGGGTGGAGCAGGCCGCCGGCGAGGGGTGGCAACCACTGCTC
CTACCCCCCCGGGAAAAGGAAAAAACAAAGCGGCGGACGCGAAGCAACAA
CTGCAAGCCATCATGGCGGACCGCCGTTTTTCGGACGACACAGCAACAGC
AGACAGCATCGTCAACGTTGGCAACAGCGACGATAGCAATAGCGACAGCG
ACAGATGACTCACACACAACCCTAGCT
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protein sequence of EsuBft957_7a-0001

>EsuBft957_7 ID=EsuBft957_7|Name=EsuBft957_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MKANKATLTGDWKEESTVFADVEPMELQGSSVRVYDCAGQVTSVAHAEAF
MIGA
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mRNA from alignment at Scaffold_68:257894..259038+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_7a-0001 ID=EsuBft957_7a-0001|Name=EsuBft957_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1145bp|location=Sequence derived from alignment at Scaffold_68:257894..259038+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCAACAAAGCAACCCTCACGGGCGACTGGAAGGAGGAGAGCAC
GGTGTTTGCCGACGTGGAACCCATGGAGCTACAAGGCTCATCCGTTCGGG
TGTACGACTGCGCTGGACAGGTGACAAGTGTTGCTCATGCCGAAGCGTTT
ATGATCGGTGCTTAAAGGAGGTGTTGCGTGACCGTCGCCCAGGATCGTTC
GCTGTCCGCCTTGGATGCGAGTGATGCTGTAGCGACTACGTGGAGGAAGG
ATTGCCAGAAAAAGCGAAATCCTGCACTCAATATCTCCAAACGCCTTTCA
GCTTGTCCTGCCCATTACGAGTTGTTTCACGCGACACCGAAAAAGTTCAA
GTACCTGGTATATCATAGCATACACTACAGGGCTTGCTTCACCACAAGCC
TACGACATGCATCACCCGGGTGGAGGACAGCACGGGTGTAAACTGCTTGG
GGATCGCGTGGCTGTAATGAATTTTGAGCTCATCGAGGCACGGGCGCCGA
GTTTTGTCAAGGCGTTTGGCCTCAGGACCGTTTTAAACGGACCGACTTTT
TTGTCAAAATTTTCGACATTTGTCTTTCAAAAACTTGTAACCTGTATGCA
GTCATTTTAAACGTGTGACGTGGACTTGTGCAACTTGTGTCAAAAAAAAT
GACGCCGTCCGTGAGTTGTAGCGCTCACTTCGAGACAACACACACGACAC
AACACAAACCGCGGAAAACACGACATCATGGACACCGACATGGATATCAC
GGACACCCAGCGTGGCCGGCAGACCAAAACCCCGGCGAAATTCCAGCAGA
CGGGCTCTCTCGGTGCCGCCGTAGGCGGTGGAGGCTTGCTCTCCAGCAAG
ATAGTGCTGCTGCCTGGCATCTCGGGGAACACTCATGTTACCACGGGAGG
CGCTGCCGCCACCAACACTCAGAGCGAGGGTGGAGCAGGCCGCCGGCGAG
GGGTGGCAACCACTGCTCCTACCCCCCCGGGAAAAGGAAAAAACAAAGCG
GCGGACGCGAAGCAACAACTGCAAGCCATCATGGCGGACCGCCGTTTTTC
GGACGACACAGCAACAGCAGACAGCATCGTCAACGTTGGCAACAGCGACG
ATAGCAATAGCGACAGCGACAGATGACTCACACACAACCCTAGCT
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Coding sequence (CDS) from alignment at Scaffold_68:257894..259038+

>EsuBft957_7a-0001 ID=EsuBft957_7a-0001|Name=EsuBft957_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_68:257894..259038+ (Ectocarpus subulatus male Bft15b)
ATGAAGGCCAACAAAGCAACCCTCACGGGCGACTGGAAGGAGGAGAGCAC
GGTGTTTGCCGACGTGGAACCCATGGAGCTACAAGGCTCATCCGTTCGGG
TGTACGACTGCGCTGGACAGGTGACAAGTGTTGCTCATGCCGAAGCGTTT
ATGATCGGTGCTTAA
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