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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXH9 |
| ProteomeId | EsuBft957_4 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 105 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.29e-166 |
| EggNOG OGs | 2CMAG@1|root,2QPT0@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Preferred name | CEP120 |
| KEGG ko | ko:K16459 |
| GOs | GO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117 |
| Description | interkinetic nuclear migration |
| COG category | S |
| BRITE | ko00000,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1053bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GCTGCTGCTGCTGGTGGTGCTGCCGGTTCGGCGGCAGCAAGACTTCTAAC
AGCAGAGGATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACAC
CTCCCGCAGTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAG
ACAGCACGGGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACT
ACCGGAGGTGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAG
ACGGGGAACTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTG
GCTGCGGGGCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCA
AGCAGGTCAAGGCGTACACCCCTGTCTGCAAGGTACACGTGTACGCCACC
GACCCCAACTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCAT
CGTCGACATGCGAGACCTCGCCGGGCAGCGTCAGCAAGAACGCTGGGTCA
AGCTCCAGGGCGCCAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCC
ATGGCGCGCGACCCGCAGGAGGACTCCTGTAGAGAAGGACACGAGCAACG
AGGCCGACCGAACAGCGGCACGGGTGGTCACCGGGGGAATGATTCTGCGA
AACCCCCTGCTTCGAAAGCAAGCTTCGATGGTGGTTCTCCAACGGCCGCG
TCGGAACGAACGATGCCGTTTCCCGTCGCTGCCGCAGCACCAGCAGCAGG
GCTGGAAGACGGCGAGGTTGCCGTCCATACCGGGGTCGACAGCACTGTCT
CCGAATCCGAGGAGCCTTTGGCAGCCTCGACTGCTGTCGACGCGGTGTCC
GACCTCGACGCCCTACCGGTTGGGCCGGGCGCGGACGGGCAGGACGCCCA
GACGTTCTCGCCGGCCATCTCCATCAAGGGGGCCGCGGGACTGTCAGGTC
TGGCGGCTGCGGTGACCGGCAGCGATGGAGGTGGCCCCGGGTTCTGGCTG
AGCTGCTTTATGTTCCGCGTGGTGGTGCAATAGGGATAGGTTCGAGAGCT
TGG back to topprotein sequence of EsuBft957_4a-0001 >EsuBft957_4 ID=EsuBft957_4|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=324bp
MLQEITVVVRSLRHLPQSFFNEEKERELALRQHGQQQGHQHGRGSVDYRR
CLRAQANIANETRETGNSAWGRGVRSRQAMWLRGADKLSWSLPEQQFKQV
KAYTPVCKVHVYATDPNSPTMDTSDSVGWFIVDMRDLAGQRQQERWVKLQ
GASPAEVLISSRLAMARDPQEDSCREGHEQRGRPNSGTGGHRGNDSAKPP
ASKASFDGGSPTAASERTMPFPVAAAAPAAGLEDGEVAVHTGVDSTVSES
EEPLAASTAVDAVSDLDALPVGPGADGQDAQTFSPAISIKGAAGLSGLAA
AVTGSDGGGPGFWLSCFMFRVVVQ back to topmRNA from alignment at Scaffold_68:243139..244769- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1631bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)
GCTGCTGCTGCTGGTGGTGCTGCCGGTTCGGCGGCAGCAAGACTTCTAAC
AGCAGAGGATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACAC
CTCCCGCAGTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAG
ACAGCACGGGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACT
ACCGGAGGTGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAG
ACGGGGAACTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTG
GCTGCGGGGCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCA
AGCAGGTCAAGGCGTACACCCCTGTCTGCAAGGTGATGTGACTTATTTTG
ACTTGTTATTGCATGGTGAAGGAAGAACAGGATAGCAGCACAGTTAGTAG
TCCCTTGAATTCGTACAGTGGAGCAACGTTGTGCATCCTTGGAGCAACAG
CGACGACTTTGCTGTAGTCCGACCCTGGGATGTTCTTGCAGCAGTGATTT
CCCAGAGTTTTTCACAGCTAACCAGAGGGTGGAACAAACATTTGGTCAGT
GCTGCCGGGGGGAGCATCGTCGGTCGCAGCCCTCGCCGTAGCGCGAGTTT
GACATCCGCACAAATTCGCGCAAGGAATTAACGTGGATGTGTTTTTTTCA
CGGGCCCGCTTGGACACTGCTGCTGCTGTCCGTGTTGTACGCCACATAAC
AGCATCAGCGAAGTGAACGAAGCTCAAGGACAGAGAGAGGCCAAACAAAC
ACGGACCAATCCCTTTGGAACCCAACATCCCATGAGAGTTTCTTCTTCTG
CCACCGTTGGAAACGCCCTGCGTTCTTGTTCTTTCCGGCCGACAGCAACT
TCCCTCGCACCTCTCGTTTGTTTCGCTCCCAACATCCCCCCCAACCGCAA
CCGTTTCCAGGTACACGTGTACGCCACCGACCCCAACTCCCCCACAATGG
ACACCTCCGATTCGGTGGGCTGGTTCATCGTCGACATGCGAGACCTCGCC
GGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTCCAGGGCGCCAGCCCCGC
GGAGGTGCTGATATCCTCCCGCCTGGCCATGGCGCGCGACCCGCAGGAGG
ACTCCTGTAGAGAAGGACACGAGCAACGAGGCCGACCGAACAGCGGCACG
GGTGGTCACCGGGGGAATGATTCTGCGAAACCCCCTGCTTCGAAAGCAAG
CTTCGATGGTGGTTCTCCAACGGCCGCGTCGGAACGAACGATGCCGTTTC
CCGTCGCTGCCGCAGCACCAGCAGCAGGGCTGGAAGACGGCGAGGTTGCC
GTCCATACCGGGGTCGACAGCACTGTCTCCGAATCCGAGGAGCCTTTGGC
AGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGACGCCCTACCGGTTG
GGCCGGGCGCGGACGGGCAGGACGCCCAGACGTTCTCGCCGGCCATCTCC
ATCAAGGGGGCCGCGGGACTGTCAGGTCTGGCGGCTGCGGTGACCGGCAG
CGATGGAGGTGGCCCCGGGTTCTGGCTGAGCTGCTTTATGTTCCGCGTGG
TGGTGCAATAGGGATAGGTTCGAGAGCTTGG back to topCoding sequence (CDS) from alignment at Scaffold_68:243139..244769- >EsuBft957_4a-0001 ID=EsuBft957_4a-0001|Name=EsuBft957_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=975bp|location=Sequence derived from alignment at Scaffold_68:243139..244769- (Ectocarpus subulatus male Bft15b)
ATGCTCCAAGAGATCACCGTGGTAGTGCGGTCGCTGCGACACCTCCCGCA
GTCGTTTTTCAACGAGGAAAAGGAGAGGGAACTAGCGCTCAGACAGCACG
GGCAACAACAGGGGCATCAGCATGGACGGGGGAGCGTCGACTACCGGAGG
TGCTTGAGAGCGCAGGCAAACATCGCCAACGAGACGCGAGAGACGGGGAA
CTCGGCATGGGGCAGGGGCGTGAGGTCCCGCCAGGCGATGTGGCTGCGGG
GCGCGGACAAGCTGTCGTGGAGCCTGCCCGAGCAACAGTTCAAGCAGGTC
AAGGCGTACACCCCTGTCTGCAAGGTACACGTGTACGCCACCGACCCCAA
CTCCCCCACAATGGACACCTCCGATTCGGTGGGCTGGTTCATCGTCGACA
TGCGAGACCTCGCCGGGCAGCGTCAGCAAGAACGCTGGGTCAAGCTCCAG
GGCGCCAGCCCCGCGGAGGTGCTGATATCCTCCCGCCTGGCCATGGCGCG
CGACCCGCAGGAGGACTCCTGTAGAGAAGGACACGAGCAACGAGGCCGAC
CGAACAGCGGCACGGGTGGTCACCGGGGGAATGATTCTGCGAAACCCCCT
GCTTCGAAAGCAAGCTTCGATGGTGGTTCTCCAACGGCCGCGTCGGAACG
AACGATGCCGTTTCCCGTCGCTGCCGCAGCACCAGCAGCAGGGCTGGAAG
ACGGCGAGGTTGCCGTCCATACCGGGGTCGACAGCACTGTCTCCGAATCC
GAGGAGCCTTTGGCAGCCTCGACTGCTGTCGACGCGGTGTCCGACCTCGA
CGCCCTACCGGTTGGGCCGGGCGCGGACGGGCAGGACGCCCAGACGTTCT
CGCCGGCCATCTCCATCAAGGGGGCCGCGGGACTGTCAGGTCTGGCGGCT
GCGGTGACCGGCAGCGATGGAGGTGGCCCCGGGTTCTGGCTGAGCTGCTT
TATGTTCCGCGTGGTGGTGCAATAG back to top
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