Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005092035.1 |
| ProteomeId | EsuBft957_2 |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Protein domains | SSF56672 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | PTHR19446 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | line-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33208|Metazoa |
| Length | 1269 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.54e-41 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| Description | Ribonuclease H protein |
| COG category | S |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1269bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGTGCTGTTCAAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGG
GCATCTCGCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCT
ACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGA
GAGCGGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCC
AGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGT
TTCGTCGACCTCACCAAGGCATACGATTCGGTGGACCGAGACCTACTGTG
GGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTC
GCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAG
TACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCT
GGCCTCGCCACTGTTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCG
TGGCCGATGCCTGATGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCG
GGTGTGGGACGCGTCCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGG
TGTCCGAGGGATCTTTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCT
TTCAATCATTTTGTTTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTT
TTGTTTCTCCGCGGCGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCC
CATTTTTTGTGGACTATAGAGCTAATGTGAGAGACAACAACAACAACAAC
TCCGCACATATGCATACCAAATTGAAAATACGTTTGTAAACTGATGGAGA
TTGCATGTCCTAAAACTAACAGGGTGCGACACACAAAACGCCCGACTAAC
CAACAGCACCCAAAACTTTCGTCTGCACGTTCCCAACATAACATATATGA
GACACACAAGGCAGCTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGG
GGACATGTCCCTATATGCT back to topprotein sequence of EsuBft957_2a-0001 >EsuBft957_2 ID=EsuBft957_2|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=194bp
MANRKAVGPDDLPAELIKLFLDGDQVLFKKGDTMECGNYRGISLVAHAGK
VLLKVVATRLSHYCEREGILPEEESGFRPHRSTLDMLFAIQRLHELARKK
STAVFACFVDLTKAYDSVDRDLLWDVLRRFGVPPKMLAVIRHFHEGMRAR
VRTDDGQYSEWFDVGQGLRQGCNLASPLFNLFLAAMLMVAVADA back to topmRNA from alignment at Scaffold_68:226213..227767+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1555bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTGGCCCACGTGCGTGCCACTCGACGACATCCCATCTC
TACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCAACAGAAAGGCCGTC
GGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTTTTCCTGGACGGAGA
TCAAGGTCTCCTCCGCGAATTCCTCGCCACTGTCGTGGACGTGTGGCAGA
CTGGCGACGTACCATAACAGTGGAACGATGCCACCATCAAAGTGCTGTTC
AAGAAGGGGGACACGATGGAGTGCGGCAACTACCGGGGCATCTCGCTCGT
CGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCGCTACACGACTGAGCC
ACTACTGCGAGCGAGAGGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGC
CCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAGCGGCTCCATGA
GCTCGCGAGGAAGAAGAGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCA
CCAAGGCATACGATTCGGTGGACCGAGACCTACTGTGGGACGTGCTCCGA
CGCTTCGGCGTGCCCCCGAAGATGCTGGCGGTCATTCGCCACTTCCACGA
GGGCATGAGGGCGCGCGTCCGAACGGACGACGGGCAGTACTCGGAATGGT
TCGACGTGGGCCAAGGCCTCCGACAGGGATGCAACCTGGCCTCGCCACTG
TTCAACTTGTTCTTGGCCGCGATGCTCATGGTCGCCGTGGCCGAGTTCGA
CAAGGACCCCAAACCTTCGGCCTCTGTGCTGTGTTTCTGTGTTTCTTTTT
TTCATGACCTCCCTGCCTACTGTGATGTGTTGGGTACCGTGATCTCGCTT
TGCTGTTGCCTTTGTTTTTGTACGTCTGGCTGTATGCCCATCTGCCGCCT
CTTTGTCCGGTTTGCTCCGTTACTCCCATGCCCTGGTGCGTAGTGCCTGA
TGCTGGTGCGTTACCCTTTGATTTTTTCTTTCGGCGGGTGTGGGACGCGT
CCTCCTTTATTTTTGTGTTTGTTTTATTTTGATCGGTGTCCGAGGGATCT
TTTCTCGAACGGTCGGTGCGATACCTGTTATTTTCTTTCAATCATTTTGT
TTTCTTGTTCCGAGTGGTTCGTACCCTATTTTTGTTTTGTTTCTCCGCGG
CGTCGTATGTGCAAGGTTTTGAGACCACGGGCTTCCCATTTTTTGTGGAC
TATAGAGCTAATGTGAGAGACAACAACAACAACAACTCCGCACATATGCA
TACCAAATTGAAAATACGTTTGTAAACTGATGGAGATTGCATGTCCTAAA
ACTAACAGGGTGCGACACACAAAACGCCCGACTAACCAACAGCACCCAAA
ACTTTCGTCTGCACGTTCCCAACATAACATATATGAGACACACAAGGCAG
CTACCAAACTGATTTGTTGAGCCTGTTATCCGCAGGGGACATGTCCCTAT
ATGCT back to topCoding sequence (CDS) from alignment at Scaffold_68:226213..227767+ >EsuBft957_2a-0001 ID=EsuBft957_2a-0001|Name=EsuBft957_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=585bp|location=Sequence derived from alignment at Scaffold_68:226213..227767+ (Ectocarpus subulatus male Bft15b)
ATGGCCAACAGAAAGGCCGTCGGGCCGGACGACCTACCGGCTGAGCTGAT
CAAGCTTTTCCTGGACGGAGATCAAGTGCTGTTCAAGAAGGGGGACACGA
TGGAGTGCGGCAACTACCGGGGCATCTCGCTCGTCGCACACGCCGGCAAG
GTGCTGCTTAAGGTCGTCGCTACACGACTGAGCCACTACTGCGAGCGAGA
GGGCATCCTCCCGGAGGAGGAGAGCGGTTTCCGCCCACACCGGTCGACGC
TCGACATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAG
AGTACTGCGGTGTTCGCGTGTTTCGTCGACCTCACCAAGGCATACGATTC
GGTGGACCGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCC
CGAAGATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGC
GTCCGAACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGG
CCTCCGACAGGGATGCAACCTGGCCTCGCCACTGTTCAACTTGTTCTTGG
CCGCGATGCTCATGGTCGCCGTGGCCGATGCCTGA back to top
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