EsuBft957_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft957_12a-0001
Unique NameEsuBft957_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_68contigScaffold_68:285352..286655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LHJ2
ProteomeIdEsuBft957_12
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length78
Hectar predicted targeting categoryother localisation
Evalue6.56e-08
EggNOG OGsCOG5409@1|root,KOG1162@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Descriptionphosphate ion transport
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft957_12aEsuBft957_12aEctocarpus subulatus male Bft15bgeneScaffold_68 285352..286655 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_12a-0001-exonEsuBft957_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_68 285352..285777 -
EsuBft957_12a-0001-exonagat-exon-32340Ectocarpus subulatus male Bft15bexonScaffold_68 286299..286655 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_12a-0001-exonagat-three_prime_utr-23471Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_68 285352..285771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_12a-0001-cdsEsuBft957_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_68 285772..285777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft957_12a-0001EsuBft957_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_68 285772..286655 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft957_12a-0001 ID=EsuBft957_12a-0001|Name=EsuBft957_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=783bp|location=Sequence derived from alignment at Scaffold_68:285352..286655- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTGGAGTGGCGGCGGCGGCAGCTGCGGCGGCAACAACAGCAGCAC
CGGGGCCACGAGTCCGCGCAGGTCAGTCTCGAGCGCGATGGCGGGCACGA
CGTCATCTTCACAGCAGGGCGAGGACGGGAACGGGGGGCGCTTTGGTTGG
AGTCCGTCCTCCCCGACAACCCCTGCCCCTTCTCTGCAGCAGGGGAGCGG
TAGGGGTGGTGTTGGCAACGTGGACTACGGCATGGGCTTCATGGGTAACA
GCAGCGGCGACGAAAACTTGACCACCGAAGACCCGTACGTGCGGCCTTCC
CTCAACAGAGCCATCATCGAGCTGTCGGACACCTGCCACCGGCTGCTGTC
GTTCAAGGTGTAGGCGATGTGGGACTGCATCGCGCACGACGCTTTGGGTC
AGCATGTGTGGCACTACCCGGCCTTCAAGAAGTACCGCGGGCTTGGCAAC
CTCACCCTGCTCGTGTACATGTGGGAGGTCAACATTTGGGTGCCGAGAGA
GATACACCAAGAGACACACACGCAGGGAAAGAGAGAGGGGGACAGAGACA
GAAGGAGAGACAGCGATAGCCCCTGTGACAGAGGCAGAGAAGGGAAGTAG
ATACATTTCTTGTCACACTCCATTTTTTCGTGATGGTAGGACTTGGAACA
GGGCGAGGCAATCGTGTCTTTTGCGGTCCTGCTTGCACAATGTGTTCATG
CACTCCATGTCGCATCACGAGCCAATCTTAAGGGCGAAACACGTCGGGTT
AGACACCCTTTGCGATGTTTACGTGGTCTGCGT
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protein sequence of EsuBft957_12a-0001

>EsuBft957_12 ID=EsuBft957_12|Name=EsuBft957_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=120bp
MGWSGGGGSCGGNNSSTGATSPRRSVSSAMAGTTSSSQQGEDGNGGRFGW
SPSSPTTPAPSLQQGSGRGGVGNVDYGMGFMGNSSGDENLTTEDPYVRPS
LNRAIIELSDTCHRLLSFKV
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mRNA from alignment at Scaffold_68:285352..286655-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft957_12a-0001 ID=EsuBft957_12a-0001|Name=EsuBft957_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1304bp|location=Sequence derived from alignment at Scaffold_68:285352..286655- (Ectocarpus subulatus male Bft15b)
ATGGGCTGGAGTGGCGGCGGCGGCAGCTGCGGCGGCAACAACAGCAGCAC
CGGGGCCACGAGTCCGCGCAGGTCAGTCTCGAGCGCGATGGCGGGCACGA
CGTCATCTTCACAGCAGGGCGAGGACGGGAACGGGGGGCGCTTTGGTTGG
AGTCCGTCCTCCCCGACAACCCCTGCCCCTTCTCTGCAGCAGGGGAGCGG
TAGGGGTGGTGTTGGCAACGTGGACTACGGCATGGGCTTCATGGGTAACA
GCAGCGGCGACGAAAACTTGACCACCGAAGACCCGTACGTGCGGCCTTCC
CTCAACAGAGCCATCATCGAGCTGTCGGACACCTGCCACCGGCTGCTGTC
GTTCAAGGTGGGCGAAGCCAGGGTTGCTTGTTGCTGCTTGCTCCGGTTGC
TGCACAGTTGACGGCGCGTTGTACTTGTCGATGCGGTANAAGCCAGGGTT
GCTTGTTGCTGCTTGCTCCGGTTGCTGCACAGTTGACGGCACGTTGTACT
TGTCGAGGCGGTATAAGACTCCAAACCGTGAGAGACCCGCCTCAATTGCC
TGGGCGCTGGTTATTTTCCCCCCGCATTCGGGAGGGTAGTCCCTGTCCTA
CAGTACGTCCTCGAGTATATTCTGTGAGTGCGCAAATGAATGACTTTGTG
CTTTGAGGAGAATGCTGTCCCGCAGGCGAATAGACATCGATTTCCAGAGC
ACGTTTGCTGGGGAAGTAGTGCCCACCTCTTGTTTTGCTGGTGCCCTCAA
CTAGACGTCAACAATAAAGCGAGAACGAATTGCATGATAATTTGACGAAT
TTCATGATTTTTTTTGGTTTCATGCATGAACAAATAGATAAAACCATACA
CGGAAACGATGACAACGAACGATTGCAGGTGTAGGCGATGTGGGACTGCA
TCGCGCACGACGCTTTGGGTCAGCATGTGTGGCACTACCCGGCCTTCAAG
AAGTACCGCGGGCTTGGCAACCTCACCCTGCTCGTGTACATGTGGGAGGT
CAACATTTGGGTGCCGAGAGAGATACACCAAGAGACACACACGCAGGGAA
AGAGAGAGGGGGACAGAGACAGAAGGAGAGACAGCGATAGCCCCTGTGAC
AGAGGCAGAGAAGGGAAGTAGATACATTTCTTGTCACACTCCATTTTTTC
GTGATGGTAGGACTTGGAACAGGGCGAGGCAATCGTGTCTTTTGCGGTCC
TGCTTGCACAATGTGTTCATGCACTCCATGTCGCATCACGAGCCAATCTT
AAGGGCGAAACACGTCGGGTTAGACACCCTTTGCGATGTTTACGTGGTCT
GCGT
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Coding sequence (CDS) from alignment at Scaffold_68:285352..286655-

>EsuBft957_12a-0001 ID=EsuBft957_12a-0001|Name=EsuBft957_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=363bp|location=Sequence derived from alignment at Scaffold_68:285352..286655- (Ectocarpus subulatus male Bft15b)
ATGGGCTGGAGTGGCGGCGGCGGCAGCTGCGGCGGCAACAACAGCAGCAC
CGGGGCCACGAGTCCGCGCAGGTCAGTCTCGAGCGCGATGGCGGGCACGA
CGTCATCTTCACAGCAGGGCGAGGACGGGAACGGGGGGCGCTTTGGTTGG
AGTCCGTCCTCCCCGACAACCCCTGCCCCTTCTCTGCAGCAGGGGAGCGG
TAGGGGTGGTGTTGGCAACGTGGACTACGGCATGGGCTTCATGGGTAACA
GCAGCGGCGACGAAAACTTGACCACCGAAGACCCGTACGTGCGGCCTTCC
CTCAACAGAGCCATCATCGAGCTGTCGGACACCTGCCACCGGCTGCTGTC
GTTCAAGGTGTAG
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