|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LJS7 |
| ProteomeId | EsuBft957_10 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 7 |
| Max annot lvl | 2759|Eukaryota |
| Length | 168 |
| Evalue | 6.07e-154 |
| EggNOG OGs | 2CYK8@1|root,2S4YE@2759|Eukaryota |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
| KEGG rclass | RC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248 |
| KEGG ko | ko:K01188 |
| KEGG Reaction | R00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040 |
| KEGG Pathway | ko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110 |
| GOs | GO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772 |
| EC | 3.2.1.21 |
| CAZy | GH1 |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft957_10a-0001 ID=EsuBft957_10a-0001|Name=EsuBft957_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1685bp|location=Sequence derived from alignment at Scaffold_68:270656..276200+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CAGCACGCCAGCTGCGTGGGTGGCCCTGTCATACGTCATGTCGGCCGTGA
AACTGATGCTAGTGGATTTTTCCGGACTCCGCTGGAAAGGCTCGCTGAAG
TATCCTCAGCATCGTGACGCGATGCTCTTCGTCGATAAGGCGAGAAGCGG
TGGAGACAAACTTCTGGAAGGCAGTAGATGCCCACAATGCAGTGTAGACA
CCGGCGGGCTCGGGGCAGCGACCGTTGACCTCGTGCACATTGTCGACATC
CGACTGGACCGAGACGTGATTTTCAACGAGGTGAAGGCGAGATTCGACGA
CCTGGACAGTCAGTACTCCTTCCCTTGCCCGACGGATCCTTCCCAGGAGG
AGGGAGAGTTGATTCGAAAGATCGACGACGTGGCCACAGCTGTGAAGGGG
GGATTCGCAAAGGTGGAAGGGGGGATCAGCAACCTAAAGGGCGAGATGAA
GGGGGGGGTCGACGACACCAACGCCGAGTTGCGTGGCGTGAAGAAGGAAG
TGAAGGACGGGTTCAGCATGATATCGGGAAGGCTGGACAAGGTGCTAGGG
AGCACCCAGGAAAGCCTCATGCGCATCAGGAACTTGCAGGCCCCGAACTA
CCGTTTCCCTCGCCTTGTGGTCGTCAAGGAGGTTGGATCTGATGGCACTG
CATCGAAGGCTCATGGTAAGAAGAGCATGCTGAGCAAGGTGCGTCGCTGG
GGGAAGAAAGATATGACACTTCACTTCTTGTGCCCGGTCNTCCCTCGCCT
TGTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCATCGAAGGCTCATG
GTAAGAAGAGCATGCTGAGCAAGGCCCCGAACTACCGTTTCCCTCGCCTT
GTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCATCGAAGGCTCATGG
TAAGAAGAGCATGCTGAGCAAGGTGCGTCGCTGGGGGAAGAAAGATATGA
CACTTCACTTCTTGTGCCCGGTCGACATGACAAAGGTGCCGCGCGGCTAT
GGTGGTGAAGGCTATCGATTTCAGGAGAAGCGTAGTTGGGGGAAGAAAGT
ATCGCCTGTCCTTCAGGCGTGGGCTGAACGTGGATATCTCGGATTCCTGA
AGGACGTGACAGATGGGTTGGTCAATGAGCTTGTCGACCGGACTCTCGAC
GAGGAGACGCTGCTCCGTGCTATTTCGGGTGACGACATCGGCGCAGAGTT
GCAAAGGGATACGAGGACCTCGTATGAAGCGCTGAAGAAGTTCATGGACA
AGGAACAAGTTGACAGGGTCAAGAACGCCCGGGATGGTTATGGCTACATA
GACTTCAGGGACGAGATGAAGCGTGTCAACGACGGAAGGGGCGGGATGGT
GTGGGTTCGGAATGACAATGTTCAAAAGTGGTTGGACTCGCGTTCGATTG
CTGCTCCAACTCGCTAGACGTCGGTCTTGTTAGGTGCAGCGTATGGACTT
GAAACCACCCTAACCGCATTATGTCCCTTTGGCGGACGTTATTGTACCCA
AAGGGTCCAGACTACCATTGGGTATTACCATGAGGGGATAAGTCGACTTG
AGAGAAAGAGCGCATCTCGTTCTGTGGTTTGTCGTTTGTCGGTGCCTGTC
CGTCAAGTTCACCCGAAACACCGGGGCTTGGTAGAAGGGGTGGTTGTCCA
GTGTCCCGAGAATCCACGCATTCCGGTAGCTTATG back to topprotein sequence of EsuBft957_10a-0001 >EsuBft957_10 ID=EsuBft957_10|Name=EsuBft957_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=459bp
MSAVKLMLVDFSGLRWKGSLKYPQHRDAMLFVDKARSGGDKLLEGSRCPQ
CSVDTGGLGAATVDLVHIVDIRLDRDVIFNEVKARFDDLDSQYSFPCPTD
PSQEEGELIRKIDDVATAVKGGFAKVEGGISNLKGEMKGGVDDTNAELRG
VKKEVKDGFSMISGRLDKVLGSTQESLMRIRNLQAPNYRFPRLVVVKEVG
SDGTASKAHGKKSMLSKVRRWGKKDMTLHFLCPVXPRLVVVKEVGSDGTA
SKAHGKKSMLSKAPNYRFPRLVVVKEVGSDGTASKAHGKKSMLSKVRRWG
KKDMTLHFLCPVDMTKVPRGYGGEGYRFQEKRSWGKKVSPVLQAWAERGY
LGFLKDVTDGLVNELVDRTLDEETLLRAISGDDIGAELQRDTRTSYEALK
KFMDKEQVDRVKNARDGYGYIDFRDEMKRVNDGRGGMVWVRNDNVQKWLD
SRSIAAPTR back to topmRNA from alignment at Scaffold_68:270656..276200+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft957_10a-0001 ID=EsuBft957_10a-0001|Name=EsuBft957_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5545bp|location=Sequence derived from alignment at Scaffold_68:270656..276200+ (Ectocarpus subulatus male Bft15b)
CAGCACGCCAGCTGCGTGGGTGGCCCTGTCATACGTCATGTCGGCCGTGA
AACTGATGCTAGTGGATTTTTCCGGACTCCGCTGGAAAGGCTCGCTGAAG
TATCCTCAGCATCGTGACGCGATGCTCTTCGTCGATAAGGTAAGCCCTCA
ACACGCGTAAAGCCTGCAGGCCAATGGCTAGTGTGGGTACACTTCTGGTC
GCTCGACTCGTCAGGTTCTGGGTACAGTCGATCCTGTGTGCTGTTGTCTA
TTCGTGCATTCGACGTAGGTATGTTGTGTCCATTTCCCATCATGGTGCTC
TTTTCAATGCGGGCTTTGAATGCGTGTCTGGAGCATTATTTCTCTCTGTA
GCGCCGTTCACTCTGCGTAGGTTTATCTCTTATAGAACTGGGAGCACAGG
AAACTGCACCATATAGTGAAGCACACGTGGAGAGTTGATTAGTGTCATTT
CGCCAAGGTTATGTATTGTCAAGCTATAGTACTTTGCTGGTCGTCGGTGC
AGGTGGCACCTTCGCCAATCGAATGTCTTCAGAAACGCGGCGATGCATAA
GCAGCAGCACGTGGCTGCATGAATGTGACATCAATTTTCACTCCTGCTTT
TTTTTTCGATGGGTGTGTATGATGAGTGCGTCGCCAAATGCAGACGTTCT
TGACATTTGTTAGCCTTGAGTGCTTTTGCTGCTGCTGTGCCTCACGTCCG
GCGTTTCTCTTGGCATTCAGAGAGCCTTACGTGCAAGACGTGTAGGTGTT
TGAGGCGATCCTCGGATCAAGATGCGAGATCAATTAGTTACTATCCCGCC
ACCACATATACGGGAAACGTGTTGAATCCCACTTGTCAGGCGAGAAGCGG
TGGAGACAAACTTCTCGAGATCAATTTAAGCCATTATTCCACCACCACAT
ATACGGGAAACGTGTTGCATCCCACTTGTCAGGCGAGAAGCGGTGGAGAC
AAACTTCTCGAGATCAATTTAAGCCATTATTCCACCACCACATATACGGG
AAACGTGTTGCATCCCACTTGTCAGGCGAGAAGCGGTGGAGACAAACTTC
TGGAAGGCAGTAGATGCCCACAATGCAGTGTAGACACCGGCGGGCTCGGG
GCAGCGACCGTTGACCTCGTGCACATTGTCGACATCCGACTGGACCGAGG
TACGCACGACCAGTAGGGAGTTCGTACAAGTGCGAGTGAGCGCGGAAGTG
TCCGATTTGCTGTTGACCCCCCGTGCGATGGCTGCCACGTGTGCGATCGC
CGCCACACCAACGGCAATTGGATTCATGCATTCGATTCTGCTAGTCTCAC
GGACGCCCCTATGCAGTATTGTAGCTCCGATTGGTGCCATACTGACCAAG
ATCGCATCGGCTCCACGTCTCGCGGGTGTTCTTTCTACTGCGATATGATC
ACCCTCTGCGATAAGTCACACCGAGCGAACCGTTACTATTTGAATAGTAC
CTGTGTGCTGCTGCAACAGACATGCGAGCGTTCCCACATCGCAGTCGAGG
ACGTGCAATACGCTGAACCTTCTCACGTAGAACCCGTAAGGCGCGGTAGG
GTTGTTCTAAGTGGCGACTGGCATGACGGATTGAGATTTTGCTTGTGGCG
GTGTACGAAGAACGCAGAACGAAGAACGACCGGCTCTCGGCTGAGGTTTA
TCCATTTCCCTTTCAGCTTTATCTTCGCTGTTGGAAGGCTTTAGACCGCG
GTATTTTTACTGGATCACGGAAATGTTCAGTTTCTTTCGTGTTCTTTCGT
GAGTTCCCACAATACTTTCGTTTAGGGTTGAGGGTTAGGTAAAAGGAATG
TTGTCGTTCTGCGCGTGGTCTACCACGCTGTAACCCTTGCAACAGTGGAG
TCCAACAGCAAACTGTAAGAGCAATACATGAAGCAACTGATTGCAGGGCA
CGGAAATTACCTCACGATGTCTCGAACCTCACGGTCGATAGGCTTATTTA
TTATAGTGGTGTTCTGTTGAAGTCTTCGCAATCCTGTGCATCAACTTCGA
CCTCCGGTGCAACCGATATATTGTGGAAAAGAGGGTTTCGTCCTCGACAG
ACGTTGGGGAGTTAACTTTTATGAAGGTGTTCTCCACATTACCCCCCCCT
TTCGAGGCTTCTTCTTGTTTGCTAGGCAAGAGAAGTCTTCTTGGGGTAAC
CGGTACCCGACCGGCCGGCGGCGAGTAGAACCACCTTTTTTTCAACAATC
TTCTGTGCGTGTGTGCGGGTACACCACTTCCGCCACGCATTGCCAGAAGT
TTCGAGTTCGATAGACAGTGCATCGTTTCTTGGCCCACCCACCGTTTTTC
TTTTTCCGTACTCCGGAAGAAAATTAGGGTGAGCAGCGGGTTTTGAACCC
GTGTCTTTTGCAACCAAAAGCAGACACCTGACATCTCTTCGTCGACGCCA
TTGTGGAAAAGAGGGTTTCGTCCTCGACAAACGTTGGGGAGTTTCAACCT
TTATGAAGGTGTTCTCCACAATATGTACATTTTCATACCCTCGTTTTCCC
CTAATCCTGGTCGATCGTTTCAACCTGTGCTTTGATTCCTACGTTTTCGG
CAATGTTTGGGTATATGTAGGCTTTTGCCTAATTCAGCGTCAATTGATTG
TCATCGTTGATCCGTGAGTCCAGCCGTGGGTCCACTGATAGATTGTACTG
TTGGGGGCACGAGCTTGCAGTTCTGTTGCATTGTCTGCGCCCTGCCGGGG
TCATCGAGACTGACGTTCGTGCTCAAGACATTGTTGTACGTGACGCAATG
TAGGCAACACGGAGGAGTGATTCGATGGCTCCGGCCCGGTCAAGTTTCGA
CCGTTGCTGCTACCCCCCCCGGGCTACCCATGGGGGTAAATGCAATGGGA
GTATCTCGTCGTGAGCAAGAGAATAACTGTTCGTGGTGCTGGCCTACTTG
TTCCGCTCATTTTCGCATGGTAGACGTGATTTTCAACGAGGTGAAGGCGA
GATTCGACGACCTGGACAGTCAGTACTCCTTCCCTTGCCCGACGGTGAGA
ACGGATTGCACGCCTTTGGTTGTAAAGAAGTGCACAATCGACTGGTAGGA
ATGATTTTGCCGCATCATCATGTGTTCCGGTATGTTCCGATGGAGGAAAA
CCGACATCAGTTTTGGAGTTGTTCCTTGGACAAACTGTGCCTATGGTGGA
CTAAAGGGGACGAAACCGCTTGGATCGAGCTCTGGCCTGTTTCGGTGGTC
TTTCGGCGATTCGGTTTGTCTTCAGGTATTGACGTGATTTTTACGCTGCT
GCTCGTAACGTGGGGGGATTCATTCCTAGATCTCGGAGCATCGAGCGACA
AAATCACGTTCAGATATAGCTGACATCCTTTGAATGTTCTAAAATGTTGA
TTCCCCTCGAAGACCAACCATCTGTGACCCTCCTCTGGCATTGCCGGCCG
ATGACAGGTGCCGCAATCCGGCTTGTTCTGCGGCTTGTATCTTCATTTGT
TTGGTCTTGTGTGCATTAGACAGGAGATCGGAGGCACAATCTTGATGTTG
CCGTATTCCTTTGCTCCTCGCTTCAGCCTTGTCTGCGCAAGTGCACGACA
CCATCCCGTTCGAACGGGGATGGCCAGTAACGGGAGGAAGAATTCACTTC
AATGACGTCTGTAAATATGCCCTCGTTCGGAAAGGGTGCGCTGGAGGCAT
ATGCTGACATCGCCTATTCCACATTGCATCGGCCTGGCCGTCCTGCCCGG
CTCAATGTGTCTTCCCAACGTTCCAAACCAGAATTGCGGTCCTTCTTCGT
CGGGGCACACATTTGTTATTGCTCTATGGCTTTGCAGCTGAGTGTGGCCG
TCCTGTGCCTGTCATCGCTTCATGTTTTTACAAAGCAGGATCCTTCCCAG
GAGGAGGGAGAGTTGATTCGAAAGATCGACGACGTGGCCACAGCTGTGAA
GGGGGGATTCGCAAAGGTGGAAGGGGGGATCAGCAACCTAAAGGGCGAGA
TGAAGGGGGGGGTCGACGACACCAACGCCGAGTTGCGTGGCGTGAAGAAG
GAAGTGAAGGACGGGTTCAGCATGATATCGGGAAGGCTGGACAAGGTGCT
AGGGAGCACCCAGGAAAGCCTCATGCGCATCAGGAACTTGCAGGCCCCGA
ACTACCGTTTCCCTCGCCTTGTGGTCGTCAAGGAGGTTGGATCTGATGGC
ACTGCATCGAAGGCTCATGGTAAGAAGAGCATGCTGAGCAAGGTGCGTCG
CTGGGGGAAGAAAGATATGACACTTCACTTCTTGTGCCCGGTCNTCCCTC
GCCTTGTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCATCGAAGGCT
CATGGTAAGAAGAGCATGCTGAGCAAGGTNAGGGAGCACCCAGGAAAGCC
TCATGCGCATCAGGAACTTGCAGGCCCCGAACTACCGTTTCCCTCGCCTT
GTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCATCGAAGGCTCATGG
TAAGAAGAGCATGCTGAGCAAGGTGCGTCGCTGGGGGAAGAAAGATATGA
CACTTCACTTCTTGTGCCCGGTCGACATGACAAAGGTGCCGCGCGGCTAT
GGTGGTGAAGGCTATCGATTTCAGGAGAAGCGTAGTTGGGGGAAGAAAGT
ATCGCCTGTCCTTCAGGTACGACAAGGGTCGTAGCCGGTCGGAGTAGGTG
ACACTGTTGTTTCTGATGGGGTTCTACGGTGAGGTTCCACGCTTTATGAT
ACCCTCTTGTATTGGGGGAGGGTCGTCGCACTCCGAATGAGCACCTCTCC
CCTTGCAACACGGGTTTACATTTCCAAGGCGTGGTATATTGGGGCTCGGT
TGCTTGGGTCATGCCTTGACATGCGAGTGATACGAGCTATGTGGTGGATT
CTTTGCTGTGGTTTTGTTTGTGCGCCCTCTTCCTTGAGGTGGCCGTGGTG
ACCGCGAGGGTGGCGCTCAACGCATCGACAGGGCTGAACGTGGATATCTC
GGATTCCTGAAGGACGTGACAGATGGGTTGGTCAATGAGCTTGTCGACCG
GACTCTCGACGAGGAGACGCTGCTCCGTGCTATTTCGGGTGACGACATCG
GCGCAGAGTTGCAAAGGGATACGAGGACCTCGTATGAAGCGCTGAAGAAG
TTCATGGACAAGGAACAAGTTGACAGGGTCAAGAACGCCCGGGATGGTTA
TGGCTACATAGACTTCAGGGACGAGATGAAGCGTGTCAACGACGGAAGGG
GCGGGATGGTGTGGGTTCGGAATGACAATGTTCAAAAGTGGTTGGACTCG
CGTTCGATTGCTGCTCCAACTCGCTAGACGTCGGTCTTGTTAGGTGCAGC
GTATGGACTTGAAACCACCCTAACCGCATTATGTCCCTTTGGCGGACGTT
ATTGTACCCAAAGGGTCCAGACTACCATTGGGTATTACCATGAGGGGATA
AGTCGACTTGAGAGAAAGAGCGCATCTCGTTCTGTGGTTTGTCGTTTGTC
GGTGCCTGTCCGTCAAGTTCACCCGAAACACCGGGGCTTGGTAGAAGGGG
TGGTTGTCCAGTGTCCCGAGAATCCACGCATTCCGGTAGCTTATG back to topCoding sequence (CDS) from alignment at Scaffold_68:270656..276200+ >EsuBft957_10a-0001 ID=EsuBft957_10a-0001|Name=EsuBft957_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1380bp|location=Sequence derived from alignment at Scaffold_68:270656..276200+ (Ectocarpus subulatus male Bft15b)
ATGTCGGCCGTGAAACTGATGCTAGTGGATTTTTCCGGACTCCGCTGGAA
AGGCTCGCTGAAGTATCCTCAGCATCGTGACGCGATGCTCTTCGTCGATA
AGGCGAGAAGCGGTGGAGACAAACTTCTGGAAGGCAGTAGATGCCCACAA
TGCAGTGTAGACACCGGCGGGCTCGGGGCAGCGACCGTTGACCTCGTGCA
CATTGTCGACATCCGACTGGACCGAGACGTGATTTTCAACGAGGTGAAGG
CGAGATTCGACGACCTGGACAGTCAGTACTCCTTCCCTTGCCCGACGGAT
CCTTCCCAGGAGGAGGGAGAGTTGATTCGAAAGATCGACGACGTGGCCAC
AGCTGTGAAGGGGGGATTCGCAAAGGTGGAAGGGGGGATCAGCAACCTAA
AGGGCGAGATGAAGGGGGGGGTCGACGACACCAACGCCGAGTTGCGTGGC
GTGAAGAAGGAAGTGAAGGACGGGTTCAGCATGATATCGGGAAGGCTGGA
CAAGGTGCTAGGGAGCACCCAGGAAAGCCTCATGCGCATCAGGAACTTGC
AGGCCCCGAACTACCGTTTCCCTCGCCTTGTGGTCGTCAAGGAGGTTGGA
TCTGATGGCACTGCATCGAAGGCTCATGGTAAGAAGAGCATGCTGAGCAA
GGTGCGTCGCTGGGGGAAGAAAGATATGACACTTCACTTCTTGTGCCCGG
TCNTCCCTCGCCTTGTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCA
TCGAAGGCTCATGGTAAGAAGAGCATGCTGAGCAAGGCCCCGAACTACCG
TTTCCCTCGCCTTGTGGTCGTCAAGGAGGTTGGATCTGATGGCACTGCAT
CGAAGGCTCATGGTAAGAAGAGCATGCTGAGCAAGGTGCGTCGCTGGGGG
AAGAAAGATATGACACTTCACTTCTTGTGCCCGGTCGACATGACAAAGGT
GCCGCGCGGCTATGGTGGTGAAGGCTATCGATTTCAGGAGAAGCGTAGTT
GGGGGAAGAAAGTATCGCCTGTCCTTCAGGCGTGGGCTGAACGTGGATAT
CTCGGATTCCTGAAGGACGTGACAGATGGGTTGGTCAATGAGCTTGTCGA
CCGGACTCTCGACGAGGAGACGCTGCTCCGTGCTATTTCGGGTGACGACA
TCGGCGCAGAGTTGCAAAGGGATACGAGGACCTCGTATGAAGCGCTGAAG
AAGTTCATGGACAAGGAACAAGTTGACAGGGTCAAGAACGCCCGGGATGG
TTATGGCTACATAGACTTCAGGGACGAGATGAAGCGTGTCAACGACGGAA
GGGGCGGGATGGTGTGGGTTCGGAATGACAATGTTCAAAAGTGGTTGGAC
TCGCGTTCGATTGCTGCTCCAACTCGCTAG back to top
|