EsuBft956_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft956_3a-0001
Unique NameEsuBft956_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_330contigScaffold_330:890017..892693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FYX1
ProteomeIdEsuBft956_3
Protein domainsIPR022035
Protein domainsPTHR21727
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length174
Hectar predicted targeting categoryother localisation
Evalue3.4e-86
EggNOG OGs28P6D@1|root,2QVT7@2759|Eukaryota
Ec32 ortholog descriptionPhosphorylated CTD interacting factor 1, WW domain
Ec32 orthologEc-19_002790.1
Date last modified2016-06-15
Date creation2016-06-15
Preferred namePCIF1
KEGG koko:K17584
GOsGO:0003002,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0007275,GO:0007389,GO:0007444,GO:0007447,GO:0007450,GO:0008150,GO:0009888,GO:0009892,GO:0009953,GO:0010563,GO:0010921,GO:0010923,GO:0015630,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035220,GO:0035222,GO:0035295,GO:0035303,GO:0035305,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044092,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045171,GO:0045936,GO:0048190,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0060429,GO:0065007,GO:0065009,GO:0070013
Descriptionnegative regulation of phosphatase activity
COG categoryA
BRITEko00000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft956_3aEsuBft956_3aEctocarpus subulatus male Bft15bgeneScaffold_330 890017..892693 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_3a-0001-exonEsuBft956_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_330 890017..890032 +
EsuBft956_3a-0001-exonagat-exon-33240Ectocarpus subulatus male Bft15bexonScaffold_330 890273..890383 +
EsuBft956_3a-0001-exonagat-exon-33239Ectocarpus subulatus male Bft15bexonScaffold_330 891079..892693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_3a-0001-cdsEsuBft956_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_330 890017..890032 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_3a-0001-exonagat-three_prime_utr-23463Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_330 892119..892693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_3a-0001EsuBft956_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_330 890017..892118 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft956_3a-0001 ID=EsuBft956_3a-0001|Name=EsuBft956_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1742bp|location=Sequence derived from alignment at Scaffold_330:890017..892693+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACTCCCTGGGCGAAGGCGTTAACCTTTGTGGTCATCATCCCTTG
CTGGGAAGATTCCGCGGGGTGGAAGAGGCTACGGGACAGCGCGTTTCTGT
CCAAGCACATCAAGCTCCACCAGAAAGACCACGGTTACTGCGAGGGCAAG
CAGCATCTGCGGCGCAACCGCTACCGGTTGGCGTCGTTTCACACGAGCGT
CTTCTTCCTGCAGACCGAGCCGGCGAGGCGGCAGCAGTCGCCGGAGACAC
TGGGGCAGGCTTGCCGAGAGCTCGAGCGGGCCTTCGCTCTAAGGCAAGAA
GACGCCAGCGGCGGCGGCGCTGCGAGGCACGCCGGCGGCACCGGAGGGGA
GGGCGGAAAAAGCGGCCCCTCTTCCTCTTCGGGGCAGGTACTGCGAGAAC
AAGGAGGCGGGGGAGAAGGGTTGATCGATGACGGAGGGATCGGTGTGAGT
GGTACTAGCGATGACGATGACGATGATGATGATGATGACGATGACGGCAG
AGACTTCACCGAAACGTCTTCTTCAACGAGCAAGGTCACGGCGAAGCGGC
AGCTCGACGAGGCGGGGAAGGCGACGGAAGGAAAAGCACGGGGGGTTGTG
AATGCCGGCAACAAGAACCCTGCTTCTGTCGGTAGTGGTGTTGGTGATTT
TGGTGCCGCTACCCCTCTACCAAAGGCAGAGAACAATAAAAAACGAGCGA
AAGGTAAACGGCGGCGGAACAGCGGCGACGAGGCCGGACGATCGGCACCA
TCCGCGGGCGGCAGAGAACCGGGTGAACATAGCAGGCCGTTGTTGGACGA
GGACGGAAGTGCGGCTGCCGGGTGTAGGGGCGGCGCAGCAGGAGGGGGGA
GCATCGGCCTTGCGGAGGATTTGGGCCCTGATCGTCAAGCCAAGAGAGAG
TTGCCGTCATCGGTCAAAAAGAAGAAGAAGCGAAAGGTTACTGTGTCAGC
GGTGGCGGTGGCGAGGGGAACAGCGAGCGATGCCGAGGGGGACGGCAGCG
GGGCCGATCCGGCGGTGGCGCAGGCCGGCGAAGGTACCAGGCTCCTCAGC
GAAAACGGGACGCAGAAGGGCGAAGCGGAAGGAACGGCGGCAGCAACGGG
AGTAGAGCGCGCGAGGAAAAAGAAGAGAGGCAAACAGAAAAAGAAGAAGT
CCCTCTTTGCGTTGTAGATGTACTGGGGGCATCCGCCCCGCTCCACGCTC
GGCGAAGAGGGGCGACGCGCCATGAATAATTGGGCACCCTTTTTTTCTCA
GTGGGAAAACTGATGGAGAAACTTGATCAGAGCGAGATGAAGGTATTTAG
TGTGGGACACGGCAGGTGGACGATCATGTGGTAGGCTTTTTTGTCTCCGG
GTGGGCTGCTTGTTATTCCAGAGAACCCGTCGTTCTTATCATTAATACTG
CTGTGCTTCGTTTCTTGAGTGTTTGTGTTGGTGCGTCGCGTCCTGCTCTA
TTGTGTGTTGTCTGCAGTTCGTCGTATTTTCTTCCTGGACACTTTGTATG
CCGTCCTTCGCGAAAACTACTCGAGTGTATGCCGGCCCGATACCTGCGTC
GGGCAGTCAGTGCCGTCGGCCAAATACTGCACCACGGAAAGATGCAGTAT
GTCGCAACAACGAGCGACAGCTGGTAGATGTAACTGCCGCCAGCCGTGTG
CGTCCACGGGAGGAGTGCGTGTGATGTTGTTGCTCGCTGCGCCAGCTGTG
CGTGTGTCGCTGTGCCCGTTGAGCGTTTGTTCTGAACCTGCA
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protein sequence of EsuBft956_3a-0001

>EsuBft956_3 ID=EsuBft956_3|Name=EsuBft956_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=388bp
MCTPWAKALTFVVIIPCWEDSAGWKRLRDSAFLSKHIKLHQKDHGYCEGK
QHLRRNRYRLASFHTSVFFLQTEPARRQQSPETLGQACRELERAFALRQE
DASGGGAARHAGGTGGEGGKSGPSSSSGQVLREQGGGGEGLIDDGGIGVS
GTSDDDDDDDDDDDDGRDFTETSSSTSKVTAKRQLDEAGKATEGKARGVV
NAGNKNPASVGSGVGDFGAATPLPKAENNKKRAKGKRRRNSGDEAGRSAP
SAGGREPGEHSRPLLDEDGSAAAGCRGGAAGGGSIGLAEDLGPDRQAKRE
LPSSVKKKKKRKVTVSAVAVARGTASDAEGDGSGADPAVAQAGEGTRLLS
ENGTQKGEAEGTAAATGVERARKKKRGKQKKKKSLFAL
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mRNA from alignment at Scaffold_330:890017..892693+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft956_3a-0001 ID=EsuBft956_3a-0001|Name=EsuBft956_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2677bp|location=Sequence derived from alignment at Scaffold_330:890017..892693+ (Ectocarpus subulatus male Bft15b)
ATGTGCACTCCCTGGGGTACTTGAACAAGCGAGACATGTCCTGACATGTG
TGTAGTCAAATGTAAGAGCTCGGGCACATTAGCGGCCACCCGAGGCCGGA
AGACTGCTTCGCGGCGCGCCCGTTCACCCCCCGCCCCCCCCTCCCTCTCT
CTCCTGCGCGTTTCGTCTCCCCTTCCGTCACCCAATCTGGTTGCAAACAC
CCATCTCTCTGTGTGCGTGTTGCTCTCACTGGTGCACGCCCCCCGGAAGG
CTACAGCGAAGGCGTTAACCTTTGTGGTCATCATCCCTTGCTGGGAAGAT
TCCGCGGGGTGGAAGAGGCTACGGGACAGCGCGTTTCTGTCCAAGCACAT
CAAGCTCCACCAGAAAGGTGAAAAGAATATGACGGGGGTCGTTTTCGTCG
TTTTCCTCGGTGGTGTTGCCCGTTCACAGGGGGGAGGTTGTGTCTCTCGG
AAAGGGAAAGGTTTCCTCTGTTACATGGTATGTAGCGCGAAGCACGAAGG
TGGATATATTGTTCCACGCGGAACGAGTGCTCGCACGACCGAGTGACCTG
GAACCTGTGACATTCCCGCTTTTCTTGAGACGGAGAGGGGAGAGGGATGG
CGGTAGACTGGTAGTAACCTTCACCGGGGATCGCCACCGAAACCCCGTTA
GAGTAACGCCTTCATGGAGGTGCAAGGAATCAATCCTGGCATGTCCGTGA
GTGCTTTGGTTTAGTGGCATCCCCTGGCGAGGTGGGGGTTTGACTGAGAC
CTCTAGCTCACTGGATTGATTCGTTCGTAAATTATGCTGAATGGCAGGCG
ATGTGTGGCCTCGCTTGCTGCGTGCGAAACGGCGGATAGCACAAGCTAGC
TGAATCGTTGCACAAGAATTGTTTTGATGTTTTGTTCGTCCCACTCCGCG
CTCTCATCTTGTTATATTCCATAGCCTGGTTAGTAGCCGCCGCCTAGATT
TCGACACCAAGCCGATGTTAGAATCAACATTGTAAACACGAAAACACGGC
TCGCGCGTGCGTGAGTGCGTGCGTCGCCTCCCCTTCGCCTCTCTTTTCCG
GTCCCGGCGCAGACCACGGTTACTGCGAGGGCAAGCAGCATCTGCGGCGC
AACCGCTACCGGTTGGCGTCGTTTCACACGAGCGTCTTCTTCCTGCAGAC
CGAGCCGGCGAGGCGGCAGCAGTCGCCGGAGACACTGGGGCAGGCTTGCC
GAGAGCTCGAGCGGGCCTTCGCTCTAAGGCAAGAAGACGCCAGCGGCGGC
GGCGCTGCGAGGCACGCCGGCGGCACCGGAGGGGAGGGCGGAAAAAGCGG
CCCCTCTTCCTCTTCGGGGCAGGTACTGCGAGAACAAGGAGGCGGGGGAG
AAGGGTTGATCGATGACGGAGGGATCGGTGTGAGTGGTACTAGCGATGAC
GATGACGATGATGATGATGATGACGATGACGGCAGAGACTTCACCGAAAC
GTCTTCTTCAACGAGCAAGGTCACGGCGAAGCGGCAGCTCGACGAGGCGG
GGAAGGCGACGGAAGGAAAAGCACGGGGGGTTGTGAATGCCGGCAACAAG
AACCCTGCTTCTGTCGGTAGTGGTGTTGGTGATTTTGGTGCCGCTACCCC
TCTACCAAAGGCAGAGAACAATAAAAAACGAGCGAAAGGTAAACGGCGGC
GGAACAGCGGCGACGAGGCCGGACGATCGGCACCATCCGCGGGCGGCAGA
GAACCGGGTGAACATAGCAGGCCGTTGTTGGACGAGGACGGAAGTGCGGC
TGCCGGGTGTAGGGGCGGCGCAGCAGGAGGGGGGAGCATCGGCCTTGCGG
AGGATTTGGGCCCTGATCGTCAAGCCAAGAGAGAGTTGCCGTCATCGGTC
AAAAAGAAGAAGAAGCGAAAGGTTACTGTGTCAGCGGTGGCGGTGGCGAG
GGGAACAGCGAGCGATGCCGAGGGGGACGGCAGCGGGGCCGATCCGGCGG
TGGCGCAGGCCGGCGAAGGTACCAGGCTCCTCAGCGAAAACGGGACGCAG
AAGGGCGAAGCGGAAGGAACGGCGGCAGCAACGGGAGTAGAGCGCGCGAG
GAAAAAGAAGAGAGGCAAACAGAAAAAGAAGAAGTCCCTCTTTGCGTTGT
AGATGTACTGGGGGCATCCGCCCCGCTCCACGCTCGGCGAAGAGGGGCGA
CGCGCCATGAATAATTGGGCACCCTTTTTTTCTCAGTGGGAAAACTGATG
GAGAAACTTGATCAGAGCGAGATGAAGGTATTTAGTGTGGGACACGGCAG
GTGGACGATCATGTGGTAGGCTTTTTTGTCTCCGGGTGGGCTGCTTGTTA
TTCCAGAGAACCCGTCGTTCTTATCATTAATACTGCTGTGCTTCGTTTCT
TGAGTGTTTGTGTTGGTGCGTCGCGTCCTGCTCTATTGTGTGTTGTCTGC
AGTTCGTCGTATTTTCTTCCTGGACACTTTGTATGCCGTCCTTCGCGAAA
ACTACTCGAGTGTATGCCGGCCCGATACCTGCGTCGGGCAGTCAGTGCCG
TCGGCCAAATACTGCACCACGGAAAGATGCAGTATGTCGCAACAACGAGC
GACAGCTGGTAGATGTAACTGCCGCCAGCCGTGTGCGTCCACGGGAGGAG
TGCGTGTGATGTTGTTGCTCGCTGCGCCAGCTGTGCGTGTGTCGCTGTGC
CCGTTGAGCGTTTGTTCTGAACCTGCA
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Coding sequence (CDS) from alignment at Scaffold_330:890017..892693+

>EsuBft956_3a-0001 ID=EsuBft956_3a-0001|Name=EsuBft956_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1167bp|location=Sequence derived from alignment at Scaffold_330:890017..892693+ (Ectocarpus subulatus male Bft15b)
ATGTGCACTCCCTGGGCGAAGGCGTTAACCTTTGTGGTCATCATCCCTTG
CTGGGAAGATTCCGCGGGGTGGAAGAGGCTACGGGACAGCGCGTTTCTGT
CCAAGCACATCAAGCTCCACCAGAAAGACCACGGTTACTGCGAGGGCAAG
CAGCATCTGCGGCGCAACCGCTACCGGTTGGCGTCGTTTCACACGAGCGT
CTTCTTCCTGCAGACCGAGCCGGCGAGGCGGCAGCAGTCGCCGGAGACAC
TGGGGCAGGCTTGCCGAGAGCTCGAGCGGGCCTTCGCTCTAAGGCAAGAA
GACGCCAGCGGCGGCGGCGCTGCGAGGCACGCCGGCGGCACCGGAGGGGA
GGGCGGAAAAAGCGGCCCCTCTTCCTCTTCGGGGCAGGTACTGCGAGAAC
AAGGAGGCGGGGGAGAAGGGTTGATCGATGACGGAGGGATCGGTGTGAGT
GGTACTAGCGATGACGATGACGATGATGATGATGATGACGATGACGGCAG
AGACTTCACCGAAACGTCTTCTTCAACGAGCAAGGTCACGGCGAAGCGGC
AGCTCGACGAGGCGGGGAAGGCGACGGAAGGAAAAGCACGGGGGGTTGTG
AATGCCGGCAACAAGAACCCTGCTTCTGTCGGTAGTGGTGTTGGTGATTT
TGGTGCCGCTACCCCTCTACCAAAGGCAGAGAACAATAAAAAACGAGCGA
AAGGTAAACGGCGGCGGAACAGCGGCGACGAGGCCGGACGATCGGCACCA
TCCGCGGGCGGCAGAGAACCGGGTGAACATAGCAGGCCGTTGTTGGACGA
GGACGGAAGTGCGGCTGCCGGGTGTAGGGGCGGCGCAGCAGGAGGGGGGA
GCATCGGCCTTGCGGAGGATTTGGGCCCTGATCGTCAAGCCAAGAGAGAG
TTGCCGTCATCGGTCAAAAAGAAGAAGAAGCGAAAGGTTACTGTGTCAGC
GGTGGCGGTGGCGAGGGGAACAGCGAGCGATGCCGAGGGGGACGGCAGCG
GGGCCGATCCGGCGGTGGCGCAGGCCGGCGAAGGTACCAGGCTCCTCAGC
GAAAACGGGACGCAGAAGGGCGAAGCGGAAGGAACGGCGGCAGCAACGGG
AGTAGAGCGCGCGAGGAAAAAGAAGAGAGGCAAACAGAAAAAGAAGAAGT
CCCTCTTTGCGTTGTAG
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