EsuBft956_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft956_2a-0001
Unique NameEsuBft956_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_330contigScaffold_330:893361..898137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft956_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length166
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002800.1
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2aEsuBft956_2aEctocarpus subulatus male Bft15bgeneScaffold_330 893361..898137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2a-0001EsuBft956_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_330 894302..898075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2a-0001-exonagat-exon-33238Ectocarpus subulatus male Bft15bexonScaffold_330 893361..894466 -
EsuBft956_2a-0001-exonEsuBft956_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_330 896558..896959 -
EsuBft956_2a-0001-exonagat-exon-33237Ectocarpus subulatus male Bft15bexonScaffold_330 897980..898137 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2a-0001-exonagat-three_prime_utr-23462Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_330 893361..894301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2a-0001-cdsEsuBft956_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_330 894302..894466 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft956_2a-0001-exonagat-five_prime_utr-15273Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_330 898076..898137 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft956_2a-0001 ID=EsuBft956_2a-0001|Name=EsuBft956_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1666bp|location=Sequence derived from alignment at Scaffold_330:893361..898137- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CAATACACTGCACAACTTGTACACAGCACAGCCGCGGGAGCGGGCGGCAG
TGGTTTGATATCATGACGGCAGAAGAAGAGTTAGACAAGTACAAGCGCCT
GTACGAGGAACAAAAGGCAAAGGTGAAGGACTTGGAGCGCCAGAACCTCC
AGCTGAAGGACACCGTCCAGCACCTCATGGAGGTGGGCCGGCAGCAGGGA
TCAGCAGCCGCCGCCACCATCGCCACCACCGGCACCAACAGAGGCCCCCC
GCCTCCCGGACCCGCGGGCAACAACTCCCGCAACACCGCCCGCGCGAGGC
CCGCACCCGCCGCCTCCAACAATCGAAACCCCGCGGCGCCGCCGCAGGCG
GGCGGGCGAGGAGGTGGGCGGGGCAACGGCGTGGCGAGCGCTAGTAATAA
CACTGCGGCAAGCCAGCGTGGCGGGGGTCACGCCAACTCGGGCGGAGGCG
GCGAGCGGGGAGGGGGCGGGCAGGAGCCGGCCCCGGGAAGCGCGGCAGCC
GCCGCGGCGGCGGCAGCGGCGGGCTTGGCAGCGGCGCGGGCGGCTGCCAA
GGCGGAGCCGCCTCCGGAGCCCGATGTACGAAGCGAGATCGTCGCATTGA
TGCGGGAGGCCAGCATGAGCAAGGACAAGGGCAAGCTCGAGGGAGCCATC
AAGAGGGCGGAGGACGCCGGCCTCCATTTCGAGGCCAGCCAGGGGCGGCG
TCAGCTGGGCCGGATAGTTGGGTGATGATGACCTATGTATGATCACCGTC
GTCGTCATTTCTAGTGATGAGAGTTCCCGCGTTTATCGTCTGTGGGGGGG
CGGCTTAGCTGGTACTGTTGTAATTGTGGTGTGTGAGTTTCTAGACTAGG
GGTCGGACGGGAGGGTAGTGAGTCGAGGAGCAGCAAGTCGGGCGGTACAC
TGCAACGCCGCGATGTATTATTTTTACTCGTCCCTCCGTTGGTTTTGCGC
ATGGTCTATACCTGTGCGCGTGGGTGGGTGTAACGTGTGGGATGTAAAAG
GGGCGGAGAAAATCGGCGGACGTTCTGTGGCCAGCGGTTTTTCCGCCGCT
CTTTGCCTCCGTTGGAAGTTACCCGCTTAGTAGTGTGGTGAAGGTGTTTG
TGTATGTAGCGGGCATCATGTGAGAGTCAACAAGAAGGGCCTGCTCGGGA
ATGTAGCGAGTAGTTCGTACCCCCAACGGCCCGGTGACTTTCGTGTGTGA
AAGCTACTGTTGCGAGACTACGCCCCAGCACTCACGTGACCCCCACCGGG
CGCCACTACCACAGTACTACTGCTGTTGTTGTTTGTGGCGGTGGGCTCTC
TCCTTCGTGGCGGAAAATAAGAAGAATAGACAGATTAGAGAGAAACGCTT
TTAGCGTTTTTTTTTCCTGCCGGCGGGTCTGGTAAGAGTCACACCGCATG
GCAGTGCGTTTAACCCTTTCGTTGTCCCGCCGCTTTCTCGCATTTCGCAT
TCTCGATACACGCGCGGACTTTTCTGTCACCCAATCATGGAAGAAACACA
CCGGTCAGTACGGCATGGGTGTGTGAGCATTTTCGTGCCACTTTCGTGGC
CCCCCCTCCCGAGCCGAACCTGAAGCCAAACCAGCGAGAGGTATCAAGCG
ATGAGGGAATGAGAAATACAGCTTCCCCCAGTCTGGCACGGCTCTGGCGC
GGGAAACGCTAGTCAT
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protein sequence of EsuBft956_2a-0001

>EsuBft956_2 ID=EsuBft956_2|Name=EsuBft956_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MTAEEELDKYKRLYEEQKAKVKDLERQNLQLKDTVQHLMEVGRQQGSAAA
ATIATTGTNRGPPPPGPAGNNSRNTARARPAPAASNNRNPAAPPQAGGRG
GGRGNGVASASNNTAASQRGGGHANSGGGGERGGGGQEPAPGSAAAAAAA
AAAGLAAARAAAKAEPPPEPDVRSEIVALMREASMSKDKGKLEGAIKRAE
DAGLHFEASQGRRQLGRIVG
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mRNA from alignment at Scaffold_330:893361..898137-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft956_2a-0001 ID=EsuBft956_2a-0001|Name=EsuBft956_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4777bp|location=Sequence derived from alignment at Scaffold_330:893361..898137- (Ectocarpus subulatus male Bft15b)
CAATACACTGCACAACTTGTACACAGCACAGCCGCGGGAGCGGGCGGCAG
TGGTTTGATATCATGACGGCAGAAGAAGAGTTAGACAAGTACAAGCGCCT
GTACGAGGAACAAAAGGCAAAGGTGAAGGACTTGGAGCGCCAGAACCTCC
AGCTGAAGGTGCGTTATACGAGAGAGAACGAGACGAAAAAACCGCCTTGT
GCACCGAAGTACACGGAGAAGGTGGAGAGCTACACCAGTAGCTGAGAGAG
GGATAGCTTCCGCAACCTTGCCTATCTGGTCCACTTTCCTCTATGGGTGC
CGCCGCAATAGTTTTCTGCAGATATGATTGAACTCGTTGCTTATTCCCCT
TGTTGTACCGTGCCGATGGGCAGATATCTCTGGACACGCGGACGTTTCTC
GTTGTAACCATAACGCCAAATACCACCCCCTCAGGCGCCAAAATGCCAGC
AAAGATCGCTCCGGTTGCTTCTCACAGATGCATTAGCGGCCGCATATATA
TTGGAAAAGAAGAATGGTCGAACATGATCATGGTATTACACCGCGGGTGA
TGATTTCCCGGAGAGTGGCCTGGGTCACACATTAACTATGTATCGCACGA
CGGCAAGGTTCGGTTGCGCTGTAGGCAAGAATGTGCCGTTCGCAAGCACG
TACCCCTGCACCGGACGCGCCGAAATTCGGATTAGACCAACGATGTGGGT
AGAGTCAACCGACAGGAGTCAACCGTCACCTTCGGCGATGGAAAAAATGG
CCGCAAGCAAACTCCCACCAAGGATGGGCTTTTCTCCTTGAGCGTGAGTA
CACATCACCCCCGTCCATGGGATGCCATACATTGAGAAGTACCTCGCTCG
GTGTCGAACGACATGAGCATACCTTGATGCATTTTGCGAGCCCACTTGCG
CCAGCCCCCGATACGCCGTTTTAGCATCACTGGCAGCAGGGAAGAACCTG
CAGAGCAACGGCGAACAAAAAACAGCACCAAAGGATAAGCCGACAATTGA
GCCCTCCCAATAAATCGGGTGCTGCAAGCACAAACAACGAGCGTGTGTCG
CAAGTCGAAAATGGAGAAAAAAGACGGGGAAATGTGCTTGCCGCTGGTCG
CCAGCCCCCCCAAACACCGTGCTTTTGCCGTTGATATACTGCACGCCCTT
GACTTTGCCCGAAACCAAACCCCCACAGGACACCGTCCAGCACCTCATGG
AGGTGGGCCGGCAGCAGGGATCAGCAGCCGCCGCCACCATCGCCACCACC
GGCACCAACAGAGGCCCCCCGCCTCCCGGACCCGCGGGCAACAACTCCCG
CAACACCGCCCGCGCGAGGCCCGCACCCGCCGCCTCCAACAATCGAAACC
CCGCGGCGCCGCCGCAGGCGGGCGGGCGAGGAGGTGGGCGGGGCAACGGC
GTGGCGAGCGCTAGTAATAACACTGCGGCAAGCCAGCGTGGCGGGGGTCA
CGCCAACTCGGGCGGAGGCGGCGAGCGGGGAGGGGGCGGGCAGGAGCCGG
CCCCGGGAAGCGCGGCAGCCGCCGCGGCGGCGGCAGCGGCGGGCTTGGCA
GCGGCGCGGGCGGCTGCCAAGGCGGAGCCGGTAAGCTTCCATTTTTTTTG
TTTCGGCCACCTGGCGGTAAAGGCGGGAGGCACACTTTTTTTTTGCTGTT
GATGGAGGCAAGCTTGTGTATCGATGGCGATTGTGGTGGAACATTCAGCT
GTATCTGCGCGCTACACAAGAGAGGCGCCCCGCTTTTTGGCGATATTTTT
CACGGGTGGGTTTAGTACAGTAGAGTATGTTTAGTAGAGTATCGAGAATC
TGTACTAACGGTTGAGTAGAGTAGAGTATGAGAGAGGTGAATACTCTACT
CACATGAGTAGAGTACAGAGGTTAGGTACTAAACTCAAAGAGTATGTTTA
GTAGAGTATGAAAAGCCGTACTAAACCGCAAGAGTATGTTGAGTAGAGTA
TGAAGAGCCATACTATAAAGTGAGTATGAGTAGAGTATGAAAAGCCGTAC
TACACTCAAAAAGATGTTTAGTAGAGTATTGAAGAGCCGTACTTACAAAA
GTTTTAGTAGAGTACGAAGAGCTGTACTAAACGCCACAGTATTCTTAGTA
GAGTATGAAGACCTGTACTATTAATAAACGCCACAGTATGTTTAGTACAG
TATGAAGACCTGTACTAAACGCCACAGTATGTTTAGTACAGTATGGAGAG
CCATACTAAACGCCACAGTACGCTTAGTACAGTTCATGTACTGACAATAC
TGACAGAACAACAACTCCGTACAAGCGTTGATTTGATTGCTGATAAACAT
AAACATAAACATAAACATATTACACCCCCCCCCNCTAAACGCCACAGTAT
GTTTAGTACAGTATGGAGAGCCATACTAAACGCCACAGTACGCTTAGTAC
AGTTCATGTACTGACAATACTGACAGAACAACAACTCCGTACAAGCGTTG
ATTTGATTGCTGATAAACATAAACATAAACATAAACATATTACCCCCCCC
CCCCTCGATGCTCCGTCGCCCCCTCCCTCTCCGTTCTTACCAATCACCAC
TAAACTAAAACTAAAACTAAAACTATTTTACGAGTACCCTCGCACCGGGT
TCTTCAACACAAGACGCGCAACAAGACAACGAGGTGGTCGTCGTGCCGGG
CTCAACGAGTGGAGGAGCGCCACAGCAGTCAGTGAACGTCAAGCGTCCCG
CACCGGTCTAAATATAGCAGTCAGTGAACGTCAAGCGTCCCGCACCGGTC
TAAATATNCACTCGTTGAGCCCGGCACGACGACCACCTCGTTGTCTTGTT
GCGCGTCTTGTGTTGAAGAACCCGGTGCGAGGGTACTCGTACCGGGAGAA
CCACCCGCATCGGGAGCAGATGCGGCCGAACCACCGCTCGCGTCACTCAT
GCTCAGCTGCCACTATCTCCCCTGCGGGCCACTACCTCAGTACCCCAGTA
TCTGAGTACGCGAGCGCGCGAGTATCGGAGCCTGGAGCCCACCACCACTC
TGTGCGGCGAGACTGTCTACTTTCTGCTGAATAGTGACGTCACCAACACA
CCCGTTGGTGGAAGGTAGTACGTACTCTGAGTTGAGTATGGCGGGCTGTA
CTATGGCCTGAGTAGAGTATGGGCAGCCATACTAAACGCAACAGTATGTT
TAGTAGAGTATGAGAAGCTATACTAAAGTGATAGTATAGTACAGTATAGG
AAGCCATACTAAACTCAAAGAGTATGTTTAGTAGAGTATGAAGAGCCGTA
CTAAACCGCAAGAGTACGTTGAGTAGAGTATGAAAGCCGTACTATAAAGT
GAGTATGAGTAGAGTATAAAAAGCCGTACTATACTCAAAAAGATGTTTAG
TAGAGTATTGAAGAGCCGTACTTACAAAAGTTTTAGTGGAGTATGAAAAG
CTGTAATAAAGTGTGAGTATTACTCTACTGGGCGAATAGGGCCAGATACT
TACTCAATACTCGGGTCAGTACTAATAGTAGATACTATACTTAACCTACC
CGTGATATTTTTCGAACTTATTGCCCAGCGTGTCCTCCCTCGCCCTGTGC
GTGTTTCATGACGCTCACACGGTTGCCCACGGTGAACATTCGGCCTATGA
GTAAGTATTCCTCCTTCCCTCGCTCCCACCCTCCCTCTCTGTCTGATTCT
TTGTCTGGCTGACTCTCTCAGCCTCCGGAGCCCGATGTACGAAGCGAGAT
CGTCGCATTGATGCGGGAGGCCAGCATGAGCAAGGACAAGGGCAAGCTCG
AGGGAGCCATCAAGAGGGCGGAGGACGCCGGCCTCCATTTCGAGGCCAGC
CAGGGGCGGCGTCAGCTGGGCCGGATAGTTGGGTGATGATGACCTATGTA
TGATCACCGTCGTCGTCATTTCTAGTGATGAGAGTTCCCGCGTTTATCGT
CTGTGGGGGGGCGGCTTAGCTGGTACTGTTGTAATTGTGGTGTGTGAGTT
TCTAGACTAGGGGTCGGACGGGAGGGTAGTGAGTCGAGGAGCAGCAAGTC
GGGCGGTACACTGCAACGCCGCGATGTATTATTTTTACTCGTCCCTCCGT
TGGTTTTGCGCATGGTCTATACCTGTGCGCGTGGGTGGGTGTAACGTGTG
GGATGTAAAAGGGGCGGAGAAAATCGGCGGACGTTCTGTGGCCAGCGGTT
TTTCCGCCGCTCTTTGCCTCCGTTGGAAGTTACCCGCTTAGTAGTGTGGT
GAAGGTGTTTGTGTATGTAGCGGGCATCATGTGAGAGTCAACAAGAAGGG
CCTGCTCGGGAATGTAGCGAGTAGTTCGTACCCCCAACGGCCCGGTGACT
TTCGTGTGTGAAAGCTACTGTTGCGAGACTACGCCCCAGCACTCACGTGA
CCCCCACCGGGCGCCACTACCACAGTACTACTGCTGTTGTTGTTTGTGGC
GGTGGGCTCTCTCCTTCGTGGCGGAAAATAAGAAGAATAGACAGATTAGA
GAGAAACGCTTTTAGCGTTTTTTTTTCCTGCCGGCGGGTCTGGTAAGAGT
CACACCGCATGGCAGTGCGTTTAACCCTTTCGTTGTCCCGCCGCTTTCTC
GCATTTCGCATTCTCGATACACGCGCGGACTTTTCTGTCACCCAATCATG
GAAGAAACACACCGGTCAGTACGGCATGGGTGTGTGAGCATTTTCGTGCC
ACTTTCGTGGCCCCCCCTCCCGAGCCGAACCTGAAGCCAAACCAGCGAGA
GGTATCAAGCGATGAGGGAATGAGAAATACAGCTTCCCCCAGTCTGGCAC
GGCTCTGGCGCGGGAAACGCTAGTCAT
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Coding sequence (CDS) from alignment at Scaffold_330:893361..898137-

>EsuBft956_2a-0001 ID=EsuBft956_2a-0001|Name=EsuBft956_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_330:893361..898137- (Ectocarpus subulatus male Bft15b)
ATGACGGCAGAAGAAGAGTTAGACAAGTACAAGCGCCTGTACGAGGAACA
AAAGGCAAAGGTGAAGGACTTGGAGCGCCAGAACCTCCAGCTGAAGGACA
CCGTCCAGCACCTCATGGAGGTGGGCCGGCAGCAGGGATCAGCAGCCGCC
GCCACCATCGCCACCACCGGCACCAACAGAGGCCCCCCGCCTCCCGGACC
CGCGGGCAACAACTCCCGCAACACCGCCCGCGCGAGGCCCGCACCCGCCG
CCTCCAACAATCGAAACCCCGCGGCGCCGCCGCAGGCGGGCGGGCGAGGA
GGTGGGCGGGGCAACGGCGTGGCGAGCGCTAGTAATAACACTGCGGCAAG
CCAGCGTGGCGGGGGTCACGCCAACTCGGGCGGAGGCGGCGAGCGGGGAG
GGGGCGGGCAGGAGCCGGCCCCGGGAAGCGCGGCAGCCGCCGCGGCGGCG
GCAGCGGCGGGCTTGGCAGCGGCGCGGGCGGCTGCCAAGGCGGAGCCGCC
TCCGGAGCCCGATGTACGAAGCGAGATCGTCGCATTGATGCGGGAGGCCA
GCATGAGCAAGGACAAGGGCAAGCTCGAGGGAGCCATCAAGAGGGCGGAG
GACGCCGGCCTCCATTTCGAGGCCAGCCAGGGGCGGCGTCAGCTGGGCCG
GATAGTTGGGTGA
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