EsuBft956_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft956_10a-0001
Unique Name	EsuBft956_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_330	contig	Scaffold_330:832608..834765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft956_10
Protein domains	SSF56672
Protein domains	Coil
Protein domains	PTHR19446
Protein domains	IPR005135
Protein domains	IPR000477
Owner	apollo_admin@sb-roscoff.fr
Note	probable rna-directed dna polymerase from transposon x-element os:drosophila melanogaster gn:x- [Automatic annotation]
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	1989
Evalue	1.19e-145
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Cross References

External references for this mRNA


Database	Accession
GO	0006259
GO	0003824

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft956_10a	EsuBft956_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_330 832608..834765 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft956_10a-0001-exon	agat-exon-33271	Ectocarpus subulatus male Bft15b	exon	Scaffold_330 832608..833168 +
EsuBft956_10a-0001-exon	EsuBft956_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_330 833291..833866 +
EsuBft956_10a-0001-exon	agat-exon-33270	Ectocarpus subulatus male Bft15b	exon	Scaffold_330 833914..834765 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft956_10a-0001-cds	EsuBft956_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_330 832608..833168 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft956_10a-0001-exon	agat-three_prime_utr-23461	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_330 834700..834765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft956_10a-0001	EsuBft956_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_330 832608..834699 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_330:832608..834765+
coding sequence from alignment at Scaffold_330:832608..834765+

spliced messenger RNA

>EsuBft956_10a-0001 ID=EsuBft956_10a-0001|Name=EsuBft956_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1989bp|location=Sequence derived from alignment at Scaffold_330:832608..834765+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGTTCACAAGGCAACGGGCAGTTTGCAATGAATA
CTCAATCCTCGACTACATCCTGGTAGACAGGGGGAGCACGCAGATCCCAG
AGCTGCACATAAGTGCGATAGATATAGGTTCGACCGACCACTTCCTCATA
TGGGCAAACATCGACCGATCTAGAAAGTTGGAGAGTACGAAACAGAGGAA
AGTGTTCCGGTGGAAAGTATGGCGTTTGGGAGACGAGGGGACACGGGATG
AATTCCAGAAGGGACTGGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTG
AGAAGCGTCGAAGACGGACAGGTAGACGTACAGACAGCCGGGGACAGGGT
GATTGAAGGGTGGGAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGG
GAAGGAAGGTGGGCCAAGAGAAAACANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAACGAGTATACGCCAAGTAGATGGAGGGAAG
GAGTGGTTGTGAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAAC
TACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCT
GCTGAACGACAGGATAGTGGGAGTATTGGAGAAGGAACATCGCAATAGTG
AGGGCCAGGCAGGTTTCCGAAAGAAGAGGGGGTGCGTATACTACGTATTC
ACGGTAGGGACAATCATCCAAGGTAGAAAGAGGGCGGGAAAGTCGACGTA
CTGCCACTTCGTGGACGTGAAAAAGGCATTCGATGCCGGGAAAATGTGGA
GAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGAC
GGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTG
CACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAG
TCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCG
GTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCC
TGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGT
GGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAG
AACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGAT
TGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACT
GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA
GCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCAT
CAAATCGACGGTTTTGAAGAGCGTAATCATACCGCCGCCAGAGTACGCCG
GAGAAGTAAGGGCAGGAAATAAGAAGGTAGTGAAAGAACTCGAGACGGCG
CAGATGAAAGCAGCGAAAATCATCCTAGGATGCTCCAAGCGCACAAGTAA
TGCAGCCGTCAGGGCAGAAATGGGGATCCAATCCCTACGGTCGGGAAGAG
ACGCGAGGAAGCTGACATGGTAGTATCGCATGTGCGGGATGGGAGAGGAG
AGGTTGCCGAGAATTGTATGGGAGGCGAAGTGGGCAATC

protein sequence of EsuBft956_10a-0001

>EsuBft956_10 ID=EsuBft956_10|Name=EsuBft956_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=640bp
MVGDFNSRVGKASSRGQAIGQHGEDKVNDNGVRMLEFLGSNELMVLNGRR
ECDKPEFTRQRAVCNEYSILDYILVDRGSTQIPELHISAIDIGSTDHFLI
WANIDRSRKLESTKQRKVFRWKVWRLGDEGTRDEFQKGLAGSVESFRKLL
RSVEDGQVDVQTAGDRVIEGWESIVNATAERVVGRKVGQEKTXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXNEYTPSRWREGVVVNLFKKGDKTDPGN
YRGITLLNTVGKVFCKLLNDRIVGVLEKEHRNSEGQAGFRKKRGCVYYVF
TVGTIIQGRKRAGKSTYCHFVDVKKAFDAGKMWRVLKKMTECTKSAVMLD
GELSKFFDIEQGVPQGCTLSPTLFQVFINDLLEVVEAVRKGVKVGDTETS
VSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSANVQKSAVMVCNE
NKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNAHMSKVAEKGKAR
AGKLHPILANRHLDTRIKSTVLKSVIIPPPEYAGEVRAGNKKVVKELETA
QMKAAKIILGCSKRTSNAAVRAEMGIQSLRSGRDARKLTW

mRNA from alignment at Scaffold_330:832608..834765+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft956_10a-0001 ID=EsuBft956_10a-0001|Name=EsuBft956_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2158bp|location=Sequence derived from alignment at Scaffold_330:832608..834765+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGTTCACAAGGCAACGGGCAGTTTGCAATGAATA
CTCAATCCTCGACTACATCCTGGTAGACAGGGGGAGCACGCAGATCCCAG
AGCTGCACATAAGTGCGATAGATATAGGTTCGACCGACCACTTCCTCATA
TGGGCAAACATCGACCGATCTAGAAAGTTGGAGAGTACGAAACAGAGGAA
AGTGTTCCGGTGGAAAGTATGGCGTTTGGGAGACGAGGGGACACGGGATG
AATTCCAGAAGGGACTGGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTG
AGAAGCGTCGAAGACGGACAGGTAGACGTACAGACAGCCGGGGACAGGGT
GATTGAAGGGTGGGAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGG
GAAGGAAGGTGGTACGATGTGGGGTATCGGTTAAGTGGTGGGATGACGAG
CTGAAAGAAGACATAGGGGGACGTAAAGTAGCCTTCAAGCAGTACCTGAG
TGAGGCGTCTTAGGAGAGTTGGGAAAAGTACAGGGCCAAGAGAAAACANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGAGTAT
ACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTCAAGAAAGG
AGACAAGACTGACCCAGGAAACTACAGGGGGATCACACTGTTGAACACAG
TAGGAAAAGTGTTCTGTAAGCTGCTGAACGACAGGATAGTGGGAGTATTG
GAGAAGGAACATCGCAATAGTGAGGGCCAGGCAGGTTTCCGAAAGAAGAG
GGGGTGCGTATACTACGTATTCACGGTAGGGACAATCATCCAAGGTAGAA
AGAGGGCGGGAAAGTCGACGTACTGCCACTTCGTGGACGTGAAAAAGGCA
TTCGATGCCGTATGGAGAAATGGACTGTGGAAACAACTGTCAAATACGGG
ATCAAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAA
AAGCGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGC
AGGGGGTCCCACAAGGTTGCACGCTGTCCCCAACATTGTTCCAGGTGTTC
ATCAACGATCTGTTGGAAGTCGTAGAGGCAGTCCGGAAGGGAGTAAAAGT
AGGGGACACGGAAACGTCGGTTTCAGGAATGCTGTTTGCGGATGATTTTG
TCGGTATGTCGGACACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCG
AAGAAGTTTACTGATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGC
CGTCATGGTATGCAACGAGAACAAGGAGGAACCAGTAGAACATAGATGGA
AGTGGGGGATCGAGGAGATTGCAGTAGTGGACCAGTACACATACCTCGGA
GTAGAGATCGCAAAAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGC
GGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCACCCAATACTCGCAAACC
GGCACCTCGATACACGCATCAAATCGACGGTTTTGAAGAGCGTAATCATA
CCGCCGCCAGAGTACGCCGGAGAAGTAAGGGCAGGAAATAAGAAGGTAGT
GAAAGAACTCGAGACGGCGCAGATGAAAGCAGCGAAAATCATCCTAGGAT
GCTCCAAGCGCACAAGTAATGCAGCCGTCAGGGCAGAAATGGGGATCCAA
TCCCTACGGTCGGGAAGAGACGCGAGGAAGCTGACATGGTAGTATCGCAT
GTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGCGAAGT
GGGCAATC

Coding sequence (CDS) from alignment at Scaffold_330:832608..834765+

>EsuBft956_10a-0001 ID=EsuBft956_10a-0001|Name=EsuBft956_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1923bp|location=Sequence derived from alignment at Scaffold_330:832608..834765+ (Ectocarpus subulatus male Bft15b)
ATGGTGGGCGATTTCAACTCCAGAGTAGGGAAAGCTTCCAGTAGAGGACA
GGCGATCGGGCAGCACGGAGAAGACAAAGTGAATGACAACGGAGTGAGGA
TGCTTGAATTCTTGGGAAGCAACGAACTGATGGTGTTGAACGGTAGGAGG
GAATGCGATAAGCCGGAGTTCACAAGGCAACGGGCAGTTTGCAATGAATA
CTCAATCCTCGACTACATCCTGGTAGACAGGGGGAGCACGCAGATCCCAG
AGCTGCACATAAGTGCGATAGATATAGGTTCGACCGACCACTTCCTCATA
TGGGCAAACATCGACCGATCTAGAAAGTTGGAGAGTACGAAACAGAGGAA
AGTGTTCCGGTGGAAAGTATGGCGTTTGGGAGACGAGGGGACACGGGATG
AATTCCAGAAGGGACTGGCTGGTAGTGTAGAATCCTTCAGGAAACTGCTG
AGAAGCGTCGAAGACGGACAGGTAGACGTACAGACAGCCGGGGACAGGGT
GATTGAAGGGTGGGAGTCCATCGTGAACGCAACGGCAGAGAGAGTAGTGG
GAAGGAAGGTGGGCCAAGAGAAAACANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAACGAGTATACGCCAAGTAGATGGAGGGAAG
GAGTGGTTGTGAACTTGTTCAAGAAAGGAGACAAGACTGACCCAGGAAAC
TACAGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCT
GCTGAACGACAGGATAGTGGGAGTATTGGAGAAGGAACATCGCAATAGTG
AGGGCCAGGCAGGTTTCCGAAAGAAGAGGGGGTGCGTATACTACGTATTC
ACGGTAGGGACAATCATCCAAGGTAGAAAGAGGGCGGGAAAGTCGACGTA
CTGCCACTTCGTGGACGTGAAAAAGGCATTCGATGCCGGGAAAATGTGGA
GAGTGCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGAC
GGAGAACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTG
CACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCTGTTGGAAG
TCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACGGAAACGTCG
GTTTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCC
TGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGT
GGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAG
AACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGAT
TGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACT
GCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGA
GCAGGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCAT
CAAATCGACGGTTTTGAAGAGCGTAATCATACCGCCGCCAGAGTACGCCG
GAGAAGTAAGGGCAGGAAATAAGAAGGTAGTGAAAGAACTCGAGACGGCG
CAGATGAAAGCAGCGAAAATCATCCTAGGATGCTCCAAGCGCACAAGTAA
TGCAGCCGTCAGGGCAGAAATGGGGATCCAATCCCTACGGTCGGGAAGAG
ACGCGAGGAAGCTGACATGGTAG