EsuBft955_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft955_9a-0001
Unique Name	EsuBft955_9a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_276	contig	Scaffold_276:281922..286444 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft955_9
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	140
Hectar predicted targeting category	no signal peptide or anchor
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a	EsuBft955_9a	Ectocarpus subulatus male Bft15b	gene	Scaffold_276 281922..286444 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a-0001	EsuBft955_9	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_276 286243..286404 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a-0001-exon	EsuBft955_9a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_276 281922..282688 -
EsuBft955_9a-0001-exon	agat-exon-101620	Ectocarpus subulatus male Bft15b	exon	Scaffold_276 285808..286444 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a-0001-exon	agat-three_prime_utr-23459	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_276 281922..282688 -
EsuBft955_9a-0001-exon	agat-three_prime_utr-23460	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_276 285808..286242 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a-0001-cds	EsuBft955_9a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_276 286243..286404 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_9a-0001-exon	agat-five_prime_utr-15272	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_276 286405..286444 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_276:281922..286444-
coding sequence from alignment at Scaffold_276:281922..286444-

spliced messenger RNA

>EsuBft955_9a-0001 ID=EsuBft955_9a-0001|Name=EsuBft955_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1404bp|location=Sequence derived from alignment at Scaffold_276:281922..286444- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGCGCTTGCGGTCTGTCGAAGAGCTCCCGGCCATATCGCATGAGGCACG
CGCACGCTCCTCTGCTCCTGTATGTAGTTGATCTCCCGGGTGAGGTCGCC
ATGTTCGTTGACGAGGCCACCGAGGTACCGGAACTCTGTCGTCTGAGCGT
ATTTCTGTCCCGCGGCTTCGATGGTCAGTGGTGGAGGCGGGGCGGGCTGT
GATGTTGTAGTCGGCTTGTCCTTTGCGCACATCAGGAGCGTCGTACAAAC
CACTCGGAAAAAGAAAACAAAATGATGAACTTGAGGAGTGGCCATAATCG
GGTACACCCGGCCCCAATCCGCCCATTATCGGGTACCTTTTTTAACACAG
TCGGCAGCGCCCTCCTGGCGCCATCTGATTGGCCGACGCCCGCCCCTACC
CGGCCCTGACCCTATTCCCACCGGGTGCACCCGATCTTGGCTACTCACCC
CCCGGAGGGGTACCCGATCTTACTCTCGCCTACCCGAAAATGGCTGGGCT
ATTCGACCACCAGCAGACCACGTTCACGAACACACGTCACCAACACCCCG
CACTCGAGTTCCGACGCGTACGACGGCGGGCGGAGGCGGCCCTAACACGG
CTAACGCGGCGGAACTCTCGTTAGAAGTGGATCAGTGACTCCTCCTGCAA
CCCACCGCCGACGGCGGAACTCTCTCGGTTCTCGTTTCGTATCGGAGGGG
GAGGAGAAAGAGGGCCAGGCGGGCGGCGGTGGATGAATACCTCTCAATAC
CTCACTCACGTGATCACGTGAGCTGCACACAAATACATGACGCAGCTCAG
ATATGTCCACGGAAGCATCAGGCACAGAAGCATCAGGGTGTCGCTTTCGT
CTGGAATACATGTATAGACACATCAAGACCGGAGATGTATGGCACGTTGT
TGTGCACGCAGAGGGTCGTTCGTACACAGCAAAATGCAGCAGCAGCAAGC
AGTGGATGGCGTGGTTGTGTCTCGATCAAGACCGGAGATATATGACACAT
TGTTGTGGAGGAGGAAGAGGATCGTACATACATACAGTAATGCAGCAGCA
GCAGGCAGTGGATGCCATGGGACCTCAGATTAATGATAATAATTCCTTGA
CTTCGAACTCTCGTGAGTACGTGGGAGAGACAAGGAACTGCGGGCTTGCC
ACAGGAGATGGTGAAATATAGAGAGAGTCTCAGTGGTGGTGCACGCAGCA
TGAACGATGTCCTAAGATGACTGGTGGTGAAGTAACACGCGCCTTGCGCG
AGGATCGCGGTGTTCTCTACTTCATCGCTCATATTCTGCCGATGCCAGTC
GACTGTTCAGGCACGAGTGCCGAAACTAACCACGAGAGACTTGGTGGGTT
GAGGAGCGAGATCTACTTGCAGGAGCGAGATCTACTTCAAACGAGAAGAG
TTCC

protein sequence of EsuBft955_9a-0001

>EsuBft955_9 ID=EsuBft955_9|Name=EsuBft955_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=53bp
MRHAHAPLLLYVVDLPGEVAMFVDEATEVPELCRLSVFLSRGFDGQWWRR
GGL

mRNA from alignment at Scaffold_276:281922..286444-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft955_9a-0001 ID=EsuBft955_9a-0001|Name=EsuBft955_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4523bp|location=Sequence derived from alignment at Scaffold_276:281922..286444- (Ectocarpus subulatus male Bft15b)
TGGCGCTTGCGGTCTGTCGAAGAGCTCCCGGCCATATCGCATGAGGCACG
CGCACGCTCCTCTGCTCCTGTATGTAGTTGATCTCCCGGGTGAGGTCGCC
ATGTTCGTTGACGAGGCCACCGAGGTACCGGAACTCTGTCGTCTGAGCGT
ATTTCTGTCCCGCGGCTTCGATGGTCAGTGGTGGAGGCGGGGCGGGCTGT
GATGTTGTAGTCGGCTTGTCCTTTGCGCACATCAGGAGCGTCGTACAAAC
CACTCGGAAAAAGAAAACAAAATGATGAACTTGAGGAGTGGCCATAATCG
GGTACACCCGGCCCCAATCCGCCCATTATCGGGTACCTTTTTTAACACAG
TCGGCAGCGCCCTCCTGGCGCCATCTGATTGGCCGACGCCCGCCCCTACC
CGGCCCTGACCCTATTCCCACCGGGTGCACCCGATCTTGGCTACTCACCC
CCCGGAGGGGTACCCGATCTTACTCTCGCCTACCCGAAAATGGCTGGGCT
ATTCGACCACCAGCAGACCACGTTCACGAACACACGTCACCAACACCCCG
CACTCGAGTTCCGACGCGTACGACGGCGGGCGGAGGCGGCCCTAACACGG
CTAACGCGGCGGAACTCTCGTTAGAAGTGGATCAGTGGTTCTCTCTCCTG
CAACGCGGTGGAACCCTCGTTTGAAGTAGATCTTGCTCCTGCAAGTAGAT
CTCGCTCCTCAACCCACCAAGGCGACCATACCCACTGCATTTAACACCCA
CCCACATGTCAGTGATGAAACCCCAACCACACGCCTCTATCGGCGGCCAC
GGCAGGCGGCAATGATGAGATAATGTTCTCCCATGCCCTTCTCACATGGA
ACGACATGCCATTAGTCTACACAACAAGGTAAATATGTTCTCCCGCGCCG
CACATGCCCCCATACATCACACACAAAAAATAAGTTGATGACGAAAATCT
ACACACCCCGAGACACGCTTGCTCCGCAACCACGTAAGGGTGCTATAATA
GAACACCCGAAACCGAGATTAAGGTACCCAACACAGCAGAGTGTAGCCAG
GGGGGGGGGGGCGTACTCTTATGTTTTGCATGTCTTAGCGGTTAGACCAT
TGACCACGCGTCCTCGAGAGGACGGAGCATTGTTCCCACAGGACCGATCA
CCGATGGCCAATCGTTCCTTTCTACTTTGCCAAAGGTGGCTCAAAAATGT
CTTCCCTAGTCTGTCTATCCTAACGATATCCCTTCCCGCCTTTTCAACCC
ACCTCCTATGCCCCAGTACAGCTACCGTCCTTTCCTCTCTATTCCATGCC
TCAAACATCTCCCTGTACGTTCCATCTATTTTTCCCAGCTCAGTCACGTA
CACTTCCCTCTCCTTCTTGTACAACGGACATTCCGCGACTACATGAACAC
GGTCTTCGCATTCGAAGCCGCAATCACATTTGAACTCGTCGTCTTCCTCG
TCTACCGTCCTATGTCTTCGTCGACGTTCTCGAAGGCCTATGTCCCCGGT
CCTGAATTTGACCTTAAGCTTTGTTCCTGCATCCATTGGTCCATGTAGGT
AGTCCTTGAACCCTATTCCTTCCTTCAACATTCCGTACACTTCTAGACCC
TCCTTATCCTTGGATTCTTTCCTCAGATTCTGTTCTTCTCTCTCGGCACA
AGCAACAGATATCTTCTCCTTGAACCCCTGTAGACCCTCCGTTTCCAGCG
TTTCATCTTCGTCGATGTCGAGCCCCTTCCATACGTCCTCTACAACCTTG
ACCCATTCCGTGGGTTGTCTACCCCTCTTTTTGTTTGCCCACTTCGCCTC
CCATACAATTCTCGGCAACCTCTCCTCTCCCATCCCGCACATGCGATACT
GCCAGGTCAGCTTCCTCGCGTCTCTTCCCGACCGTAGGGATTGGATCCCC
AATTCTGCCCTCACGGCTGCATTACTTGTGCGCCTGGAGCATCCTAGGAT
GGTTTTCGCTGCTTTCATCTGCGCCGCCTCGAGTTCTTTCACTACCTTCT
TATTTCCTTCCCATACTTCTCCGGCGTACTCTAGCGGCGGTACGATTACG
CTCTTCAAAACCGTCAATTTGATGCGTGTATCGAGGTGCCGGTTTGCGAG
TATTGGGTGCAGCTTCCCTGCTCGTGCTTTGCCCTTTTCCGCTACCTTGG
ACATGTGTGCATTCCACGAGCAGTCTTTTGCGATCTCTACTCCAAGGTAT
GTGTACTGGTCCACTACTGCAATCTCCTCGATCCCCCACTTCCATCTATG
TTCTACTGGTTCCTCCTTGTTCTCGTTGCAAACCATGACGGCACTCTTCT
GAACGTTGGCAGACAATCTCCACTTATCAGTAAACTTCTTCGCCGCGTCA
ATTTGCAGTTGCAGTCCCTCAGGGGTGTCCGACATACCGACAAAATCATC
CGCAAACAGCATTCCTGAAACCGACGTTTCCGTGTCCCCTACTTTTACTC
CCTTCCGGACTGCCTCTACGACTTCCAACAGATCGTTGATGAACACCTGG
AACAATGTTGGGGACAGCGTGCAACCTTGTGGGACCCCCTGCTCAATGTC
GAAGAATTTTGACAGTTCTCCGTCTAGCATGACCGCGCTTTTCGTACACT
CTGTCATCTTCTTCAGCACTCTCCACATTTTCCCCTTGATCCCGTATTTG
GACAGTTGTTTCCACAACCCATTTCTCCACACGGTGTCGTATGCCTTTTT
CACGTCCAGGAAGAAGCAGTACGTCGGCTTTCCCGCCCTCTTTCTACCTT
GGATGATTCTCCCTACCGTGAACACGTGGTCTACGCACCCCCTCTTCTTG
CGGAAACCTGCCTGGCCCTCACTAATGCTATGTTCCTTCTCCAATACTCC
CACTATCCTATCGTTCAGCAGCTTACAGAACACTTTTCCTACTGTGTTCA
ACAGTGTGATCCCCCTGTAGTTTCCTGGGTCAGTCTTGTCTCCTTTCTTG
AACAAGTTCACAACCACTCCTTCCCTCCATCTACTTGGCGTATACTCGTT
TTTCCACACCCAATTGTATAGCAGTACCATCAGCTGGATCATCCCCTTCC
CCCCAAACTTCATGAACTCGTTGACTATCCCATCCGCTCCTGCTGCTTTG
TGGCACTTCAGCTTGTTCACACACGCCTCAACCTCGTCCTCAGTGAACTC
CTTTTCTAGTTCTACGTTCCCAACGTCTGCCTTCGATGTGTAGCCAGGGG
GGACATGAAAAAAAAAGAAACACAGCACAGAGGCCGAAGGCAATAATAAT
AAAAAAATACAACGCATAGAAGAGAAAATGTGCCTATTAAGGACCACCCC
CCCATTAAGGACCACATTTTTTAAACGGGCATACCAGGCGCACAATTCGC
CGCCCCCCCCTTGTCCTTTTTTTTTAGAGGTGTGGCCAAAATCGGGTACA
CCCGGCCCCAATCCGCCCATTATCGGGTACCCTTGTTTTACACAGTCGGC
AGCGCCCTCCTGGCGCCATCTGATTGGCCGACGACCGCCCCTACCCGGCC
CTGACCCTATTCCCACCGGGTGCACCCGATCTTGGCTACCCACCCCCCGG
AGGGGTACCCGATCTTACTCTCGCCTACCCGAAATGGCTGGGCTATTCGA
CCAACAGATCACCTGCAGACCACGCTCACGAACACACGTCACCAACACCC
CGCACTCGAGTTCCGACGCTTCCGACGGCGGGCGGAGGCGGACCTAACAC
GGCTAACGCGGCGGAACTCTCGTTAGACGTGGATCGGTGGATCTCTCTCC
TGCAAGACTCCTCCTGCAACCCACCGCCGACGGCGGAACTCTCTCGGTTC
TCGTTTCGTATCGGAGGGGGAGGAGAAAGAGGGCCAGGCGGGCGGCGGTG
GATGAATACCTCTCAATACCTCACTCACGTGATCACGTGAGCTGCACACA
AATACATGACGCAGCTCAGATATGTCCACGGAAGCATCAGGCACAGAAGC
ATCAGGGTGTCGCTTTCGTCTGGAATACATGTATAGACACATCAAGACCG
GAGATGTATGGCACGTTGTTGTGCACGCAGAGGGTCGTTCGTACACAGCA
AAATGCAGCAGCAGCAAGCAGTGGATGGCGTGGTTGTGTCTCGATCAAGA
CCGGAGATATATGACACATTGTTGTGGAGGAGGAAGAGGATCGTACATAC
ATACAGTAATGCAGCAGCAGCAGGCAGTGGATGCCATGGGACCTCAGATT
AATGATAATAATTCCTTGACTTCGAACTCTCGTGAGTACGTGGGAGAGAC
AAGGAACTGCGGGCTTGCCACAGGAGATGGTGAAATATAGAGAGAGTCTC
AGTGGTGGTGCACGCAGCATGAACGATGTCCTAAGATGACTGGTGGTGAA
GTAACACGCGCCTTGCGCGAGGATCGCGGTGTTCTCTACTTCATCGCTCA
TATTCTGCCGATGCCAGTCGACTGTTCAGGCACGAGTGCCGAAACTAACC
ACGAGAGACTTGGTGGGTTGAGGAGCGAGATCTACTTGCAGGAGCGAGAT
CTACTTCAAACGAGAAGAGTTCC

Coding sequence (CDS) from alignment at Scaffold_276:281922..286444-

>EsuBft955_9a-0001 ID=EsuBft955_9a-0001|Name=EsuBft955_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=162bp|location=Sequence derived from alignment at Scaffold_276:281922..286444- (Ectocarpus subulatus male Bft15b)
ATGAGGCACGCGCACGCTCCTCTGCTCCTGTATGTAGTTGATCTCCCGGG
TGAGGTCGCCATGTTCGTTGACGAGGCCACCGAGGTACCGGAACTCTGTC
GTCTGAGCGTATTTCTGTCCCGCGGCTTCGATGGTCAGTGGTGGAGGCGG
GGCGGGCTGTGA