EsuBft955_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft955_7a-0001
Unique NameEsuBft955_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_276contigScaffold_276:294931..298992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft955_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length174
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_002390.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7aEsuBft955_7aEctocarpus subulatus male Bft15bgeneScaffold_276 294931..298992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7a-0001EsuBft955_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_276 295825..298954 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7a-0001-exonagat-exon-101611Ectocarpus subulatus male Bft15bexonScaffold_276 294931..295845 -
EsuBft955_7a-0001-exonagat-exon-101614Ectocarpus subulatus male Bft15bexonScaffold_276 296613..296724 -
EsuBft955_7a-0001-exonagat-exon-101612Ectocarpus subulatus male Bft15bexonScaffold_276 297323..297630 -
EsuBft955_7a-0001-exonEsuBft955_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_276 298214..298351 -
EsuBft955_7a-0001-exonagat-exon-101613Ectocarpus subulatus male Bft15bexonScaffold_276 298718..298992 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7a-0001-exonagat-three_prime_utr-23457Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_276 294931..295824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7a-0001-cdsEsuBft955_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_276 295825..295845 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft955_7a-0001-exonagat-five_prime_utr-15270Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_276 298955..298992 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft955_7a-0001 ID=EsuBft955_7a-0001|Name=EsuBft955_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1748bp|location=Sequence derived from alignment at Scaffold_276:294931..298992- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACGGGCCCTCCGGCAGTCGGACCGGGGGGCGCGCAGATGGTCGTCCCC
ACTTTCCCGCCGGGGCCTTTGCAGGCGCAGCAGCAGCAGATGGCGGCGGT
AGCGGCGGCGGCGGCAGCAGCTACGGCGGCGGCGGCGGGGGGCAACAACG
CGATGAACCCGCACCACATGGCAGGCGTTGTGCCGCCGCACGTGATGGCG
GGGGCGCGGGGACCCATGCCGCCTCAGCAGTTCCCGCAGCCCATGTATCG
GGCGGCGATGGGACAGCCTCCGCAGATGTTCATGCAACCGCCTCGCATGC
CGATGGCTCCGGGGCAGATCCAAGGCTTTCCGCCGCAGGGGATTCAGGTC
GTGGGCCAGCCAGGGGGGGCGGCGCCCCCCCCGGGATCTCCCTTCTATCA
CGGCCAGATGCAGATGGCCCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGC
AACCGGGACAGCCGCAGCTTCAGCTGCCGCCACCACAGATCCCGGTGCCG
CAAGGCCAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAGCAGCAGCAACA
GCAGCAGAGAGGTTTCCCAATGATGCCGGGACACCCCGGGGCGGGCGGGG
CTCCCCCGCCCTCCCACCCCGCCCCTCCCCAGACACCTCCTCAGTCGCAG
AGACCGGGGAACGCGGGCGGAATGGGCGGCATGCGGCCCGGGGGCGCGGG
GGGTCCGCACGAGCACGGGGGGGATGGACACGGCGACGACTCGGGAGGCG
GCCACTCGCGAAGAGGGCGCGGAGGCGGCAGGGGGGGTAGGGGGGGCTTG
TCGAGACAAAACAGCGCCAACAGAAAACACAGGGGCGGAAGCGGCGGTTC
TTGAAGAGGCAGCAGCCGCGCGCCCGTTATTTCCGCCGCGACTTGTTTTT
TCGTCTCGACAAAGTCTCTCTCTTGACGTGCCTCCCTCTGGGACGCGGGC
CGGGTGAAATCCGGTGACTGGAACGAGTGGAGACTACGCAGATACAGTAC
TTTTTATTTACCCCGGGAAGATGGATGCCACTTTTTGGGTGTGTGGTTGA
GTTCGGGCGGTGTGTTGTGTGTGTGTGGAGTGAGTGAGTGGTAATGTGTC
CCGAAGCATCTTGAATTGCCGTGTATGATGTACGAGATGAAAGCGACACC
TTTCTTGCGGAGAGTCTTGTGTGTTCCTTGGTGAAGGTGGTGGTTGTGTT
GGGCAGGGGTTGGAGCGCCGATTTTTTTTTTGCGGCTGGTGAACGAACCA
TGAACTGGTTGGTGTCCACGGCCTGGGATATATGGGATTGTGTCGGTGGA
AAAATGAATGCTTTTCGATCGAGTCTGTGTTGGTGGGTAACTGGAACGCG
CGAGAGGACGTCGAGGGTGACGACAGATCGGAATAATGCTTTTTCTTTCC
GCGGGACGAGAGGTTGCGTGATGCCGTGCGCCTGCCTGCATGATTCCCCA
CGTATTCCTCCTTGGTGGTGGTTTGTCGTTTGTCGCAGTGTGCATTTTTT
TTTTTTCCTGTTTTGCTCGAAGGAAAAAGTTGGCGCTTTACTGGCCTTGC
CTGCAGGCGGTAGAGGCGGAGAATGGGGGCAGGCAAGTGAGATATCATTA
TCCTTCAGTTGATTGCCCGCGGGAAGATGATTTCCACACATGTTTGCCCC
GTGAGAGCTCCTCGATGTACTTACACCGGCGGATCAACATGCTTCGAGCA
TCCGAAGGGACGAAACGCTCTCAGGATTTACCCTTTTACGTCGTACGT
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protein sequence of EsuBft955_7a-0001

>EsuBft955_7 ID=EsuBft955_7|Name=EsuBft955_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=271bp
MVVPTFPPGPLQAQQQQMAAVAAAAAAATAAAAGGNNAMNPHHMAGVVPP
HVMAGARGPMPPQQFPQPMYRAAMGQPPQMFMQPPRMPMAPGQIQGFPPQ
GIQVVGQPGGAAPPPGSPFYHGQMQMAQQQQQQQPQQQPGQPQLQLPPPQ
IPVPQGQQQQQQQQQPQQQQQQQRGFPMMPGHPGAGGAPPPSHPAPPQTP
PQSQRPGNAGGMGGMRPGGAGGPHEHGGDGHGDDSGGGHSRRGRGGGRGG
RGGLSRQNSANRKHRGGSGGS
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mRNA from alignment at Scaffold_276:294931..298992-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft955_7a-0001 ID=EsuBft955_7a-0001|Name=EsuBft955_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4062bp|location=Sequence derived from alignment at Scaffold_276:294931..298992- (Ectocarpus subulatus male Bft15b)
TCACGGGCCCTCCGGCAGTCGGACCGGGGGGCGCGCAGATGGTCGTCCCC
ACTTTCCCGCCGGGGCCTTTGCAGGCGCAGCAGCAGCAGATGGCGGCGGT
AGCGGCGGCGGCGGCAGCAGCTACGGCGGCGGCGGCGGGGGGCAACAACG
CGATGAACCCGCACCACATGGCAGGCGTTGTGCCGCCGCACGTGATGGCG
GGGGCGCGGGGACCCATGCCGCCTCAGCAGTTCCCGCAGCCCATGTATCG
GGCGGCGATGGGACAGCCTCCGCAGGTGTGTGTGTTGGTCAGCTGGGGGT
GGGTGGGTTGGTGGGTGGGAGGGAAGCCCGTAGATTGCTTGGAAGATGGG
AAAGTTGTGCCAGGTCGCTTTTGCGAACGCCTGCTGAGCTCCCTGTCGAG
TTGTATGGGATGAACGCGGGTAGTAATGTATGTGAACCTCCTCCCTCGGT
GGTTTGGTAAGCCCCTCGCAGCACAGCAGACGTGTGCGCGGAAGGGTGTC
AAACGACCGTGGCTTTCTCGCGTGAGATGTCCATCGCGCTGGCTGGATTT
GTGGTGACCAACACCAACCTCCCCCCACTCCCGTCTGCCCGCCACCTCTG
GATCGTGGTTTACCCCCCTTCCTTTCCCCCCGAAAATACAGATGTTCATG
CAACCGCCTCGCATGCCGATGGCTCCGGGGCAGATCCAAGGCTTTCCGCC
GCAGGGGATTCAGGTCGTGGGCCAGCCAGGGGGGGCGGCGCCCCCCCCGG
GATCTCCCTTCTATCACGGCCAGATGCAGGTATTTAGGTCGAGGGGGTTG
TTGTAGATGACCCATGACCATGAGGCTGTTTCCACAACGTGCCGCAGTAC
TTCGTTTTTTTGTGTGAAGGAGGGTCGTGCGTATTCACTGCACTACAGTG
GGTGGCCCGATATAGTGCCGGTTGAATAGTGCCGGTTGCCGGTATAGTGC
CGGTGTTTTCGGCTCGCACACACCGGAATATCAAGTCTTTCTGTACTCTG
AATAGTGCCGGTGCCCGGTATAGTGCCGCTTTGCTCTCTGAACACATACC
GGCACTATAGAGGGCCCCCTACTGTATGTGTTAGTAGCCGCGCTGTGGCA
AGCTGAGGCCTGACGGGCAACGTTGTGCACCGGAGAAGGGGATTGTAGAA
GGAAGTACGTGGTCGGTTCTGCTGTACGAAGGATAAGGGGGTGAATGAGG
GCGTCCGCGTGCACCGTAACACCCATGTTATTGGATCGTTTTGGGGTAAT
TTGTACGAAAGCACGAGGTGTATTGCGTGCCTGACGTGTACCCGGGTGCT
GAAAGCCACGACGCCCTTCACTTGACGCGTTTGTCCCGCTGGTTCCTACC
CTCCGCCCTCAGATGGCCCAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCA
ACCGGGACAGCCGCAGCTTCAGCTGCCGCCACCACAGATCCCGGTGCCGC
AAGGCCAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAGCAGCAGCAACAG
CAGCAGAGAGGTTTCCCAATGATGCCGGGACACCCCGGGGCGGGCGGGGC
TCCCCCGCCCTCCCACCCCGCCCCTCCCCAGACACCTCCTCAGTCGCAGA
GACCGGGGAACGCGGGCGGAATGGGCGGCATGCGGCCCGGGGGCGCGGGG
GGTCCGCACGAGCACGGGGGGTGAGCTGGGTGGTTGACATGTTGGGGGAC
GGAGAGCAGTTTGTTTCTGTGATGTGTATGCTTAGGTTGTGGTTTGCGTG
GGTGGTTTGGTACCGGCTTGCTTCGAGGGGGGTGTGTTCGCTTTCATCGT
TCTGTGTTTGTCAAGTGTTTTTTTTTCTTTTCGGGCGCTGGCTATTGAGA
ACGTCTGGAACGTAGGCGTGATATCTGTGTGTTTGTTTGCTCCGCCTCTG
CGCTGGCCGTGTTTGTTTTCGCTGTTCTGTACGCACGTGTTTGCTGTCGT
ACGGTGGTTGGTGCTTGTCGGGCTTGGCTATACTGTTGGCGAAACGTTGT
GGCCCGTGTTGTTGCTTCATGTCGTGCCGCCCCTTGGTTAACTTCGCTCG
CGATTTTCACGATTTTGGCGTGTCGGATATTCCCCGCGTTTGTTTCCCGT
TGTTGCGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCATCCTCCGCTTGC
TTGTTATCGGTTTCAACCGCTTTTTTTTTTTTTTTTTTTGTGCGCGCACG
TGTTTCATTGTATGGCAGGGATGGACACGGCGACGACTCGGGAGGCGGCC
ACTCGCGAAGAGGGCGCGGAGGCGGCAGGGGGGGTAGGGGGGGCTTGTCG
AGACAAAACAGCGCCAACAGAAAACACAGGGTGAGCGATCGAGATAAAAG
AGTCGTTTGTTGTTTGTCGCACACGCACCGGCGGCGTGCGCAGGGTAATC
AATGCCCGTTTTTTCGCGACTGACTGGCGTTTCGAGTTGCGAGGCGAGTT
GTGAAGCGATTTGAGTCATGCGCAGCGTTATGGCACGCAATCCCACGAAG
TGGCGGTGAGTCTTTGTCGCACGCGGGGGGGGGGGACACGAATGAGCGGC
GCCGCCGTTGTGCCTTGCCAAAGCCTCCCTCCGACTGCCCAGCAGGGTAT
TCGGGGCGTCTCGGGGCGAAGGCGAGACGCGTTCCTCTTCAACGACGAAT
CCTGCCCCCGCACGCTACTCGAAGAAGATGTGAAATTAACGTACCATGCA
GGTGCTGGTTCTGAATGAGGACCTGTTATTTTCGCGCTCTCGAAAAATTC
ATTAACCCGCCAGGCGCCACAACCCGAGTCAGTCACTCTTGGTAGGCAAC
CGCTGTTTTTTTTTGTTTTTTGTTTTTACTCCCATCATTGGACTCTGTCG
TCTGCCCCTCTGGCCCCTATCCTCCACTTCTTCTAGCTAGACGACCCAAC
CGGGGTCACATAGGAGGGGGGGGCTGGACCCCCTCCTGCGGTTCATGCCT
GAGGTATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGCGTCCC
CCGCTGTGTTCACCAGTGAATCCCCGACTGAATTTCCTCTCCCGTTTTAT
GCGACTGCTGCGGCTGCTGTTGCTTGTTGTTTTTTTTCGTCTCGCAGGGC
GGAAGCGGCGGTTCTTGAAGAGGCAGCAGCCGCGCGCCCGTTATTTCCGC
CGCGACTTGTTTTTTCGTCTCGACAAAGTCTCTCTCTTGACGTGCCTCCC
TCTGGGACGCGGGCCGGGTGAAATCCGGTGACTGGAACGAGTGGAGACTA
CGCAGATACAGTACTTTTTATTTACCCCGGGAAGATGGATGCCACTTTTT
GGGTGTGTGGTTGAGTTCGGGCGGTGTGTTGTGTGTGTGTGGAGTGAGTG
AGTGGTAATGTGTCCCGAAGCATCTTGAATTGCCGTGTATGATGTACGAG
ATGAAAGCGACACCTTTCTTGCGGAGAGTCTTGTGTGTTCCTTGGTGAAG
GTGGTGGTTGTGTTGGGCAGGGGTTGGAGCGCCGATTTTTTTTTTGCGGC
TGGTGAACGAACCATGAACTGGTTGGTGTCCACGGCCTGGGATATATGGG
ATTGTGTCGGTGGAAAAATGAATGCTTTTCGATCGAGTCTGTGTTGGTGG
GTAACTGGAACGCGCGAGAGGACGTCGAGGGTGACGACAGATCGGAATAA
TGCTTTTTCTTTCCGCGGGACGAGAGGTTGCGTGATGCCGTGCGCCTGCC
TGCATGATTCCCCACGTATTCCTCCTTGGTGGTGGTTTGTCGTTTGTCGC
AGTGTGCATTTTTTTTTTTTCCTGTTTTGCTCGAAGGAAAAAGTTGGCGC
TTTACTGGCCTTGCCTGCAGGCGGTAGAGGCGGAGAATGGGGGCAGGCAA
GTGAGATATCATTATCCTTCAGTTGATTGCCCGCGGGAAGATGATTTCCA
CACATGTTTGCCCCGTGAGAGCTCCTCGATGTACTTACACCGGCGGATCA
ACATGCTTCGAGCATCCGAAGGGACGAAACGCTCTCAGGATTTACCCTTT
TACGTCGTACGT
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Coding sequence (CDS) from alignment at Scaffold_276:294931..298992-

>EsuBft955_7a-0001 ID=EsuBft955_7a-0001|Name=EsuBft955_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=816bp|location=Sequence derived from alignment at Scaffold_276:294931..298992- (Ectocarpus subulatus male Bft15b)
ATGGTCGTCCCCACTTTCCCGCCGGGGCCTTTGCAGGCGCAGCAGCAGCA
GATGGCGGCGGTAGCGGCGGCGGCGGCAGCAGCTACGGCGGCGGCGGCGG
GGGGCAACAACGCGATGAACCCGCACCACATGGCAGGCGTTGTGCCGCCG
CACGTGATGGCGGGGGCGCGGGGACCCATGCCGCCTCAGCAGTTCCCGCA
GCCCATGTATCGGGCGGCGATGGGACAGCCTCCGCAGATGTTCATGCAAC
CGCCTCGCATGCCGATGGCTCCGGGGCAGATCCAAGGCTTTCCGCCGCAG
GGGATTCAGGTCGTGGGCCAGCCAGGGGGGGCGGCGCCCCCCCCGGGATC
TCCCTTCTATCACGGCCAGATGCAGATGGCCCAGCAGCAGCAGCAGCAGC
AGCCGCAGCAGCAACCGGGACAGCCGCAGCTTCAGCTGCCGCCACCACAG
ATCCCGGTGCCGCAAGGCCAACAGCAGCAGCAGCAGCAGCAGCAGCCCCA
GCAGCAGCAACAGCAGCAGAGAGGTTTCCCAATGATGCCGGGACACCCCG
GGGCGGGCGGGGCTCCCCCGCCCTCCCACCCCGCCCCTCCCCAGACACCT
CCTCAGTCGCAGAGACCGGGGAACGCGGGCGGAATGGGCGGCATGCGGCC
CGGGGGCGCGGGGGGTCCGCACGAGCACGGGGGGGATGGACACGGCGACG
ACTCGGGAGGCGGCCACTCGCGAAGAGGGCGCGGAGGCGGCAGGGGGGGT
AGGGGGGGCTTGTCGAGACAAAACAGCGCCAACAGAAAACACAGGGGCGG
AAGCGGCGGTTCTTGA
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