EsuBft955_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft955_3a-0001
Unique Name	EsuBft955_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_276	contig	Scaffold_276:337828..340196 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D8LN28
ProteomeId	EsuBft955_3
Protein domains	PTHR19303
Protein domains	IPR004875
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Max annot lvl	2759\|Eukaryota
Length	111
Hectar predicted targeting category	other localisation
Evalue	1.09e-36
EggNOG OGs	2CZS4@1\|root,2SBGG@2759\|Eukaryota
Date last modified	2016-06-13
Date creation	2016-06-13
Description	DDE superfamily endonuclease
COG category	S

Cross References

External references for this mRNA


Database	Accession
GO	0003676

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft955_3a	EsuBft955_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_276 337828..340196 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_3a-0001-exon	EsuBft955_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_276 337828..338286 -
EsuBft955_3a-0001-exon	agat-exon-101583	Ectocarpus subulatus male Bft15b	exon	Scaffold_276 338950..339189 -
EsuBft955_3a-0001-exon	agat-exon-101584	Ectocarpus subulatus male Bft15b	exon	Scaffold_276 339786..340196 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_3a-0001-cds	EsuBft955_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_276 337828..338286 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft955_3a-0001	EsuBft955_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_276 337828..340196 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_276:337828..340196-
coding sequence from alignment at Scaffold_276:337828..340196-

spliced messenger RNA

>EsuBft955_3a-0001 ID=EsuBft955_3a-0001|Name=EsuBft955_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1110bp|location=Sequence derived from alignment at Scaffold_276:337828..340196- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCACCTTATCAACAACGCCGGCAACCAGACTGGAAGCGGCCAGAT
CGACCAGTTCGCCGGCGCCCTCCCCACGGTCCTCCCACACAGCCACAACG
CTAAGGATCAGTGGCGGAAGGCGACGAACACGATGCCCCCGAAAGCCCCC
AACCACCGTTGGGGTTCGACCTACGAGAGGAACAACCAGTTGGTGACGGG
CTGGCAGCCGGCCAAGAACTTCTTCGACGCCTTCAGCAGCAGCGACGAGA
CCAAGTCACGAAAGGCCGACTTCTGCCGGGGTGAGCTTGCCAGGCTCGGG
AAGGACGGGTACCACCAAAAGTTCTGGCTGCAGCTGGACTTCGCGGCCGC
GGTGGATATCGGGAAGCACCTCGTGAACGGGACGTTTGTGCTCGAGGGAG
ATGGCATGCTGGCCGTGGTGATCTCCACGTTCGAGGAAAACGTGCTCAAA
GACATGCTCCCCGTGCAGACGTACACCTGGGAGAGGGTCGGGGACCATCC
CAATGCGGAGCAACGCGAGAGTATCGCCCTCCTCCAGGCTGCGCGGCTCT
TCGACTTCCGCCATGTGGAGCAGCGTCAGTTGAATGTTGCTGACATCGAC
CTCCTCGATCGCTTCCCCTTCGTTTCCGAAGATGTCGTCGCGAGACTAAA
AAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGCGAACAGATCGATG
CACGCGGCTTGCAGGGCAAAGTTGCCCTTGTGCTGGACGGCCACGCCTCG
CACACGACCTTCGACGCCATCAGCTTTGCCATCCCTCTGGACATCGACCT
CTTCCAGCTCCCGTCCCACACGTCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAGCCTTCAAGAGAGAGCTGACGAGGGTGCTCGCGGCCTAC
CCACTGAAAATCGGGGGGAGGAGTTCGGTGAAGCGTGACATGGCTGGCGT
GATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATAGCATGGCGG
CGTTCAAAGGGGCGGGCTTGTGGCCGGTGAACATGGAGAAGGCCATCAAC
CGACTACACGGCAAGAGGAAGCAACGGGAGAATGACCGCCCTATNACATG
GCTGGCGTGA

protein sequence of EsuBft955_3a-0001

>EsuBft955_3 ID=EsuBft955_3|Name=EsuBft955_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=369bp
MSHLINNAGNQTGSGQIDQFAGALPTVLPHSHNAKDQWRKATNTMPPKAP
NHRWGSTYERNNQLVTGWQPAKNFFDAFSSSDETKSRKADFCRGELARLG
KDGYHQKFWLQLDFAAAVDIGKHLVNGTFVLEGDGMLAVVISTFEENVLK
DMLPVQTYTWERVGDHPNAEQRESIALLQAARLFDFRHVEQRQLNVADID
LLDRFPFVSEDVVARLKSHVFLDYLRDLREQIDARGLQGKVALVLDGHAS
HTTFDAISFAIPLDIDLFQLPSHTSHITQPLDVGTFGAFKRELTRVLAAY
PLKIGGRSSVKRDMAGVIAEAWRGSFTPANSMAAFKGAGLWPVNMEKAIN
RLHGKRKQRENDRPXTWLA

mRNA from alignment at Scaffold_276:337828..340196-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft955_3a-0001 ID=EsuBft955_3a-0001|Name=EsuBft955_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2369bp|location=Sequence derived from alignment at Scaffold_276:337828..340196- (Ectocarpus subulatus male Bft15b)
ATGTCCCACCTTATCAACAACGCCGGCAACCAGACTGGAAGCGGCCAGAT
CGACCAGTTCGCCGGCGCCCTCCCCACGGTCCTCCCACACAGCCACAACG
CTAAGGATCAGTGGCGGAAGGCGACGAACACGATGCCCCCGAAAGCCCCC
AACCACCGTTGGGGTTCGACCTACGAGAGGAACAACCAGTTGGTGACGGG
CTGGCAGCCGGCCAAGAACTTCTTCGACGCCTTCAGCAGCAGCGACGAGA
CCAAGTCACGAAAGGCCGACTTCTGCCGGGGTGAGCTTGCCAGGCTCGGG
AAGGACGGGTACCACCAAAAGTTCTGGCTGCAGCTGGACTTCGCGGCCGC
GGTGGATATCGGGAAGCACCTCGTGAACGGGACGTTTGTGCTCGAGGGAG
ATGGCATGCTGGTGAGATATGCTATTCGTTTTTTTTCTTTTATCCCCTCG
CCACTGCTGGCCCCGTAGAGTTTGTGTGATAGCCGTTGTTATTTTTGCTG
ATCCTGTGGTTCGGTTGCTAGCATTTTTGTATGATGTCCTGTAATATTTT
CCCTTCGGGCGACCCTTAACGCTTACCGCCTTCCACGGGTAATTTGCTTG
GCTGTTACCCGTTCTTCCTTGCCTCGTATTCCTTATCAGCTTCCTGTGGC
GTATGAAGTCATCCTCAGGGCGCGGGCGGGACTTGCCCTCACGCGAAAGG
CGGACGGCTCCTTTGGCAGGCCGCATCTCCCGAACGTCTATGCGCTCATC
CGAGAGTACAGCAAGGGCGACGCAAGTACATTGTGATTTGAAATAAAGGA
AACAAGTAATGTTTTTCGCGGGATGGATTTGTGGCACACAACGCTTGCAC
TGCTGCAATCTGCACGCGCTAAGCGCATAGACAGCAGTATTGATCAAAAA
TCAACTCCTGCCGGTTTACTCTTACTCCACTGCCCGTCTGCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNTTCTCGGAT
TGTGTAGGCCGTGGTGATCTCCACGTTCGAGGAAAACGTGCTCAAAGACA
TGCTCCCCGTGCAGACGTACACCTGGGAGAGGGTCGGGGACCATCCCAAT
GCGGAGCAACGCGAGAGTATCGCCCTCCTCCAGGCTGCGCGGCTCTTCGA
CTTCCGCCATGTGGAGCAGCGTCAGTTGAATGTTGCTGACATCGACCTCC
TCGATCGCTTCCCCTTCGTTTCCGAAGATGTCGTCGCGAGACTAAAAGTT
CAGATGGTTGACTATAATATCGCTGCCTCTGAAGTTGAGACCGGCTACGA
CTTGTGGGCATTCCGTTTCGGAAGATGTCGTCGCGAGACTAAAAGATCAG
ATGGTTGACTATAATATCGCTGCCTCTGAAGTTGACACCGGCTACGACTT
GTGGGCATTCCAACATCTTATCTTTTCGTCTCGCGACGACATCTTCCGAA
ACGAAGTGTTGCTGACATCGACCTCGTCGATCGCTTCCCCTTGGACGGTG
GTCGCCAGCATCGGCGCCGACGGCCACACCTGCAACCCTATCATCATCTA
CAAAGGCCAGCGTATGCAACCCGCTTGGATCCAGGACAAGAACGGCATTC
CCGATGCGAAGTACACTGTCACGGAGTAATCCTTCATCCAGAGCCACGTG
TTCCTCGACTACCTTCGAGACCTCCGCGNCAACATCTTATCTTTTCGTCT
CGCGACGACATCTTCCGAAACGAAGTGTTGCTGACATCGACCTCGTCGAT
CGCTTCCCCTTGGACGGTGGTCGCCAGCATCGGCGCCGACGGCCACACCT
GCAACCCTATCATCATCTACAAAGGCCAGCGTATGCAACCCGCTTGGATC
CAGGACAAGAACGGCATTCCCGATGCGAAGTACACTGTCACGGAGTAATC
CTTCATCCAGAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGCGAAC
AGATCGATGCACGCGGCTTGCAGGGCAAAGTTGCCCTTGTGCTGGACGGC
CACGCCTCGCACACGACCTTCGACGCCATCAGCTTTGCCATCCCTCTGGA
CATCGACCTCTTCCAGCTCCCGTCCCACACGTCGCACATCACCCAGCCCT
TGGACGTTGGTACGTTCGGAGCCTTCAAGAGAGAGCTGACGAGGGTGCTC
GCGGCCTACCCACTGAAAATCGGGGGGAGGAGTTCGGTGAAGCGTGACAT
GGCTGGCGTGATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATA
GCATGGCGGCGTTCAAAGGGGCGGGCTTGTGGCCGGTGAACATGGAGAAG
GCCATCAACCGACTACACGGCAAGAGGAAGCAACGGGAGAATGACCGCCC
TATNACATGGCTGGCGTGA

Coding sequence (CDS) from alignment at Scaffold_276:337828..340196-

>EsuBft955_3a-0001 ID=EsuBft955_3a-0001|Name=EsuBft955_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1110bp|location=Sequence derived from alignment at Scaffold_276:337828..340196- (Ectocarpus subulatus male Bft15b)
ATGTCCCACCTTATCAACAACGCCGGCAACCAGACTGGAAGCGGCCAGAT
CGACCAGTTCGCCGGCGCCCTCCCCACGGTCCTCCCACACAGCCACAACG
CTAAGGATCAGTGGCGGAAGGCGACGAACACGATGCCCCCGAAAGCCCCC
AACCACCGTTGGGGTTCGACCTACGAGAGGAACAACCAGTTGGTGACGGG
CTGGCAGCCGGCCAAGAACTTCTTCGACGCCTTCAGCAGCAGCGACGAGA
CCAAGTCACGAAAGGCCGACTTCTGCCGGGGTGAGCTTGCCAGGCTCGGG
AAGGACGGGTACCACCAAAAGTTCTGGCTGCAGCTGGACTTCGCGGCCGC
GGTGGATATCGGGAAGCACCTCGTGAACGGGACGTTTGTGCTCGAGGGAG
ATGGCATGCTGGCCGTGGTGATCTCCACGTTCGAGGAAAACGTGCTCAAA
GACATGCTCCCCGTGCAGACGTACACCTGGGAGAGGGTCGGGGACCATCC
CAATGCGGAGCAACGCGAGAGTATCGCCCTCCTCCAGGCTGCGCGGCTCT
TCGACTTCCGCCATGTGGAGCAGCGTCAGTTGAATGTTGCTGACATCGAC
CTCCTCGATCGCTTCCCCTTCGTTTCCGAAGATGTCGTCGCGAGACTAAA
AAGCCACGTGTTCCTCGACTACCTTCGAGACCTCCGCGAACAGATCGATG
CACGCGGCTTGCAGGGCAAAGTTGCCCTTGTGCTGGACGGCCACGCCTCG
CACACGACCTTCGACGCCATCAGCTTTGCCATCCCTCTGGACATCGACCT
CTTCCAGCTCCCGTCCCACACGTCGCACATCACCCAGCCCTTGGACGTTG
GTACGTTCGGAGCCTTCAAGAGAGAGCTGACGAGGGTGCTCGCGGCCTAC
CCACTGAAAATCGGGGGGAGGAGTTCGGTGAAGCGTGACATGGCTGGCGT
GATTGCGGAGGCATGGAGAGGGAGCTTCACGCCTGCGAATAGCATGGCGG
CGTTCAAAGGGGCGGGCTTGTGGCCGGTGAACATGGAGAAGGCCATCAAC
CGACTACACGGCAAGAGGAAGCAACGGGAGAATGACCGCCCTATNACATG
GCTGGCGTGA