Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft954_10 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 258 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_004510.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2582bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACTTGCGCACTGCACGCACATCCACCTGCCACACCGCACTTTCACA
TCTCCCATCAAGACACCAACCAAATCATCACGGAACCAAACTAAACCAAA
CCTGGCTACAAACTGGACAACACAAGGAAGCCAAGTATCTAGGTGTGTCA
TCTGTCCCGAACGTCGAACGTCAGGTTGAACTTGTCGGCGGCTTATTTTC
TGGCCAACAGGAACGGCGAACGTCAACCACACGCAACTCAGCTGTGCACT
GTCGCTACTACTGCTGTGGTACCACCAACAGCAGCGAACGAAGCAGCAAC
AGCAGCGGCACCTTCCCACGCGAGGAACGTCACAGCTAGGCACATGTCTT
CTCCGTCATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCACGCCTCC
CACAACAACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGATCCCGAA
CCACGAGAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCCGGCGCCG
GTGCCGGCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGCCGCCCTG
TCGGAAGCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCCCCCGCGG
CCGCGACGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGCTTCGTGG
CGTGGCCCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGACCCCCGC
TACGTGCAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGGTCAAGAT
CATCACCACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCGCGGAAGA
AGACGGACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTCGTCTTCG
TCTTTGATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCCCGCCCAC
GCCGTCACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGGCCGGAGG
ACCTTATCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCAGGCCGAC
GTCTACTCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGCTGGCCGT
CCGGGCGAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTGGACTACT
GCCGGCGGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGCACAGAAC
GGCGGGCTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCTGGAGGGA
GGAGACGTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATCGTCGTGG
AGGGGGGAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAGAGCGGCG
CGAAGGAGGATGGAGGACGCGGAATCGGACTGAAAAAATGAAAAAAAGGA
AAGCCGGCCCTGCCGGCGTTGGTGCTCAAGCGGGGACGGGCGGAGCTGAA
TTATCGCCTCGTGTGTTGCGGTGGGAAAACGTGTTGTTGTATGAAATAGT
AAAACATGGATTATCCACTGCTTGTAGATATACATGGGTTGATTTCCACA
CCGGTGATGATGCCCACACGATGATGAACGCAAGAGAGAGAGATGATTGA
TTTGGAGATGCCGCGATAGAGCTTGTTGCCCGTTGGCGGCGGTTACACAC
CACGGGGAGGAGGGTGCGTGGGACTTCGACGCACTGAAAAAATATTCGAA
TATGCGTTGAGAAGGCTAGTAGGGCCGACGACGTTTGGTTTCTCTCAGGT
TGGCGTTTCTGTGTGAAGTGAACCCGCCGGGTGGGCTTGCAGCGTCGGAG
GCTCTGTTGCCCCCCATGGCGGCGCAGTAAGCGCGTGTGAGTATGCGTAC
ATGCCCGTCGCAGCGTATTGAGAAAAATTCGCAAAAGGCGGCCCTCGCCG
AATCGTCGGTGTTGTGTCTCCGCGAGAACCGGTGGGAGTTCTCGTGTTTT
TTTGTGTGGTGTAGAGTGTACGTGTGCATGCTCAGAAATATCATGCGTGT
TTGTCCATCGCCAAATGGACGGTTCAAAACGCAGTCACTGCATTACTAGA
GTTTTTTTTATCGTGTATCAGGTGTTTCGTTCTAGTGCCTTGCATCGTTG
ACTTTGGGGTGGGTCGGGGGGGGGCAATTTTGAGTAAAATGTATCGTTTC
AAATCAAACACAAACACGATGATGCTTAAGTCCATGGCTTTAATGTCAAA
TGACAAATACAACCGTGGTTTTGAAGCCATCCGAAGGTGTTGATTTACAT
GCCGGGGGCGAGCTTGTTCATCGGTGCGTAGTGGGCACGTACTGTACCAC
TTGTTTTTATGTTTGGTCGACTTGCTCATAACCGGCGCGATGGTATAGAA
AGTGAAGACGAGTGAGGTCTGTGTGATTGGTTGGGTAGAAACAGCTGCCT
CGGTATGTAGATGACACGAGGGCTGTTAGACGTTGGTGTTACGATACGTC
ACGGATAGAGGGTAATCGTGTTTACTCGGAGTGGAGAGTGAACAACAAAG
ATCTTGACAAAAACTTTAATTTTTCATCGCATGATGTGGGAGACAGCGGA
TGATGTGCGTCAAACATGTACGAAACGGTGTAGACTGCTGCCGCCAAATA
AAAGATGGGACGAACAAAATAAAAAAAATGGC back to topprotein sequence of EsuBft954_10a-0001 >EsuBft954_10 ID=EsuBft954_10|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=329bp
MSSPSCLTRRQRSYASHASHNNPHSLEPFSAALIPNHERGTLQTFQGAGA
GAGAGGPRGRRRGSPFAALSEAYKPARAPVFSRPRGRDGGEVLGLRSSCS
FVAWPRPGGGDQLLPADPRYVQKKKPQRQAGAEVKIITTTAAKKPVLLLP
RKKTDENAVLERWVSSSSSSLMAEAASTAATTPPPTPSPPSRSHRKSVSW
PEDLIRSVHRFPAAASQADVYSPDLQAVEIAKELAVRARNPELRRAALQV
DYCRRHAAQVVRSLTSAQNGGLDGVEEACRLYGWREETFLREMDELVRSI
VVEGGEREVWLLKSSFRAARRRMEDAESD back to topmRNA from alignment at Scaffold_235:198102..201277+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3176bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)
ATGCACTTGCGCACTGCACGCACATCCACCTGCCACACCGCACTTTCACA
TCTCCCATCAAGACACCAACCAAATCATCACGGAACCAAACTAAACCAAA
CCTGGCTACAAACTGGACAACACAAGGAAGCCAAGTATCTAGGTGAGCCC
CCGACAGGAAGGCGAGCCTCTCCTGGCCATGACGGCGGTGGGAGTGGTGA
ACGGTGTGCAGCGTGGACAGAGCGTCGGATAATTTTCGCGGCCCGTTTTT
CTCTCTGTTTGAAAATTGAAAATGCATGACGTTCACCCGCACGAACGACC
CCTGGTTGTGGCGGCGCTGTGCGTCACCTCGTGCTTTCCCGAACTCCCAT
GCCGCCTTTCCGGACCTGCATGTCATGTCGTCGTTGTGGCTTGTTACAGC
TCCTGCTCCCTGTCTCACGCTTTCTGAAATATCAACGTATCGCGCTGCAT
AGCCTACACCTCACACCGGGTCAAATCGGCGGGGTGTTTTTCTTGTTGGA
TTACTTACGCACACGGATTGGTGGATTTCGAACCTTCGAACAGTCTACGT
CCCAAACCCTGTCATCGATGTCATGCTCTTTTTCGGTGAACGTTTTCCGC
GAAACCTGCGTCTGAGTGTCCCCGTCATCTCGCTTCGAGTATCTCACGCG
GCTCTTCTCCTCCCTCTCCATCCCTACCACCGCCCCGCGCCTGCTTGCCC
CGCGGCCGGCATGGTGTGCTGTCTTTCTTCCAGCAGGTGTGTCATCTGTC
CCGAACGTCGAACGTCAGGTTGAACTTGTCGGCGGCTTATTTTCTGGCCA
ACAGGAACGGCGAACGTCAACCACACGCAACTCAGCTGTGCACTGTCGCT
ACTACTGCTGTGGTACCACCAACAGCAGCGAACGAAGCAGCAACAGCAGC
GGCACCTTCCCACGCGAGGAACGTCACAGCTAGGCACATGTCTTCTCCGT
CATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCACGCCTCCCACAAC
AACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGATCCCGAACCACGA
GAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCCGGCGCCGGTGCCG
GCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGCCGCCCTGTCGGAA
GCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCCCCCGCGGCCGCGA
CGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGCTTCGTGGCGTGGC
CCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGACCCCCGCTACGTG
CAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGGTCAAGATCATCAC
CACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCGCGGAAGAAGACGG
ACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTCGTCTTCGTCTTTG
ATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCCCGCCCACGCCGTC
ACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGGCCGGAGGACCTTA
TCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCAGGCCGACGTCTAC
TCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGCTGGCCGTCCGGGC
GAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTGGACTACTGCCGGC
GGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGCACAGAACGGCGGG
CTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCTGGAGGGAGGAGAC
GTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATCGTCGTGGAGGGGG
GAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAGAGCGGCGCGAAGG
AGGATGGAGGACGCGGAATCGGACTGAAAAAATGAAAAAAAGGAAAGCCG
GCCCTGCCGGCGTTGGTGCTCAAGCGGGGACGGGCGGAGCTGAATTATCG
CCTCGTGTGTTGCGGTGGGAAAACGTGTTGTTGTATGAAATAGTAAAACA
TGGATTATCCACTGCTTGTAGATATACATGGGTTGATTTCCACACCGGTG
ATGATGCCCACACGATGATGAACGCAAGAGAGAGAGATGATTGATTTGGA
GATGCCGCGATAGAGCTTGTTGCCCGTTGGCGGCGGTTACACACCACGGG
GAGGAGGGTGCGTGGGACTTCGACGCACTGAAAAAATATTCGAATATGCG
TTGAGAAGGCTAGTAGGGCCGACGACGTTTGGTTTCTCTCAGGTTGGCGT
TTCTGTGTGAAGTGAACCCGCCGGGTGGGCTTGCAGCGTCGGAGGCTCTG
TTGCCCCCCATGGCGGCGCAGTAAGCGCGTGTGAGTATGCGTACATGCCC
GTCGCAGCGTATTGAGAAAAATTCGCAAAAGGCGGCCCTCGCCGAATCGT
CGGTGTTGTGTCTCCGCGAGAACCGGTGGGAGTTCTCGTGTTTTTTTGTG
TGGTGTAGAGTGTACGTGTGCATGCTCAGAAATATCATGCGTGTTTGTCC
ATCGCCAAATGGACGGTTCAAAACGCAGTCACTGCATTACTAGAGTTTTT
TTTATCGTGTATCAGGTGTTTCGTTCTAGTGCCTTGCATCGTTGACTTTG
GGGTGGGTCGGGGGGGGGCAATTTTGAGTAAAATGTATCGTTTCAAATCA
AACACAAACACGATGATGCTTAAGTCCATGGCTTTAATGTCAAATGACAA
ATACAACCGTGGTTTTGAAGCCATCCGAAGGTGTTGATTTACATGCCGGG
GGCGAGCTTGTTCATCGGTGCGTAGTGGGCACGTACTGTACCACTTGTTT
TTATGTTTGGTCGACTTGCTCATAACCGGCGCGATGGTATAGAAAGTGAA
GACGAGTGAGGTCTGTGTGATTGGTTGGGTAGAAACAGCTGCCTCGGTAT
GTAGATGACACGAGGGCTGTTAGACGTTGGTGTTACGATACGTCACGGAT
AGAGGGTAATCGTGTTTACTCGGAGTGGAGAGTGAACAACAAAGATCTTG
ACAAAAACTTTAATTTTTCATCGCATGATGTGGGAGACAGCGGATGATGT
GCGTCAAACATGTACGAAACGGTGTAGACTGCTGCCGCCAAATAAAAGAT
GGGACGAACAAAATAAAAAAAATGGC back to topCoding sequence (CDS) from alignment at Scaffold_235:198102..201277+ >EsuBft954_10a-0001 ID=EsuBft954_10a-0001|Name=EsuBft954_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=990bp|location=Sequence derived from alignment at Scaffold_235:198102..201277+ (Ectocarpus subulatus male Bft15b)
ATGTCTTCTCCGTCATGCCTTACGAGAAGGCAGCGGTCCTACGCCAGCCA
CGCCTCCCACAACAACCCGCACAGCCTGGAGCCCTTTTCCGCCGCCCTGA
TCCCGAACCACGAGAGGGGAACTCTGCAAACCTTCCAAGGCGCCGGCGCC
GGCGCCGGTGCCGGCGGGCCGCGCGGTCGCCGACGAGGCTCCCCGTTCGC
CGCCCTGTCGGAAGCATACAAGCCGGCGAGGGCGCCCGTCTTCTCGCGCC
CCCGCGGCCGCGACGGCGGCGAGGTTCTCGGGCTTCGTTCGTCCTGCAGC
TTCGTGGCGTGGCCCAGGCCCGGCGGCGGAGACCAGCTGCTGCCCGCCGA
CCCCCGCTACGTGCAGAAGAAAAAGCCGCAGCGGCAGGCGGGGGCGGAGG
TCAAGATCATCACCACGACCGCGGCGAAGAAACCCGTCCTGCTGCTGCCG
CGGAAGAAGACGGACGAGAACGCGGTGCTGGAGCGATGGGTCTCCTCGTC
GTCTTCGTCTTTGATGGCGGAGGCAGCATCGACGGCGGCCACTACCCCCC
CGCCCACGCCGTCACCGCCCTCCCGGTCCCACCGCAAGAGTGTGTCGTGG
CCGGAGGACCTTATCCGCTCCGTCCACCGCTTTCCGGCCGCCGCGTCTCA
GGCCGACGTCTACTCCCCGGACCTGCAGGCCGTCGAGATCGCCAAGGAGC
TGGCCGTCCGGGCGAGGAACCCGGAGCTGCGGCGGGCGGCCCTGCAGGTG
GACTACTGCCGGCGGCACGCCGCGCAGGTCGTGCGGTCCCTGACCTCGGC
ACAGAACGGCGGGCTCGACGGGGTGGAGGAGGCGTGCCGGCTGTACGGCT
GGAGGGAGGAGACGTTCCTGCGCGAGATGGACGAGCTCGTGCGGTCCATC
GTCGTGGAGGGGGGAGAGAGGGAGGTGTGGCTACTCAAGTCGAGCTTCAG
AGCGGCGCGAAGGAGGATGGAGGACGCGGAATCGGACTGA back to top
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