EsuBft953_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft953_8a-0001
Unique NameEsuBft953_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_150contigScaffold_150:101656..102510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft953_8
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length85
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft953_8aEsuBft953_8aEctocarpus subulatus male Bft15bgeneScaffold_150 101656..102510 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft953_8a-0001-exonEsuBft953_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_150 101656..102510 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft953_8a-0001-exonagat-three_prime_utr-23439Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_150 101656..101751 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft953_8a-0001-cdsEsuBft953_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_150 101752..102510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft953_8a-0001EsuBft953_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_150 101752..102510 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft953_8a-0001 ID=EsuBft953_8a-0001|Name=EsuBft953_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=855bp|location=Sequence derived from alignment at Scaffold_150:101656..102510- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACACAGACGGCGCCGGCCGACTGGCGCCAGCAGTCTACGGAAAC
GTTTCTCGCGTCCATGGACAGCATGGGGTATAACAACGCGCTGCATCACT
TGGAAGGCACCGGCTCAAAGTTTGCGAAGGAGACGCGTGTTCTCTTGCGA
GAGTTGGAAGCCAAGGTCAGCGCAGCGGTCTCGTTAGAGCGAGCAATCGA
GCAAGCGCAAAAGCAACGTAGCACCAAGGAGGGTAGCCGCACGTTCCAAA
TGATCCTCACCGCTGCGGCGTTTCCCGTGGACGACGTAGACGAGGCTCCA
TCGGTGTCAGCAAGACGTAGGGCAGCGGCGCTGGGGGTTCGCGAGCAAGC
CTTCAACTTTGCGGCGGAGCGTGCCAAGAAGTTGCTGTCCGATCTCCAAC
CAACCGAGGAGATAAAGCGCGGTGTCTACTGGTTTTGGCCCCGAGCTAAG
CAAAGCAATGCCGCCAGCGAAGAGCTGCTGGAGTTGATGAGACAGTACTG
GCACACGGACGAGGTGTTACGCCAGCATGGCAACTCAGCTGAGCGCGACA
TGTGGAAGGAAAGCAAGTCTCCTACAGCTCACCGCCACCCTCGGCGGCAG
CTTACGGAGCGGGGTGGGGGCGAGGCGGTGTACGCCAAGTTCCTCAACTG
GGCGTCCTACAAGAGCTTTAAGGAGCGACAGAGCGACAACTTCACGGACC
CTGGCCGTACGCTCTTCCTCTCGACGCGTTGCAAGTGCCTGGTCCTCCCT
GCAATGTAGCAGTGCGTGTGCAAGATCCACTCGCAGCAGGTGCTATACAT
CGAGGCGCTAGCCAATGTCGACATGACCAGCCACGGGGAATGCGGTTGTC
GATGG
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protein sequence of EsuBft953_8a-0001

>EsuBft953_8 ID=EsuBft953_8|Name=EsuBft953_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MCTQTAPADWRQQSTETFLASMDSMGYNNALHHLEGTGSKFAKETRVLLR
ELEAKVSAAVSLERAIEQAQKQRSTKEGSRTFQMILTAAAFPVDDVDEAP
SVSARRRAAALGVREQAFNFAAERAKKLLSDLQPTEEIKRGVYWFWPRAK
QSNAASEELLELMRQYWHTDEVLRQHGNSAERDMWKESKSPTAHRHPRRQ
LTERGGGEAVYAKFLNWASYKSFKERQSDNFTDPGRTLFLSTRCKCLVLP
AM
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mRNA from alignment at Scaffold_150:101656..102510-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft953_8a-0001 ID=EsuBft953_8a-0001|Name=EsuBft953_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=855bp|location=Sequence derived from alignment at Scaffold_150:101656..102510- (Ectocarpus subulatus male Bft15b)
ATGTGCACACAGACGGCGCCGGCCGACTGGCGCCAGCAGTCTACGGAAAC
GTTTCTCGCGTCCATGGACAGCATGGGGTATAACAACGCGCTGCATCACT
TGGAAGGCACCGGCTCAAAGTTTGCGAAGGAGACGCGTGTTCTCTTGCGA
GAGTTGGAAGCCAAGGTCAGCGCAGCGGTCTCGTTAGAGCGAGCAATCGA
GCAAGCGCAAAAGCAACGTAGCACCAAGGAGGGTAGCCGCACGTTCCAAA
TGATCCTCACCGCTGCGGCGTTTCCCGTGGACGACGTAGACGAGGCTCCA
TCGGTGTCAGCAAGACGTAGGGCAGCGGCGCTGGGGGTTCGCGAGCAAGC
CTTCAACTTTGCGGCGGAGCGTGCCAAGAAGTTGCTGTCCGATCTCCAAC
CAACCGAGGAGATAAAGCGCGGTGTCTACTGGTTTTGGCCCCGAGCTAAG
CAAAGCAATGCCGCCAGCGAAGAGCTGCTGGAGTTGATGAGACAGTACTG
GCACACGGACGAGGTGTTACGCCAGCATGGCAACTCAGCTGAGCGCGACA
TGTGGAAGGAAAGCAAGTCTCCTACAGCTCACCGCCACCCTCGGCGGCAG
CTTACGGAGCGGGGTGGGGGCGAGGCGGTGTACGCCAAGTTCCTCAACTG
GGCGTCCTACAAGAGCTTTAAGGAGCGACAGAGCGACAACTTCACGGACC
CTGGCCGTACGCTCTTCCTCTCGACGCGTTGCAAGTGCCTGGTCCTCCCT
GCAATGTAGCAGTGCGTGTGCAAGATCCACTCGCAGCAGGTGCTATACAT
CGAGGCGCTAGCCAATGTCGACATGACCAGCCACGGGGAATGCGGTTGTC
GATGG
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Coding sequence (CDS) from alignment at Scaffold_150:101656..102510-

>EsuBft953_8a-0001 ID=EsuBft953_8a-0001|Name=EsuBft953_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_150:101656..102510- (Ectocarpus subulatus male Bft15b)
ATGTGCACACAGACGGCGCCGGCCGACTGGCGCCAGCAGTCTACGGAAAC
GTTTCTCGCGTCCATGGACAGCATGGGGTATAACAACGCGCTGCATCACT
TGGAAGGCACCGGCTCAAAGTTTGCGAAGGAGACGCGTGTTCTCTTGCGA
GAGTTGGAAGCCAAGGTCAGCGCAGCGGTCTCGTTAGAGCGAGCAATCGA
GCAAGCGCAAAAGCAACGTAGCACCAAGGAGGGTAGCCGCACGTTCCAAA
TGATCCTCACCGCTGCGGCGTTTCCCGTGGACGACGTAGACGAGGCTCCA
TCGGTGTCAGCAAGACGTAGGGCAGCGGCGCTGGGGGTTCGCGAGCAAGC
CTTCAACTTTGCGGCGGAGCGTGCCAAGAAGTTGCTGTCCGATCTCCAAC
CAACCGAGGAGATAAAGCGCGGTGTCTACTGGTTTTGGCCCCGAGCTAAG
CAAAGCAATGCCGCCAGCGAAGAGCTGCTGGAGTTGATGAGACAGTACTG
GCACACGGACGAGGTGTTACGCCAGCATGGCAACTCAGCTGAGCGCGACA
TGTGGAAGGAAAGCAAGTCTCCTACAGCTCACCGCCACCCTCGGCGGCAG
CTTACGGAGCGGGGTGGGGGCGAGGCGGTGTACGCCAAGTTCCTCAACTG
GGCGTCCTACAAGAGCTTTAAGGAGCGACAGAGCGACAACTTCACGGACC
CTGGCCGTACGCTCTTCCTCTCGACGCGTTGCAAGTGCCTGGTCCTCCCT
GCAATGTAG
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