EsuBft952_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft952_5a-0001
Unique NameEsuBft952_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_176contigScaffold_176:35119..35333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft952_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length21
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft952_5aEsuBft952_5aEctocarpus subulatus male Bft15bgeneScaffold_176 35119..35333 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft952_5a-0001-exonEsuBft952_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_176 35119..35333 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft952_5a-0001-exonagat-five_prime_utr-15251Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_176 35119..35135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft952_5a-0001-cdsEsuBft952_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_176 35136..35333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft952_5a-0001EsuBft952_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_176 35136..35333 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft952_5a-0001 ID=EsuBft952_5a-0001|Name=EsuBft952_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=215bp|location=Sequence derived from alignment at Scaffold_176:35119..35333+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GCGAGGAACCGACTGGGATGGACAGCAATGAGAGCGTGTACGAAGCGGAG
CGGATCGAGTTTGGTCATGCTAGGATTGGCCACAGCGGCACCGGAGCAGC
GGCACCGGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCAGGCGGACGGC
ATCGAAACGTGGCGCACCGACAAACATCTCTTGTGTTGTCAAATATTTTC
CCGTTTATTTCCTGA
back to top

protein sequence of EsuBft952_5a-0001

>EsuBft952_5 ID=EsuBft952_5|Name=EsuBft952_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=65bp
MDSNESVYEAERIEFGHARIGHSGTGAAAPEQRHRSSGTGAGGRHRNVAH
RQTSLVLSNIFPFIS
back to top

mRNA from alignment at Scaffold_176:35119..35333+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft952_5a-0001 ID=EsuBft952_5a-0001|Name=EsuBft952_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=215bp|location=Sequence derived from alignment at Scaffold_176:35119..35333+ (Ectocarpus subulatus male Bft15b)
GCGAGGAACCGACTGGGATGGACAGCAATGAGAGCGTGTACGAAGCGGAG
CGGATCGAGTTTGGTCATGCTAGGATTGGCCACAGCGGCACCGGAGCAGC
GGCACCGGAGCAGCGGCACCGGAGCAGCGGAACCGGAGCAGGCGGACGGC
ATCGAAACGTGGCGCACCGACAAACATCTCTTGTGTTGTCAAATATTTTC
CCGTTTATTTCCTGA
back to top

Coding sequence (CDS) from alignment at Scaffold_176:35119..35333+

>EsuBft952_5a-0001 ID=EsuBft952_5a-0001|Name=EsuBft952_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=198bp|location=Sequence derived from alignment at Scaffold_176:35119..35333+ (Ectocarpus subulatus male Bft15b)
ATGGACAGCAATGAGAGCGTGTACGAAGCGGAGCGGATCGAGTTTGGTCA
TGCTAGGATTGGCCACAGCGGCACCGGAGCAGCGGCACCGGAGCAGCGGC
ACCGGAGCAGCGGAACCGGAGCAGGCGGACGGCATCGAAACGTGGCGCAC
CGACAAACATCTCTTGTGTTGTCAAATATTTTCCCGTTTATTTCCTGA
back to top