EsuBft952_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft952_3a-0001
Unique Name	EsuBft952_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_176	contig	Scaffold_176:22142..23339 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft952_3
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	113
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft952_3a	EsuBft952_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_176 22142..23339 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_3a-0001-exon	EsuBft952_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 22142..23171 +
EsuBft952_3a-0001-exon	agat-exon-54994	Ectocarpus subulatus male Bft15b	exon	Scaffold_176 23232..23339 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_3a-0001-exon	agat-five_prime_utr-15249	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_176 22142..22163 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_3a-0001-cds	EsuBft952_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_176 22164..23171 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft952_3a-0001	EsuBft952_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_176 22164..23339 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_176:22142..23339+
coding sequence from alignment at Scaffold_176:22142..23339+

spliced messenger RNA

>EsuBft952_3a-0001 ID=EsuBft952_3a-0001|Name=EsuBft952_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1138bp|location=Sequence derived from alignment at Scaffold_176:22142..23339+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTACCGCACCAACAACGACCATGATGGTGGCCCTTGTACATCACAGCC
CCGACAACCGTGGGGAGCACGAAACAGACGCTTGGATTTTTTTGTCCAGC
GATCCGAACCATGACTTCGACTTCCATCACGCAGCGATGGAGGTCGTTGT
TGCGCACTACACGACGGGACCGAAGTCTGCGGCCACCGCTGGGAGTGCGG
CCCCACGAGTGCACATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGG
AAGCGGAACTTTCGAGCAGTGGCGCAGAGCCTGAGGAGGCTTGGTGTCCG
CATTTTGCACAACTTCGCCGTCACTTCTCACTTCAAGGGCACGCATGATG
GCATCGGGGCGCTCATGAAGCGCCTACTTCGGAACGCGGAGATGCATGGC
ACGCGTATCCCCGACGTCGACGTCGCGCACGAGTTTCTTCTAGGCTACGC
CGTGGAGGCGGACAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTT
ACCGGATCAAGAGCTTCGAGGTCAGGAAGTTTGGCCCCAAGGAAATTCCT
CGCCCACCGATAGATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTT
TTTCACGGGAACAGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTC
TTGTGTGGGCTACTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGA
GCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTC
CAGGGCAAGGAAATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGT
TGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGC
TACGGTGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGT
GATGGAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTC
AATTGACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTG
GCGCCTACGCTTGACGAGAGCATGGGGGAGGAGGAGGAGGAGGAGGGGGA
GGAGGAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCAAGAGGTCGCG
TAAGTATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG

protein sequence of EsuBft952_3a-0001

>EsuBft952_3 ID=EsuBft952_3|Name=EsuBft952_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=371bp
MMVALVHHSPDNRGEHETDAWIFLSSDPNHDFDFHHAAMEVVVAHYTTGP
KSAATAGSAAPRVHMFTDGCGKQYKGKRNFRAVAQSLRRLGVRILHNFAV
TSHFKGTHDGIGALMKRLLRNAEMHGTRIPDVDVAHEFLLGYAVEADKAR
EGHFTTWSPYRIKSFEVRKFGPKEIPRPPIDLTGIPGSSKLYFFTGTEDE
QEDVQDTFSLVWATSVGVQTDDFVVGAAGDKVLTARKWVVDESRARKWAA
PKKFTRSWKLRVRGASCYCSTCRIGCYGDCMVAKVYPDLVGEVMEKSGKE
MVGRRTLGTQLTGVILPVISSDESPVAPTLDESMGEEEEEEGEEEGEREE
AQYVSSRGRVSIAKKRFPEVG

mRNA from alignment at Scaffold_176:22142..23339+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft952_3a-0001 ID=EsuBft952_3a-0001|Name=EsuBft952_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1198bp|location=Sequence derived from alignment at Scaffold_176:22142..23339+ (Ectocarpus subulatus male Bft15b)
TGCTACCGCACCAACAACGACCATGATGGTGGCCCTTGTACATCACAGCC
CCGACAACCGTGGGGAGCACGAAACAGACGCTTGGATTTTTTTGTCCAGC
GATCCGAACCATGACTTCGACTTCCATCACGCAGCGATGGAGGTCGTTGT
TGCGCACTACACGACGGGACCGAAGTCTGCGGCCACCGCTGGGAGTGCGG
CCCCACGAGTGCACATGTTTACGGACGGGTGCGGCAAGCAGTACAAGGGG
AAGCGGAACTTTCGAGCAGTGGCGCAGAGCCTGAGGAGGCTTGGTGTCCG
CATTTTGCACAACTTCGCCGTCACTTCTCACTTCAAGGGCACGCATGATG
GCATCGGGGCGCTCATGAAGCGCCTACTTCGGAACGCGGAGATGCATGGC
ACGCGTATCCCCGACGTCGACGTCGCGCACGAGTTTCTTCTAGGCTACGC
CGTGGAGGCGGACAAGGCGCGTGAAGGCCACTTCACAACCTGGTCCCCTT
ACCGGATCAAGAGCTTCGAGGTCAGGAAGTTTGGCCCCAAGGAAATTCCT
CGCCCACCGATAGATCTGACGGGGATCCCTGGAAGTTCCAAGCTGTACTT
TTTCACGGGAACAGAGGACGAGCAGGAGGACGTGCAGGATACCTTTAGTC
TTGTGTGGGCTACTAGTGTGGGGGTGCAGACAGACGATTTTGTGGTGGGA
GCGGCCGGAGACAAGGTGTTGACGGCTAGGAAGTGGGTGGTAGACGAGTC
CAGGGCAAGGAAATGGGCCGCCCCCAAGAAGTTCACCAGATCTTGGAAGT
TGCGGGTTCGGGGCGCATCGTGCTACTGCTCGACTTGCCGAATAGGCTGC
TACGGTGACTGCATGGTAGCGAAGGTGTACCCCGACTTGGTTGGCGAGGT
GATGGAGAAGTCGGGAAAAGAGATGGTTGGGAGACGCACGCTTGGGACTC
AATTGACCGGCGTTATTCTTCCGGTCATATCTTCGGACGAGTCCCCAGTG
GCGCCTACGCTTGACGAGAGCATGGGGGAGGTGGGTGGGGGAGGGGAGAA
GGAAGATGAGGGAGAGGAGGAGGACGATGAGGGGGAGGAGGAGGAGGAGG
AGGAGGGGGAGGAGGAGGGGGAGCGGGAGGAAGCGCAATACGTAAGCTCA
AGAGGTCGCGTAAGTATCGCGAAGAAGAGGTTCCCGGAGGTGGGCTAG

Coding sequence (CDS) from alignment at Scaffold_176:22142..23339+

>EsuBft952_3a-0001 ID=EsuBft952_3a-0001|Name=EsuBft952_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1116bp|location=Sequence derived from alignment at Scaffold_176:22142..23339+ (Ectocarpus subulatus male Bft15b)
ATGATGGTGGCCCTTGTACATCACAGCCCCGACAACCGTGGGGAGCACGA
AACAGACGCTTGGATTTTTTTGTCCAGCGATCCGAACCATGACTTCGACT
TCCATCACGCAGCGATGGAGGTCGTTGTTGCGCACTACACGACGGGACCG
AAGTCTGCGGCCACCGCTGGGAGTGCGGCCCCACGAGTGCACATGTTTAC
GGACGGGTGCGGCAAGCAGTACAAGGGGAAGCGGAACTTTCGAGCAGTGG
CGCAGAGCCTGAGGAGGCTTGGTGTCCGCATTTTGCACAACTTCGCCGTC
ACTTCTCACTTCAAGGGCACGCATGATGGCATCGGGGCGCTCATGAAGCG
CCTACTTCGGAACGCGGAGATGCATGGCACGCGTATCCCCGACGTCGACG
TCGCGCACGAGTTTCTTCTAGGCTACGCCGTGGAGGCGGACAAGGCGCGT
GAAGGCCACTTCACAACCTGGTCCCCTTACCGGATCAAGAGCTTCGAGGT
CAGGAAGTTTGGCCCCAAGGAAATTCCTCGCCCACCGATAGATCTGACGG
GGATCCCTGGAAGTTCCAAGCTGTACTTTTTCACGGGAACAGAGGACGAG
CAGGAGGACGTGCAGGATACCTTTAGTCTTGTGTGGGCTACTAGTGTGGG
GGTGCAGACAGACGATTTTGTGGTGGGAGCGGCCGGAGACAAGGTGTTGA
CGGCTAGGAAGTGGGTGGTAGACGAGTCCAGGGCAAGGAAATGGGCCGCC
CCCAAGAAGTTCACCAGATCTTGGAAGTTGCGGGTTCGGGGCGCATCGTG
CTACTGCTCGACTTGCCGAATAGGCTGCTACGGTGACTGCATGGTAGCGA
AGGTGTACCCCGACTTGGTTGGCGAGGTGATGGAGAAGTCGGGAAAAGAG
ATGGTTGGGAGACGCACGCTTGGGACTCAATTGACCGGCGTTATTCTTCC
GGTCATATCTTCGGACGAGTCCCCAGTGGCGCCTACGCTTGACGAGAGCA
TGGGGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGGGGAGCGGGAGGAA
GCGCAATACGTAAGCTCAAGAGGTCGCGTAAGTATCGCGAAGAAGAGGTT
CCCGGAGGTGGGCTAG