EsuBft951_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft951_2a-0001
Unique Name	EsuBft951_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_97	contig	Scaffold_97:97800..99159 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G6Q2
ProteomeId	EsuBft951_2
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	136
Hectar predicted targeting category	signal anchor
Evalue	4.38e-08
EggNOG OGs	2AWDH@1\|root,2RZYI@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15
Description	DDE superfamily endonuclease
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a	EsuBft951_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_97 97800..99159 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a-0001-exon	EsuBft951_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_97 97800..99159 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a-0001-exon	agat-five_prime_utr-15238	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_97 97800..98069 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a-0001-cds	EsuBft951_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_97 98070..98300 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a-0001-exon	agat-three_prime_utr-23418	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_97 98301..99159 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft951_2a-0001	EsuBft951_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_97 98070..98300 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_97:97800..99159+
coding sequence from alignment at Scaffold_97:97800..99159+

spliced messenger RNA

>EsuBft951_2a-0001 ID=EsuBft951_2a-0001|Name=EsuBft951_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1360bp|location=Sequence derived from alignment at Scaffold_97:97800..99159+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGGGTTCCTACGTTAAATTGACACGAAAGTTTTTGACTGAGATAGATTGA
CACCAAAAAAAGTGACGGTTGGCAAATTGACACGAAAAAAGGTAACGGTT
GGTAAACTGACACGAAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGCC
AGCAGCCAGCAGCGGTGCAGCCTCAAGTAAAAAAAAAATCAACCCCAGCT
GCACCGCTGCACCGCCGGGAAACCCAACGGTCGCGCTCCCTCATCACCGC
ACCCGACACGGAGCGAGGGGATGGCGCGCCTTGCGCGACGTAGAATCCGC
TACGAGTGGTATGATGAGTGCATGCAGGTTGTACTGCTTGCTGTGTTGTG
CGCGCTAGCTGGAGAGGAGGACATGTTCCTCGTGATGGCCATGTTTGGCG
TAGAAAAGCTGGAGACATGTTTCCTCTCGACTCCCGAAAACTACACTCCG
CGAACTACACTCCCCAAATCCCAACTGCCGCCAGCGGCTTCGCGCCCCTA
GTACGTGCTCCCAGAGCTACCGTCTCTTCCACCAACAACTGCTGTAACCT
CTCCCTTCACAGGCGGGGCACCCGACTAGCTGCTGTTGTGGTTATCTCCC
GTGCGCTTCCAGTCCAGAGTCCAGACAGACCAACCTCGGCGTGTTTTGTT
CTCGATCCCGCGATGAACGCACACGATCCTAACCGCGGCTTGACGTTCCC
CTAACGCGATGTACTCCCGGGAGCGTTGTGTTCACGTGTGTGGGTGTGCG
GGAAGCTGCGTGCGAGCTTGCCGACTGAGTTGATGCCTGCGTGTGTGTGC
GATGATGGCGCTTGTGTCAATTTGTCGTTTTCTCGTGTCAAAATACCTCA
GGTGAAAATATTTTGACCACGTTTTCGAAAAATTTTGACCTGTAATTCTG
ACATGAAAAAATGCGGCGTAACCTCTCGTGTCCAAATTCTGACGGTTCGT
GTCAAAATTCTGGTCTCGTGTCAAAATTTCGTGCTCGTGTCAAAATTCCT
GATACACGTGGGACCCATGTATAAATACACGCACAGAAAGACTACCCATT
CGAGATATATATACCCACAGTCGAACGGNACAGCTGTAGTTCTCTACTGG
GTCAACGACAAAATATCGGGGAGAATCCCTCCGTAGTGTCGTGTACTGTA
AGATGTAACCTTCACAGGGGACACGGCGCAGTGTCTATTGACAGCTTGCT
GGTTTTAGGAATTTAAGGAGAAATATATAATATTGATGTAAAATCATGGA
AGATGGAAAGAAGGCTATACAGCAGTACATCACTCTTTTTTCAAACCAAT
AGATTTTTGAATTTCACGGGCAGTAGGTGTTTCATGCCGTTTTTTTAGAA
TTTACAAAAA

protein sequence of EsuBft951_2a-0001

>EsuBft951_2 ID=EsuBft951_2|Name=EsuBft951_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=76bp
MARLARRRIRYEWYDECMQVVLLAVLCALAGEEDMFLVMAMFGVEKLETC
FLSTPENYTPRTTLPKSQLPPAASRP

mRNA from alignment at Scaffold_97:97800..99159+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft951_2a-0001 ID=EsuBft951_2a-0001|Name=EsuBft951_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1360bp|location=Sequence derived from alignment at Scaffold_97:97800..99159+ (Ectocarpus subulatus male Bft15b)
TGGGTTCCTACGTTAAATTGACACGAAAGTTTTTGACTGAGATAGATTGA
CACCAAAAAAAGTGACGGTTGGCAAATTGACACGAAAAAAGGTAACGGTT
GGTAAACTGACACGAAAAAATATTCCGCCGCACGTTGCCTGGCGAAGGCC
AGCAGCCAGCAGCGGTGCAGCCTCAAGTAAAAAAAAAATCAACCCCAGCT
GCACCGCTGCACCGCCGGGAAACCCAACGGTCGCGCTCCCTCATCACCGC
ACCCGACACGGAGCGAGGGGATGGCGCGCCTTGCGCGACGTAGAATCCGC
TACGAGTGGTATGATGAGTGCATGCAGGTTGTACTGCTTGCTGTGTTGTG
CGCGCTAGCTGGAGAGGAGGACATGTTCCTCGTGATGGCCATGTTTGGCG
TAGAAAAGCTGGAGACATGTTTCCTCTCGACTCCCGAAAACTACACTCCG
CGAACTACACTCCCCAAATCCCAACTGCCGCCAGCGGCTTCGCGCCCCTA
GTACGTGCTCCCAGAGCTACCGTCTCTTCCACCAACAACTGCTGTAACCT
CTCCCTTCACAGGCGGGGCACCCGACTAGCTGCTGTTGTGGTTATCTCCC
GTGCGCTTCCAGTCCAGAGTCCAGACAGACCAACCTCGGCGTGTTTTGTT
CTCGATCCCGCGATGAACGCACACGATCCTAACCGCGGCTTGACGTTCCC
CTAACGCGATGTACTCCCGGGAGCGTTGTGTTCACGTGTGTGGGTGTGCG
GGAAGCTGCGTGCGAGCTTGCCGACTGAGTTGATGCCTGCGTGTGTGTGC
GATGATGGCGCTTGTGTCAATTTGTCGTTTTCTCGTGTCAAAATACCTCA
GGTGAAAATATTTTGACCACGTTTTCGAAAAATTTTGACCTGTAATTCTG
ACATGAAAAAATGCGGCGTAACCTCTCGTGTCCAAATTCTGACGGTTCGT
GTCAAAATTCTGGTCTCGTGTCAAAATTTCGTGCTCGTGTCAAAATTCCT
GATACACGTGGGACCCATGTATAAATACACGCACAGAAAGACTACCCATT
CGAGATATATATACCCACAGTCGAACGGNACAGCTGTAGTTCTCTACTGG
GTCAACGACAAAATATCGGGGAGAATCCCTCCGTAGTGTCGTGTACTGTA
AGATGTAACCTTCACAGGGGACACGGCGCAGTGTCTATTGACAGCTTGCT
GGTTTTAGGAATTTAAGGAGAAATATATAATATTGATGTAAAATCATGGA
AGATGGAAAGAAGGCTATACAGCAGTACATCACTCTTTTTTCAAACCAAT
AGATTTTTGAATTTCACGGGCAGTAGGTGTTTCATGCCGTTTTTTTAGAA
TTTACAAAAA

Coding sequence (CDS) from alignment at Scaffold_97:97800..99159+

>EsuBft951_2a-0001 ID=EsuBft951_2a-0001|Name=EsuBft951_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=231bp|location=Sequence derived from alignment at Scaffold_97:97800..99159+ (Ectocarpus subulatus male Bft15b)
ATGGCGCGCCTTGCGCGACGTAGAATCCGCTACGAGTGGTATGATGAGTG
CATGCAGGTTGTACTGCTTGCTGTGTTGTGCGCGCTAGCTGGAGAGGAGG
ACATGTTCCTCGTGATGGCCATGTTTGGCGTAGAAAAGCTGGAGACATGT
TTCCTCTCGACTCCCGAAAACTACACTCCGCGAACTACACTCCCCAAATC
CCAACTGCCGCCAGCGGCTTCGCGCCCCTAG